Rroxscaffold_7G00208930

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000428
Physical Location & Seq
Forward (+)
59092740 .. 59094334
1595 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00208930.1

Sequence Viewer

Length: 1254 bp
ATGGCTGTGGACACAGTATTAAGCCGGCCTCAGTTACCTGACCACATTATCCACCAAATCATCCAACTCCTTCCTACCAAATCTGCTGTCCGCATGAGCTCTCTTTCCAAGCAATGTGAAGCTGCATGGTACACCCAACCTGTACTAGACTTCGATGAGGGCATGCCACGGGATGATACAACTGACAGCAACCTTCAACACATAAAGTTTATCAACATCTTGGATAGGTATTTGGACTACTTCCGTAATGATGAGAAAATCAAGCAGCAACTCTTAGATAAATTCAGGCTTCGCATCACTACTGACTTCTCAGTTAGTGAGTCTACTATGGTAGATGAGTTATTGAGTCTTGCAGTTCGAAGAAGCGTCAAAGAGTTGGACATTAGCATTGGAGGTAAACATGCAGCCTTATACTGTTTAACCCCGAAGAAGCCCCTAAATTTGGCGAAGTCTATAACGACCTTAAGTTTGGAGCATGTGACAATTAATGAAGATGAATCTAATCCTCATCTAAGCTTCCCGTCCTTGAAAACAATGTCGTTAAAAACTCTGCGATTCAGTCGCTCCTTGATATCTAGGTGCCCTTCCATCGAGACTTTATCAGTATCAACCAGTTCCATGTGTGATGGCTCGTCAACATTCGTAGTTTCAAATTCCAATCTCAAATTCTTGGACATCACAAACTGCGATTTTTTTCAATTAGAAGTGAGAAGTACGAATCTAGAATCTTTTACCTTTGTTTCGGAGGATTACATTAGGCTCATCAGTTTGTCCAAGTGCAGAAACTTGAAATCTTTCAACATCCTCGCACAAAAACTGCACTACCTTTATATATCTGGATGCGGACATTCTGTGAAGGCCACAATCGATAGTTCCAGTCTAGAGTATGTTCAGTTTACTGGTTTTTTGAAGTACAAGCTTTCCATAAAAGCTCTAAATTTGTCAAGGGCAAGAATTACTCTTTGTCACGGAGAGCAGATCAGCTTCAACGAGCCATGGGGACATTTTACTTCACTGAGAGATTTTCTTGAAAGTTTTGCTCCCTGCTACCAAGAAATAATCCTACGTGTTGATCATGCTGAGATGGCGCAGGCTCTCATCTTTCCAGAAAATTTCAGGAAGACCGTCTCTCCACCATTGCCTATTCTTAAGCATTTTCGGATTCGCATCACTTCTCCGATGTTGGCGCGAAATTCTGACTTGATGGACTCATTGACTTGGATAGCACCTTCTGCAGAGATTCAAAGAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

417

Amino Acids

47.56

Weight (kDa)

8.02

Isoelectric Point (pI)

