Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000428

Physical Location & Seq

Genomic Coordinates Forward (+)

14823953 .. 14824547

Gene Structure 595 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG169800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGCCCGGAACATGTCGAGATAATGTGAAGGCCACTATTGATATTCCAAATCTCCAAGTTTTTGACTACGATGGTGGTTATTTGCTGCCTAATGATGTAATCTCTGTGAAAGCTCGAAATCCATTGATTGCATTTATCAAGTTTAATTGGGATGATGAAGAAGTTCTAGATCCCACTTTCCTCCCTCCATGGACACATTTTCCTACTTGGAGATATTTTCTTCAAAACTTTGATTGCTGCAATAAAGTGGTGCTAGATATCCGTCATGATGCCGTTGCTGAGGCTCTCACATTTCCAGAAAATTTCAGGCAGACATTCTCACCACCGTTATCGAATCTCAAGTATCTCAGTGTCTCGATTGTACGTCTTCGATGTCCGCAAACAATGGCCAGAGTTTCAGCCTTGACGGACTCTTTGCGTTGGATGGCACCACATGCATGGTTTACATCAACTTACTGGGACTATGATGAGCCTGAAACTTCAGAGGAAGATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TAF TAF6_C

Protein Analysis

165

Amino Acids

19.24

Weight (kDa)

4.64

Isoelectric Point (pI)

