Rh5AG024900

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000428
Physical Location & Seq
Forward (+)
1732152 .. 1733153
1002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG024900.1

Sequence Viewer

Length: 1002 bp
ATGAGGAGATACTTATTTAGAGATTCTGCTATCGTAGATAAGTGGTTGAGTTTTGCATTTGAGAGAAGCGTCAAGGAGGTAGATCTTAGCCTTGATATTGCTTGGCATAAACGGTTGGAATTTTTCTATTGCATATCGCCAATGAGTTTTCCTAGTGCAAAATCCATAACTACTTTGAATTTGGAGTTTGTGAGAATACAACACGTGTACTGTCCTGAGCTTACAGATACAAGTCTTCCTTCTTTGAGAAACATGTCTCTGAAAAGTGTCCACTTCAACTGCCGGGCTCCTCTGGGGTTAATTCGGGAGTGCCCTTCCATCGAATATCTGTCATTAACTTCATGTTACTTTGAAGACTTGGCATTTTATTTTTCAAGTTCTAGTCTCAAATCTTTGAAAGCTACGGATTGCGATGCTCATCTTATTAAGGTGGACGAAGCTGTGAATCTTGAACACTATACATTTTCGTCAAAATTCCAGCTCAAGAGTATGATTTTGAATAAATGCTTCAACTTGAAATATATCAACATCCATGCTCAGCACCTCGAAAAACTTACTTTACATGGATGCCATGAGAGTCTGAAGGCCACTATCCATACTCCGCGTCTTCTTGATTTGAAGTTGCATGGTTTTCTAAAATCCAAAGTGTCTTTGAAATGTCCATATTTAAGGACAACCGTCATCCTACTTTGGGACAGTTTTGATGGAGAATCACATTTTCTAACATTGAGAGATTTCTTTAAAGCATTTGATGGCTCCGACAACATAACTCTCTATGTTCATGATTTTAAGGTTCTAATTTGTCCCCAAAGTTTCAGAGAGACCTTCTCGTCACCATTGTGTAAGATCAGAGAGCTCATGATGATCCTATTGTCAAATCCTCCAACAAAGGCAGAAGCTATTTCCGACTTGAATGATTCCTCGACTTGGATGGCACCATCTGCAAGTAGAAACTGGATGGCACCTTCTGCAGCTATATGGCCTCCAGCTTCACTATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

333

Amino Acids

38.31

Weight (kDa)

8.23

Isoelectric Point (pI)