45.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 111 - 280 1.4e-08 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 579
AccI GTMKAC 1 cut(s) 323
AccII CGCG 1 cut(s) 1189
AciI CCGC 2 cut(s) 91, 843
AcsI RAATTY 7 cut(s) 281, 439, 652, 665, 937, 1111, 1192
AfaI GTAC 4 cut(s) 131, 144, 715, 914
AfiI CCNNNNNNNGG 1 cut(s) 442
AflII CTTAAG 2 cut(s) 463, 1148
AflIII ACRYGT 1 cut(s) 1066
AjuI GAANNNNNNNTTGG 2 cut(s) 650, 682
AluBI AGCT 6 cut(s) 99, 122, 516, 919, 932, 984
AluI AGCT 6 cut(s) 99, 122, 516, 919, 932, 984
Alw21I GWGCWC 1 cut(s) 101
Alw26I GTCTC 2 cut(s) 587, 1132
AoxI GGCC 2 cut(s) 26, 858
ApeKI GCWGC 3 cut(s) 122, 265, 404
ApoI RAATTY 7 cut(s) 281, 439, 652, 665, 937, 1111, 1192
ArsI GACNNNNNNTTYG 4 cut(s) 72, 104, 451, 483
AseI ATTAAT 1 cut(s) 486
Asp700I GAANNNNTTC 1 cut(s) 794
AspLEI GCGC 2 cut(s) 1090, 1189
AsuII TTCGAA 1 cut(s) 358
BaeGI GKGCMC 1 cut(s) 584
BanI GGYRCC 1 cut(s) 579
BanII GRGCYC 1 cut(s) 101
BbsI GAAGAC 1 cut(s) 1127
Bbv12I GWGCWC 1 cut(s) 101
BbvI GCAGC 3 cut(s) 109, 277, 416
BccI CCATC 4 cut(s) 596, 620, 1078, 1198
BclI TGATCA 1 cut(s) 1072
BcoDI GTCTC 2 cut(s) 587, 1132
BfaI CTAG 4 cut(s) 146, 576, 722, 881
BfmI CTRYAG 1 cut(s) 1233
BfrI CTTAAG 2 cut(s) 463, 1148
BisI GCNGC 3 cut(s) 123, 266, 405
BlsI GCNGC 3 cut(s) 124, 267, 406
BmiI GGNNCC 1 cut(s) 581
BmsI GCATC 3 cut(s) 303, 830, 1176
BpiI GAAGAC 1 cut(s) 1127
Bpu14I TTCGAA 1 cut(s) 358
Bsa29I ATCGAT 1 cut(s) 867
BsaAI YACGTR 1 cut(s) 1067
BsaBI GATNNNNATC 1 cut(s) 1166
BsaJI CCNNGG 2 cut(s) 167, 995
BsaXI ACNNNNNCTCC 2 cut(s) 1114, 1144
Bsc4I CCNNNNNNNGG 1 cut(s) 442
Bse118I RCCGGY 1 cut(s) 24
Bse1I ACTGG 3 cut(s) 612, 876, 904
Bse3DI GCAATG 2 cut(s) 119, 1136
Bse8I GATNNNNATC 1 cut(s) 1166
BseCI ATCGAT 1 cut(s) 867
BseDI CCNNGG 2 cut(s) 167, 995
BseGI GGATG 4 cut(s) 60, 178, 801, 845
BseJI GATNNNNATC 1 cut(s) 1166
BseLI CCNNNNNNNGG 1 cut(s) 442
BseMI GCAATG 2 cut(s) 119, 1136
BseMII CTCAG 4 cut(s) 44, 324, 1007, 1071
BseNI ACTGG 3 cut(s) 612, 876, 904
BseSI GKGCMC 1 cut(s) 584
BseXI GCAGC 3 cut(s) 109, 277, 416
BsgI GTGCAG 2 cut(s) 799, 803
Bsh1236I CGCG 1 cut(s) 1189
BshFI GGCC 2 cut(s) 28, 860
BshNI GGYRCC 1 cut(s) 579
BshVI ATCGAT 1 cut(s) 867
BsiHKAI GWGCWC 1 cut(s) 101
BsiSI CCGG 1 cut(s) 25
BslFI GGGAC 1 cut(s) 1014
BslI CCNNNNNNNGG 1 cut(s) 442
BsmAI GTCTC 2 cut(s) 587, 1132
BsmBI CGTCTC 1 cut(s) 1132
BsmFI GGGAC 1 cut(s) 1014
BsnI GGCC 2 cut(s) 28, 860
Bsp119I TTCGAA 1 cut(s) 358
Bsp1286I GDGCHC 2 cut(s) 101, 584
Bsp143I GATC 2 cut(s) 978, 1072
Bsp19I CCATGG 1 cut(s) 995
BspACI CCGC 2 cut(s) 91, 843
BspANI GGCC 2 cut(s) 28, 860
BspCNI CTCAG 4 cut(s) 43, 323, 1008, 1072
BspDI ATCGAT 1 cut(s) 867
BspFNI CGCG 1 cut(s) 1189