50.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000428)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica	MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica	Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis	pycom17g10120
rosa_chinensis	RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora	Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii	Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa	Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha	Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana	Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	427
AciI	CCGC	1 cut(s)	377
AclWI	GGATC	1 cut(s)	164
AcoI	YGGCCR	1 cut(s)	387
AcsI	RAATTY	1 cut(s)	301
AcuI	CTGAAG	1 cut(s)	465
AfaI	GTAC	1 cut(s)	363
AflIII	ACRYGT	1 cut(s)	11
AgsI	TTSAA	1 cut(s)	224
AluBI	AGCT	1 cut(s)	113
AluI	AGCT	1 cut(s)	113
Alw26I	GTCTC	1 cut(s)	358
AlwI	GGATC	1 cut(s)	164
AoxI	GGCC	2 cut(s)	30, 387
ApeKI	GCWGC	2 cut(s)	85, 237
ApoI	RAATTY	1 cut(s)	301
ArsI	GACNNNNNNTTYG	2 cut(s)	397, 429
Asp700I	GAANNNNTTC	1 cut(s)	162
AsuC2I	CCSGG	1 cut(s)	6
AsuHPI	GGTGA	1 cut(s)	312
BalI	TGGCCA	1 cut(s)	389
BanI	GGYRCC	1 cut(s)	427
BbsI	GAAGAC	1 cut(s)	359
BbvCI	CCTCAGC	1 cut(s)	279
BbvI	GCAGC	2 cut(s)	72, 224
BccI	CCATC	2 cut(s)	65, 418
BceAI	ACGGC	1 cut(s)	257
BcnI	CCSGG	1 cut(s)	6
BcoDI	GTCTC	1 cut(s)	358
BfaI	CTAG	2 cut(s)	167, 254
BisI	GCNGC	2 cut(s)	86, 238
BlsI	GCNGC	2 cut(s)	87, 239
Bme1390I	CCNGG	1 cut(s)	6
BmiI	GGNNCC	1 cut(s)	429
BmrFI	CCNGG	1 cut(s)	6
BmrI	ACTGGG	1 cut(s)	466
BmsI	GCATC	1 cut(s)	259
BmuI	ACTGGG	1 cut(s)	466
BpiI	GAAGAC	1 cut(s)	359
Bpu10I	CCTNAGC	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	323
BpuMI	CCSGG	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	188
Bse1I	ACTGG	1 cut(s)	461
BseDI	CCNNGG	1 cut(s)	188
BseGI	GGATG	2 cut(s)	157, 429
BseMII	CTCAG	2 cut(s)	270, 361
BseNI	ACTGG	1 cut(s)	461
BseXI	GCAGC	2 cut(s)	72, 224
BshFI	GGCC	2 cut(s)	32, 389
BshNI	GGYRCC	1 cut(s)	427
BsiSI	CCGG	1 cut(s)	6
BslFI	GGGAC	1 cut(s)	473
BsmAI	GTCTC	1 cut(s)	358
BsmFI	GGGAC	1 cut(s)	473
BsnI	GGCC	2 cut(s)	32, 389
Bsp143I	GATC	1 cut(s)	169
Bsp19I	CCATGG	1 cut(s)	188
BspACI	CCGC	1 cut(s)	377
BspANI	GGCC	2 cut(s)	32, 389
BspCNI	CTCAG	2 cut(s)	271, 360
BspHI	TCATGA	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	429
BspPI	GGATC	1 cut(s)	164
BspT107I	GGYRCC	1 cut(s)	427
BsrI	ACTGG	1 cut(s)	461
BssECI	CCNNGG	1 cut(s)	188
BssMI	GATC	1 cut(s)	169
BssT1I	CCWWGG	1 cut(s)	188
Bst4CI	ACNGT	1 cut(s)	327
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstDEI	CTNAG	2 cut(s)	279, 347
BstDSI	CCRYGG	1 cut(s)	188
BstF5I	GGATG	2 cut(s)	157, 429
BstKTI	GATC	1 cut(s)	172
BstMAI	GTCTC	1 cut(s)	358
BstMBI	GATC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	1 cut(s)	434
BstNSI	RCATGY	2 cut(s)	15, 437
BstSCI	CCNGG	1 cut(s)	4
BstV1I	GCAGC	2 cut(s)	72, 224
BstV2I	GAAGAC	1 cut(s)	359
BstX2I	RGATCY	1 cut(s)	169
BstXI	CCANNNNNNTGG	1 cut(s)	438
BstYI	RGATCY	1 cut(s)	169
BsuRI	GGCC	2 cut(s)	32, 389
BtgI	CCRYGG	1 cut(s)	188
BtsCI	GGATG	2 cut(s)	157, 429
BtsIMutI	CAGTG	1 cut(s)	355
CciI	TCATGA	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	362
CviAII	CATG	5 cut(s)	12, 189, 266, 434, 438
CviJI	RGCY	6 cut(s)	32, 113, 284, 389, 401, 472
CviKI_1	RGCY	6 cut(s)	32, 113, 284, 389, 401, 472
CviQI	GTAC	1 cut(s)	362
DdeI	CTNAG	2 cut(s)	279, 347
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