49.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 10 - 153 8.8e-06 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 12 - 185 5.3e-12 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 829
AccB1I GGYRCC 2 cut(s) 934, 961
AccII CGCG 1 cut(s) 604
AciI CCGC 1 cut(s) 602
AclWI GGATC 1 cut(s) 859
AcsI RAATTY 3 cut(s) 119, 178, 473
AcuI CTGAAG 1 cut(s) 602
AcvI CACGTG 1 cut(s) 205
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 2 cut(s) 691, 927
AflIII ACRYGT 3 cut(s) 202, 204, 252
AleI CACNNNNGTG 2 cut(s) 838, 997
AluBI AGCT 8 cut(s) 220, 401, 440, 481, 856, 899, 974, 989
AluI AGCT 8 cut(s) 220, 401, 440, 481, 856, 899, 974, 989
Alw21I GWGCWC 1 cut(s) 858
Alw26I GTCTC 3 cut(s) 261, 389, 815
AlwI GGATC 1 cut(s) 859
AoxI GGCC 2 cut(s) 585, 980
ApeKI GCWGC 1 cut(s) 971
ApoI RAATTY 3 cut(s) 119, 178, 473
AsuC2I CCSGG 1 cut(s) 284
AsuHPI GGTGA 1 cut(s) 825
BaeGI GKGCMC 1 cut(s) 314
BanI GGYRCC 2 cut(s) 934, 961
BanII GRGCYC 2 cut(s) 289, 858
BbrPI CACGTG 1 cut(s) 205
BbsI GAAGAC 3 cut(s) 227, 360, 599
Bbv12I GWGCWC 1 cut(s) 858
BbvI GCAGC 1 cut(s) 983
BccI CCATC 6 cut(s) 326, 698, 746, 925, 946, 952
BcnI CCSGG 1 cut(s) 284
BcoDI GTCTC 3 cut(s) 261, 389, 815
BfaI CTAG 2 cut(s) 153, 381
BfmI CTRYAG 1 cut(s) 969
BglII AGATCT 1 cut(s) 82
BisI GCNGC 1 cut(s) 972
BlpI GCTNAGC 1 cut(s) 537
BlsI GCNGC 1 cut(s) 973
Bme1390I CCNGG 1 cut(s) 284
BmiI GGNNCC 4 cut(s) 288, 757, 936, 963
BmrFI CCNGG 1 cut(s) 284
BmsI GCATC 2 cut(s) 403, 557
BoxI GACNNNNGTC 1 cut(s) 677
BpiI GAAGAC 3 cut(s) 227, 360, 599
BplI GAGNNNNNCTC 2 cut(s) 812, 844
BpmI CTGGAG 1 cut(s) 969
Bpu10I CCTNAGC 1 cut(s) 216
Bpu1102I GCTNAGC 1 cut(s) 537
BpuEI CTTGAG 1 cut(s) 467
BpuMI CCSGG 1 cut(s) 284
BsaAI YACGTR 1 cut(s) 205
BsaBI GATNNNNATC 1 cut(s) 417
BsaI GGTCTC 1 cut(s) 815
Bsc4I CCNNNNNNNGG 2 cut(s) 691, 927
Bse1I ACTGG 1 cut(s) 959
Bse8I GATNNNNATC 1 cut(s) 417
BseGI GGATG 5 cut(s) 528, 572, 681, 936, 963
BseJI GATNNNNATC 1 cut(s) 417
BseLI CCNNNNNNNGG 2 cut(s) 691, 927
BseMII CTCAG 2 cut(s) 207, 551
BseNI ACTGG 1 cut(s) 959
BseRI GAGGAG 2 cut(s) 19, 279
BseSI GKGCMC 1 cut(s) 314
BseXI GCAGC 1 cut(s) 983
Bsh1236I CGCG 1 cut(s) 604
BshFI GGCC 2 cut(s) 587, 982
BshNI GGYRCC 2 cut(s) 934, 961
BsiHKAI GWGCWC 1 cut(s) 858
BsiSI CCGG 1 cut(s) 283
BslFI GGGAC 2 cut(s) 707, 789
BslI CCNNNNNNNGG 2 cut(s) 691, 927
BsmAI GTCTC 3 cut(s) 261, 389, 815
BsmFI GGGAC 2 cut(s) 707, 789
BsnI GGCC 2 cut(s) 587, 982
Bso31I GGTCTC 1 cut(s) 815
Bsp1286I GDGCHC 3 cut(s) 289, 314, 858
Bsp143I GATC 3 cut(s) 82, 846, 864
Bsp1720I GCTNAGC 1 cut(s) 537
BspACI CCGC 1 cut(s) 602
BspANI GGCC 2 cut(s) 587, 982
BspCNI CTCAG 2 cut(s) 208, 550
BspFNI CGCG 1 cut(s) 604
