Rmu_sc0008035.1_g000004

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008035.1
OG0000428
Physical Location & Seq
Forward (+)
8502 .. 9317
816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008035.1_g000004.1.cds

Sequence Viewer

Length: 816 bp
atgaagaacattgacagttgtgtcgagcctattgactactctatctctctgcgccttcttccttctttgaaaaccatgtctcttaaaactgttcaatttgatcacaatgctctcttcttcttagtttgggagtgccctttcatcgagcatctttccttggcttcatgttcttttgaactctccgagattcgtcttttaagtcccacactcaaatccttggaaattaagcactgcaaggcttctcaagctgtactttatgtcgaagatcttgaatctctttccatcgtttcatcagactttccgttggaaggcgtgatcttggaaagatgcttcaaattgaaacatgttaatatatgtgctcagttcttggaatggttttatttacaaggacaatgccatgatattaatgccgtaatcgacgctccagccctattttttttcagtttcagaggtcatttagggtccaaattttctttgaaagctccaaatttacgtaaatcccgtatcatactattgaacgaagaattatcctccttcaccgggcaatggaagcattttcctaaactgaaagattttctccaagaatttggtagttgcaaagagatggtcctctatgttgacgattttgaggttctcatattttcagaagatttcagaaagaccttggcttcaccaatattggcagatctcgaatttcttgaacttacaattgagaaccctcctacatatgagagagataagcaaaacttgaaggactccttgcattggatggcacctgctctgaagcttattgagtcggatgtgtatttaaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

271

Amino Acids

31.3

Weight (kDa)

5.31

Isoelectric Point (pI)