EaeI	YGGCCR	1 cut(s)	387
Eco130I	CCWWGG	1 cut(s)	188
Eco32I	GATATC	1 cut(s)	259
Eco57I	CTGAAG	1 cut(s)	465
EcoRV	GATATC	1 cut(s)	259
EcoT14I	CCWWGG	1 cut(s)	188
EcoT22I	ATGCAT	1 cut(s)	439
ErhI	CCWWGG	1 cut(s)	188
FaeI	CATG	5 cut(s)	15, 192, 269, 437, 441
FaiI	YATR	6 cut(s)	13, 190, 267, 435, 439, 465
FaqI	GGGAC	1 cut(s)	473
FatI	CATG	5 cut(s)	11, 188, 265, 433, 437
Fnu4HI	GCNGC	2 cut(s)	86, 238
FokI	GGATG	2 cut(s)	164, 436
Fsp4HI	GCNGC	2 cut(s)	86, 238
FspBI	CTAG	2 cut(s)	167, 254
GluI	GCNGC	2 cut(s)	86, 238
HaeIII	GGCC	2 cut(s)	32, 389
HapII	CCGG	1 cut(s)	6
Hin1II	CATG	5 cut(s)	15, 192, 269, 437, 441
HinfI	GANTC	2 cut(s)	334, 410
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	1 cut(s)	312
Hpy166II	GTNNAC	1 cut(s)	444
Hpy188I	TCNGA	1 cut(s)	484
Hpy188III	TCNNGA	5 cut(s)	17, 167, 266, 296, 355
Hpy8I	GTNNAC	1 cut(s)	444
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	1 cut(s)	327
HpyCH4IV	ACGT	1 cut(s)	364
HpyCH4V	TGCA	3 cut(s)	131, 240, 437
HpyF10VI	GCNNNNNNNGC	1 cut(s)	434
HpyF3I	CTNAG	2 cut(s)	279, 347
HpySE526I	ACGT	1 cut(s)	364
Hsp92II	CATG	5 cut(s)	15, 192, 269, 437, 441
Kzo9I	GATC	1 cut(s)	169
LpnPI	CCDG	6 cut(s)	19, 292, 309, 403, 442, 486
Lsp1109I	GCAGC	2 cut(s)	72, 224
LweI	GCATC	1 cut(s)	259
MaeI	CTAG	2 cut(s)	167, 254
MaeII	ACGT	1 cut(s)	364
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	3 cut(s)	170, 212, 359
MflI	RGATCY	1 cut(s)	169
MlsI	TGGCCA	1 cut(s)	389
MluCI	AATT	2 cut(s)	145, 301
MluNI	TGGCCA	1 cut(s)	389
MlyI	GAGTC	1 cut(s)	404
MmeI	TCCRAC	1 cut(s)	401
MnlI	CCTC	4 cut(s)	191, 195, 274, 478
Mox20I	TGGCCA	1 cut(s)	389
Mph1103I	ATGCAT	1 cut(s)	439
MroXI	GAANNNNTTC	1 cut(s)	162
MscI	TGGCCA	1 cut(s)	389
MseI	TTAA	1 cut(s)	144
MslI	CAYNNNNRTG	1 cut(s)	436
Msp20I	TGGCCA	1 cut(s)	389
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	6
MwoI	GCNNNNNNNGC	1 cut(s)	434
NciI	CCSGG	1 cut(s)	6
NcoI	CCATGG	1 cut(s)	188
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	5 cut(s)	15, 192, 269, 437, 441
NlaIV	GGNNCC	1 cut(s)	429
NsiI	ATGCAT	1 cut(s)	439
NspI	RCATGY	2 cut(s)	15, 437
PagI	TCATGA	1 cut(s)	265
PciI	ACATGT	1 cut(s)	11
PdmI	GAANNNNTTC	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	334
PkrI	GCNGC	2 cut(s)	87, 239
PleI	GAGTC	1 cut(s)	404
PpsI	GAGTC	1 cut(s)	404
PscI	ACATGT	1 cut(s)	11
PspN4I	GGNNCC	1 cut(s)	429
PsuI	RGATCY	1 cut(s)	169
RsaI	GTAC	1 cut(s)	363
RsaNI	GTAC	1 cut(s)	362
RseI	CAYNNNNRTG	1 cut(s)	436
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	2 cut(s)	86, 238
Sau3AI	GATC	1 cut(s)	169
SchI	GAGTC	1 cut(s)	404
ScrFI	CCNGG	1 cut(s)	6
SetI	ASST	2 cut(s)	115, 367
SfaNI	GCATC	1 cut(s)	259
SmiMI	CAYNNNNRTG	1 cut(s)	436
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	2 cut(s)	145, 301
SsiI	CCGC	1 cut(s)	377
SspMI	CTAG	2 cut(s)	167, 254
StyD4I	CCNGG	1 cut(s)	4
StyI	CCWWGG	1 cut(s)	188
TaaI	ACNGT	1 cut(s)	327
TaiI	ACGT	1 cut(s)	367
TaqI	TCGA	5 cut(s)	16, 115, 332, 356, 370
TasI	AATT	2 cut(s)	145, 301
TfiI	GAWTC	1 cut(s)	334
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TscAI	CASTG	1 cut(s)	355
TseI	GCWGC	2 cut(s)	85, 237
TspDTI	ATGAA	1 cut(s)	171
TspGWI	ACGGA	2 cut(s)	251, 422
TspRI	CASTG	1 cut(s)	355
XapI	RAATTY	1 cut(s)	301
XbaI	TCTAGA	1 cut(s)	166
XceI	RCATGY	2 cut(s)	15, 437
XmnI	GAANNNNTTC	1 cut(s)	162
XspI	CTAG	2 cut(s)	167, 254
Zsp2I	ATGCAT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.