BspHI TCATGA 2 cut(s) 781, 858
BspLI GGNNCC 4 cut(s) 288, 757, 936, 963
BspMAI CTGCAG 1 cut(s) 973
BspPI GGATC 1 cut(s) 859
BspT107I GGYRCC 2 cut(s) 934, 961
BspTNI GGTCTC 1 cut(s) 815
BsrI ACTGG 1 cut(s) 959
BssMI GATC 3 cut(s) 82, 846, 864
Bst4CI ACNGT 4 cut(s) 114, 212, 679, 698
BstAPI GCANNNNNTGC 2 cut(s) 941, 968
BstBAI YACGTR 1 cut(s) 205
BstDEI CTNAG 3 cut(s) 86, 216, 537
BstF5I GGATG 5 cut(s) 528, 572, 681, 936, 963
BstFNI CGCG 1 cut(s) 604
BstKTI GATC 3 cut(s) 85, 849, 867
BstMAI GTCTC 3 cut(s) 261, 389, 815
BstMBI GATC 3 cut(s) 82, 846, 864
BstMWI GCNNNNNNNGC 2 cut(s) 941, 968
BstNSI RCATGY 1 cut(s) 256
BstPAI GACNNNNGTC 1 cut(s) 677
BstSCI CCNGG 1 cut(s) 282
BstSFI CTRYAG 1 cut(s) 969
BstSLI GKGCMC 1 cut(s) 314
BstUI CGCG 1 cut(s) 604
BstV1I GCAGC 1 cut(s) 983
BstV2I GAAGAC 3 cut(s) 227, 360, 599
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
BsuRI GGCC 2 cut(s) 587, 982
BtgZI GCGATG 1 cut(s) 426
BtsCI GGATG 5 cut(s) 528, 572, 681, 936, 963
CciI TCATGA 2 cut(s) 781, 858
CseI GACGC 2 cut(s) 58, 593
Csp6I GTAC 1 cut(s) 208
CviAII CATG 8 cut(s) 253, 342, 533, 563, 572, 626, 782, 859
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 3 cut(s) 86, 216, 537
DpnI GATC 3 cut(s) 84, 848, 866
DpnII GATC 3 cut(s) 82, 846, 864
DraI TTTAAA 1 cut(s) 742
DrdI GACNNNNNNGTC 1 cut(s) 829
DseDI GACNNNNNNGTC 1 cut(s) 829
Ecl136II GAGCTC 1 cut(s) 856
Eco24I GRGCYC 2 cut(s) 289, 858
Eco31I GGTCTC 1 cut(s) 815
Eco53kI GAGCTC 1 cut(s) 856
Eco57I CTGAAG 1 cut(s) 602
Eco72I CACGTG 1 cut(s) 205
EcoICRI GAGCTC 1 cut(s) 856
EcoT38I GRGCYC 2 cut(s) 289, 858
FaeI CATG 8 cut(s) 256, 345, 536, 566, 575, 629, 785, 862
FalI AAGNNNNNCTT 2 cut(s) 223, 255
FaqI GGGAC 2 cut(s) 707, 789
FatI CATG 8 cut(s) 252, 341, 532, 562, 571, 625, 781, 858
Fnu4HI GCNGC 1 cut(s) 972
FokI GGATG 5 cut(s) 515, 579, 668, 943, 970
FriOI GRGCYC 2 cut(s) 289, 858
Fsp4HI GCNGC 1 cut(s) 972
FspBI CTAG 2 cut(s) 153, 381
GluI GCNGC 1 cut(s) 972
GsuI CTGGAG 1 cut(s) 969
HaeIII GGCC 2 cut(s) 587, 982
HapII CCGG 1 cut(s) 283
HgaI GACGC 2 cut(s) 58, 593
Hin1II CATG 8 cut(s) 256, 345, 536, 566, 575, 629, 785, 862
HinfI GANTC 5 cut(s) 23, 445, 577, 710, 917
HpaII CCGG 1 cut(s) 283
HphI GGTGA 1 cut(s) 825
Hpy166II GTNNAC 3 cut(s) 208, 271, 433
Hpy188I TCNGA 6 cut(s) 261, 582, 760, 818, 851, 907
Hpy188III TCNNGA 7 cut(s) 215, 305, 449, 484, 611, 782, 859
Hpy8I GTNNAC 3 cut(s) 208, 271, 433
HpyAV CCTTC 5 cut(s) 249, 324, 577, 835, 975
HpyCH4III ACNGT 4 cut(s) 114, 212, 679, 698
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 6 cut(s) 56, 132, 158, 625, 944, 971
HpyF10VI GCNNNNNNNGC 2 cut(s) 941, 968
HpyF3I CTNAG 3 cut(s) 86, 216, 537