50.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 784
AasI GACNNNNNNGTC 1 cut(s) 20
Acc36I ACCTGC 1 cut(s) 784
AccB1I GGYRCC 1 cut(s) 772
AcsI RAATTY 4 cut(s) 467, 487, 584, 692
AcuI CTGAAG 1 cut(s) 803
AfaI GTAC 1 cut(s) 252
AfiI CCNNNNNNNGG 4 cut(s) 308, 540, 546, 765
AflIII ACRYGT 1 cut(s) 343
AluBI AGCT 3 cut(s) 248, 482, 787
AluI AGCT 3 cut(s) 248, 482, 787
Alw21I GWGCWC 1 cut(s) 361
Alw26I GTCTC 1 cut(s) 84
ApoI RAATTY 4 cut(s) 467, 487, 584, 692
ArsI GACNNNNNNTTYG 2 cut(s) 591, 623
AseI ATTAAT 1 cut(s) 405
AspLEI GCGC 1 cut(s) 54
AspS9I GGNCC 2 cut(s) 462, 607
AsuC2I CCSGG 1 cut(s) 541
AsuHPI GGTGA 2 cut(s) 529, 663
AvaII GGWCC 2 cut(s) 462, 607
BaeGI GKGCMC 1 cut(s) 137
BanI GGYRCC 1 cut(s) 772
Bbv12I GWGCWC 1 cut(s) 361
BccI CCATC 3 cut(s) 290, 598, 763
BceAI ACGGC 1 cut(s) 395
BclI TGATCA 1 cut(s) 100
BcnI CCSGG 1 cut(s) 541
BcoDI GTCTC 1 cut(s) 84
BfaI CTAG 1 cut(s) 814
BfuAI ACCTGC 1 cut(s) 784
BglII AGATCT 2 cut(s) 265, 685
Bme1390I CCNGG 1 cut(s) 541
Bme18I GGWCC 2 cut(s) 462, 607
BmgT120I GGNCC 2 cut(s) 462, 607
BmiI GGNNCC 2 cut(s) 463, 774
BmrFI CCNGG 1 cut(s) 541
BmsI GCATC 2 cut(s) 157, 317
BpmI CTGGAG 1 cut(s) 408
BpuEI CTTGAG 1 cut(s) 228
BpuMI CCSGG 1 cut(s) 541
BsaAI YACGTR 1 cut(s) 494
BsaJI CCNNGG 3 cut(s) 156, 216, 663
Bsc4I CCNNNNNNNGG 4 cut(s) 308, 540, 546, 765
Bse3DI GCAATG 1 cut(s) 551
BseDI CCNNGG 3 cut(s) 156, 216, 663
BseGI GGATG 2 cut(s) 774, 805
BseLI CCNNNNNNNGG 4 cut(s) 308, 540, 546, 765
BseMI GCAATG 1 cut(s) 551
BseMII CTCAG 1 cut(s) 374
BseSI GKGCMC 1 cut(s) 137
BshNI GGYRCC 1 cut(s) 772
BsiHKAI GWGCWC 1 cut(s) 361
BsiSI CCGG 1 cut(s) 540
BslFI GGGAC 1 cut(s) 186
BslI CCNNNNNNNGG 4 cut(s) 308, 540, 546, 765
BsmAI GTCTC 1 cut(s) 84
BsmFI GGGAC 1 cut(s) 186
Bsp1286I GDGCHC 2 cut(s) 137, 361
Bsp143I GATC 4 cut(s) 100, 265, 315, 685
BspCNI CTCAG 1 cut(s) 373
BspLI GGNNCC 2 cut(s) 463, 774
BspMI ACCTGC 1 cut(s) 784
BspT107I GGYRCC 1 cut(s) 772
BsrDI GCAATG 1 cut(s) 551
BssECI CCNNGG 3 cut(s) 156, 216, 663
BssMI GATC 4 cut(s) 100, 265, 315, 685
BssT1I CCWWGG 3 cut(s) 156, 216, 663
Bst4CI ACNGT 2 cut(s) 17, 91
Bst6I CTCTTC 1 cut(s) 119
BstBAI YACGTR 1 cut(s) 494
BstDEI CTNAG 2 cut(s) 121, 360
BstF5I GGATG 2 cut(s) 774, 805
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 4 cut(s) 103, 268, 318, 688
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 4 cut(s) 100, 265, 315, 685
BstMWI GCNNNNNNNGC 2 cut(s) 245, 550
BstNSI RCATGY 1 cut(s) 347
BstSCI CCNGG 1 cut(s) 539
BstSLI GKGCMC 1 cut(s) 137
BstSNI TACGTA 1 cut(s) 494
BstX2I RGATCY 2 cut(s) 265, 685
BstXI CCANNNNNNTGG 1 cut(s) 587
BstYI RGATCY 2 cut(s) 265, 685
BtsCI GGATG 2 cut(s) 774, 805
BtsI GCAGTG 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 229
BveI ACCTGC 1 cut(s) 784
CfoI GCGC 1 cut(s) 54
Cfr13I GGNCC 2 cut(s) 462, 607
CseI GACGC 1 cut(s) 428
Csp6I GTAC 1 cut(s) 251
CviAII CATG 4 cut(s) 76, 165, 344, 398
CviJI RGCY 8 cut(s) 28, 161, 239, 248, 428, 482, 668, 787
CviKI_1 RGCY 8 cut(s) 28, 161, 239, 248, 428, 482, 668, 787
CviQI GTAC 1 cut(s) 251
DdeI CTNAG 2 cut(s) 121, 360
DpnI GATC 4 cut(s) 102, 267, 317, 687
DpnII GATC 4 cut(s) 100, 265, 315, 685
DraI TTTAAA 1 cut(s) 810
DrdI GACNNNNNNGTC 1 cut(s) 20
DseDI GACNNNNNNGTC 1 cut(s) 20
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Eco105I TACGTA 1 cut(s) 494
Eco130I CCWWGG 3 cut(s) 156, 216, 663
Eco47I GGWCC 2 cut(s) 462, 607
Eco57I CTGAAG 1 cut(s) 803
EcoT14I CCWWGG 3 cut(s) 156, 216, 663
ErhI CCWWGG 3 cut(s) 156, 216, 663
FaeI CATG 4 cut(s) 79, 168, 347, 401
FalI AAGNNNNNCTT 6 cut(s) 237, 269, 731, 763, 743, 775