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 8 cut(s) 256, 345, 536, 566, 575, 629, 785, 862
Kzo9I GATC 3 cut(s) 82, 846, 864
LmnI GCTCC 2 cut(s) 292, 761
LpnPI CCDG 5 cut(s) 228, 278, 296, 491, 940
Lsp1109I GCAGC 1 cut(s) 983
LweI GCATC 2 cut(s) 403, 557
MaeI CTAG 2 cut(s) 153, 381
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 2 cut(s) 344, 831
MalI GATC 3 cut(s) 84, 848, 866
MboI GATC 3 cut(s) 82, 846, 864
MboII GAAGA 3 cut(s) 227, 365, 599
MflI RGATCY 1 cut(s) 82
MhlI GDGCHC 3 cut(s) 289, 314, 858
MluCI AATT 5 cut(s) 119, 178, 300, 473, 798
MlyI GAGTC 1 cut(s) 586
MmeI TCCRAC 4 cut(s) 96, 783, 908, 930
MnlI CCTC 6 cut(s) 70, 300, 554, 891, 931, 993
MseI TTAA 6 cut(s) 299, 335, 426, 668, 741, 789
MslI CAYNNNNRTG 2 cut(s) 838, 997
MspI CCGG 1 cut(s) 283
MspR9I CCNGG 1 cut(s) 284
MvnI CGCG 1 cut(s) 604
MwoI GCNNNNNNNGC 2 cut(s) 941, 968
NciI CCSGG 1 cut(s) 284
NdeII GATC 3 cut(s) 82, 846, 864
NlaIII CATG 8 cut(s) 256, 345, 536, 566, 575, 629, 785, 862
NlaIV GGNNCC 4 cut(s) 288, 757, 936, 963
NmuCI GTSAC 1 cut(s) 831
NspI RCATGY 1 cut(s) 256
OliI CACNNNNGTG 2 cut(s) 838, 997
PagI TCATGA 2 cut(s) 781, 858
PciI ACATGT 1 cut(s) 252
PfeI GAWTC 4 cut(s) 23, 445, 710, 917
PkrI GCNGC 1 cut(s) 973
PleI GAGTC 1 cut(s) 585
PmaCI CACGTG 1 cut(s) 205
PmlI CACGTG 1 cut(s) 205
PpsI GAGTC 1 cut(s) 585
Ppu21I YACGTR 1 cut(s) 205
PscI ACATGT 1 cut(s) 252
PshAI GACNNNNGTC 1 cut(s) 677
Psp124BI GAGCTC 1 cut(s) 858
PspCI CACGTG 1 cut(s) 205
PspN4I GGNNCC 4 cut(s) 288, 757, 936, 963
PstI CTGCAG 1 cut(s) 973
PsuI RGATCY 1 cut(s) 82
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
RseI CAYNNNNRTG 2 cut(s) 838, 997
SacI GAGCTC 1 cut(s) 858
SaqAI TTAA 6 cut(s) 299, 335, 426, 668, 741, 789
SatI GCNGC 1 cut(s) 972
Sau3AI GATC 3 cut(s) 82, 846, 864
SchI GAGTC 1 cut(s) 586
ScrFI CCNGG 1 cut(s) 284
SduI GDGCHC 3 cut(s) 289, 314, 858
SfaNI GCATC 2 cut(s) 403, 557
SfcI CTRYAG 1 cut(s) 969
SmiMI CAYNNNNRTG 2 cut(s) 838, 997
SmlI CTYRAG 1 cut(s) 482
SmoI CTYRAG 1 cut(s) 482
Sse9I AATT 5 cut(s) 119, 178, 300, 473, 798
SsiI CCGC 1 cut(s) 602
SspMI CTAG 2 cut(s) 153, 381
SstI GAGCTC 1 cut(s) 858
StyD4I CCNGG 1 cut(s) 282
TaaI ACNGT 4 cut(s) 114, 212, 679, 698
TaiI ACGT 1 cut(s) 207
TaqI TCGA 3 cut(s) 321, 546, 923
TasI AATT 5 cut(s) 119, 178, 300, 473, 798
TatI WGTACW 1 cut(s) 207
TfiI GAWTC 4 cut(s) 23, 445, 710, 917
Tru1I TTAA 6 cut(s) 299, 335, 426, 668, 741, 789
Tru9I TTAA 6 cut(s) 299, 335, 426, 668, 741, 789
TseFI GTSAC 1 cut(s) 831
TseI GCWGC 1 cut(s) 971
Tsp45I GTSAC 1 cut(s) 831
TspDTI ATGAA 2 cut(s) 330, 770
TspGWI ACGGA 1 cut(s) 419
XapI RAATTY 3 cut(s) 119, 178, 473
XceI RCATGY 1 cut(s) 256
XspI CTAG 2 cut(s) 153, 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.