FaqI GGGAC 1 cut(s) 186
FatI CATG 4 cut(s) 75, 164, 343, 397
FauNDI CATATG 1 cut(s) 727
FbaI TGATCA 1 cut(s) 100
FokI GGATG 2 cut(s) 781, 812
FspBI CTAG 1 cut(s) 814
GlaI GCGC 1 cut(s) 53
GsuI CTGGAG 1 cut(s) 408
HapII CCGG 1 cut(s) 540
HgaI GACGC 1 cut(s) 428
HhaI GCGC 1 cut(s) 54
Hin1II CATG 4 cut(s) 79, 168, 347, 401
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HincII GTYRAC 1 cut(s) 619
HindII GTYRAC 1 cut(s) 619
HindIII AAGCTT 1 cut(s) 785
HinfI GANTC 4 cut(s) 187, 272, 755, 794
HpaII CCGG 1 cut(s) 540
HphI GGTGA 2 cut(s) 529, 663
Hpy166II GTNNAC 1 cut(s) 619
Hpy188I TCNGA 7 cut(s) 184, 295, 449, 646, 656, 783, 799
Hpy188III TCNNGA 3 cut(s) 269, 689, 698
Hpy8I GTNNAC 1 cut(s) 619
Hpy99I CGWCG 1 cut(s) 422
HpyAV CCTTC 5 cut(s) 65, 72, 302, 544, 745
HpyCH4III ACNGT 2 cut(s) 17, 91
HpyCH4IV ACGT 1 cut(s) 493
HpyCH4V TGCA 3 cut(s) 234, 597, 763
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 550
HpyF3I CTNAG 2 cut(s) 121, 360
HpySE526I ACGT 1 cut(s) 493
Hsp92II CATG 4 cut(s) 79, 168, 347, 401
HspAI GCGC 1 cut(s) 52
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 4 cut(s) 100, 265, 315, 685
LmnI GCTCC 2 cut(s) 427, 487
LpnPI CCDG 3 cut(s) 438, 553, 789
LweI GCATC 2 cut(s) 157, 317
MaeI CTAG 1 cut(s) 814
MaeII ACGT 1 cut(s) 493
MalI GATC 4 cut(s) 102, 267, 317, 687
MboI GATC 4 cut(s) 100, 265, 315, 685
MboII GAAGA 7 cut(s) 16, 50, 106, 109, 275, 533, 659
MfeI CAATTG 1 cut(s) 708
MflI RGATCY 2 cut(s) 265, 685
MhlI GDGCHC 2 cut(s) 137, 361
MluCI AATT 9 cut(s) 95, 222, 335, 467, 487, 524, 584, 692, 708
MlyI GAGTC 2 cut(s) 749, 803
MmeI TCCRAC 2 cut(s) 285, 777
MnlI CCTC 5 cut(s) 443, 541, 620, 622, 729
MseI TTAA 6 cut(s) 84, 197, 225, 348, 405, 809
MspI CCGG 1 cut(s) 540
MspR9I CCNGG 1 cut(s) 541
MunI CAATTG 1 cut(s) 708
MwoI GCNNNNNNNGC 2 cut(s) 245, 550
NciI CCSGG 1 cut(s) 541
NdeI CATATG 1 cut(s) 727
NdeII GATC 4 cut(s) 100, 265, 315, 685
NlaIII CATG 4 cut(s) 79, 168, 347, 401
NlaIV GGNNCC 2 cut(s) 463, 774
NspI RCATGY 1 cut(s) 347
PaqCI CACCTGC 1 cut(s) 784
PciI ACATGT 1 cut(s) 343
PcsI WCGNNNNNNNCGW 1 cut(s) 499
PfeI GAWTC 2 cut(s) 187, 272
PleI GAGTC 2 cut(s) 749, 802
PpsI GAGTC 2 cut(s) 749, 802
Ppu21I YACGTR 1 cut(s) 494
PscI ACATGT 1 cut(s) 343
PshBI ATTAAT 1 cut(s) 405
PspN4I GGNNCC 2 cut(s) 463, 774
PspPI GGNCC 2 cut(s) 462, 607
PsuI RGATCY 2 cut(s) 265, 685
RsaI GTAC 1 cut(s) 252
RsaNI GTAC 1 cut(s) 251
SaqAI TTAA 6 cut(s) 84, 197, 225, 348, 405, 809
Sau3AI GATC 4 cut(s) 100, 265, 315, 685
Sau96I GGNCC 2 cut(s) 462, 607
SchI GAGTC 2 cut(s) 749, 803
ScrFI CCNGG 1 cut(s) 541
SduI GDGCHC 2 cut(s) 137, 361
SetI ASST 8 cut(s) 250, 454, 484, 496, 633, 665, 778, 789
SfaNI GCATC 2 cut(s) 157, 317
SinI GGWCC 2 cut(s) 462, 607
SmlI CTYRAG 1 cut(s) 243
SmoI CTYRAG 1 cut(s) 243
SnaBI TACGTA 1 cut(s) 494
Sse9I AATT 9 cut(s) 95, 222, 335, 467, 487, 524, 584, 692, 708
SspI AATATT 1 cut(s) 678
SspMI CTAG 1 cut(s) 814
StyD4I CCNGG 1 cut(s) 539
StyI CCWWGG 3 cut(s) 156, 216, 663
TaaI ACNGT 2 cut(s) 17, 91
TaiI ACGT 1 cut(s) 496
TaqI TCGA 5 cut(s) 24, 144, 261, 417, 690
TasI AATT 9 cut(s) 95, 222, 335, 467, 487, 524, 584, 692, 708
TatI WGTACW 1 cut(s) 250
TfiI GAWTC 2 cut(s) 187, 272
Tru1I TTAA 6 cut(s) 84, 197, 225, 348, 405, 809
Tru9I TTAA 6 cut(s) 84, 197, 225, 348, 405, 809
TscAI CASTG 1 cut(s) 236
TspDTI ATGAA 4 cut(s) 17, 130, 153, 279
TspGWI ACGGA 1 cut(s) 291
TspRI CASTG 1 cut(s) 236
VpaK11BI GGWCC 2 cut(s) 462, 607
VspI ATTAAT 1 cut(s) 405
XapI RAATTY 4 cut(s) 467, 487, 584, 692
XceI RCATGY 1 cut(s) 347
XspI CTAG 1 cut(s) 814
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.