BspLI GGNNCC 1 cut(s) 581
BspMAI CTGCAG 1 cut(s) 1237
BspT104I TTCGAA 1 cut(s) 358
BspT107I GGYRCC 1 cut(s) 579
BspTI CTTAAG 2 cut(s) 463, 1148
BsrDI GCAATG 2 cut(s) 119, 1136
BsrFI RCCGGY 1 cut(s) 24
BsrI ACTGG 3 cut(s) 612, 876, 904
BssAI RCCGGY 1 cut(s) 24
BssECI CCNNGG 2 cut(s) 167, 995
BssMI GATC 2 cut(s) 978, 1072
BssT1I CCWWGG 1 cut(s) 995
Bst4CI ACNGT 3 cut(s) 16, 416, 1126
BstAFI CTTAAG 2 cut(s) 463, 1148
BstAPI GCANNNNNTGC 1 cut(s) 1232
BstBAI YACGTR 1 cut(s) 1067
BstBI TTCGAA 1 cut(s) 358
BstC8I GCNNGC 3 cut(s) 26, 164, 1092
BstDEI CTNAG 6 cut(s) 30, 274, 310, 512, 1016, 1080
BstDSI CCRYGG 2 cut(s) 167, 995
BstF5I GGATG 4 cut(s) 60, 178, 801, 845
BstFNI CGCG 1 cut(s) 1189
BstHHI GCGC 2 cut(s) 1090, 1189
BstKTI GATC 2 cut(s) 981, 1075
BstMAI GTCTC 2 cut(s) 587, 1132
BstMBI GATC 2 cut(s) 978, 1072
BstMWI GCNNNNNNNGC 2 cut(s) 1085, 1232
BstNSI RCATGY 3 cut(s) 166, 404, 479
BstSFI CTRYAG 1 cut(s) 1233
BstSLI GKGCMC 1 cut(s) 584
BstUI CGCG 1 cut(s) 1189
BstV1I GCAGC 3 cut(s) 109, 277, 416
BstV2I GAAGAC 1 cut(s) 1127
Bsu15I ATCGAT 1 cut(s) 867
BsuRI GGCC 2 cut(s) 28, 860
BsuTUI ATCGAT 1 cut(s) 867
BtgI CCRYGG 2 cut(s) 167, 995
BtsCI GGATG 4 cut(s) 60, 178, 801, 845
BtsIMutI CAGTG 1 cut(s) 1013
Cac8I GCNNGC 3 cut(s) 26, 164, 1092
CfoI GCGC 2 cut(s) 1090, 1189
Cfr10I RCCGGY 1 cut(s) 24
ClaI ATCGAT 1 cut(s) 867
CseI GACGC 1 cut(s) 355
Csp6I GTAC 4 cut(s) 130, 143, 714, 913
CviAII CATG 8 cut(s) 94, 126, 163, 401, 476, 619, 996, 1076
CviQI GTAC 4 cut(s) 130, 143, 714, 913
DdeI CTNAG 6 cut(s) 30, 274, 310, 512, 1016, 1080
DpnI GATC 2 cut(s) 980, 1074
DpnII GATC 2 cut(s) 978, 1072
Ecl136II GAGCTC 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 995
Eco24I GRGCYC 1 cut(s) 101
Eco32I GATATC 1 cut(s) 573
Eco53kI GAGCTC 1 cut(s) 99
EcoICRI GAGCTC 1 cut(s) 99
EcoRV GATATC 1 cut(s) 573
EcoT14I CCWWGG 1 cut(s) 995
EcoT38I GRGCYC 1 cut(s) 101
ErhI CCWWGG 1 cut(s) 995
Esp3I CGTCTC 1 cut(s) 1132
FaeI CATG 8 cut(s) 97, 129, 166, 404, 479, 622, 999, 1079
FaqI GGGAC 1 cut(s) 1014
FatI CATG 8 cut(s) 93, 125, 162, 400, 475, 618, 995, 1075
FbaI TGATCA 1 cut(s) 1072
FblI GTMKAC 1 cut(s) 323
Fnu4HI GCNGC 3 cut(s) 123, 266, 405
FokI GGATG 4 cut(s) 47, 185, 788, 852
FriOI GRGCYC 1 cut(s) 101
Fsp4HI GCNGC 3 cut(s) 123, 266, 405
FspBI CTAG 4 cut(s) 146, 576, 722, 881
GlaI GCGC 2 cut(s) 1089, 1188
GluI GCNGC 3 cut(s) 123, 266, 405
HaeIII GGCC 2 cut(s) 28, 860
HapII CCGG 1 cut(s) 25
HgaI GACGC 1 cut(s) 355
HhaI GCGC 2 cut(s) 1090, 1189
Hin1II CATG 8 cut(s) 97, 129, 166, 404, 479, 622, 999, 1079
Hin6I GCGC 2 cut(s) 1088, 1187
HinP1I GCGC 2 cut(s) 1088, 1187
HincII GTYRAC 1 cut(s) 636
HindII GTYRAC 1 cut(s) 636
HindIII AAGCTT 2 cut(s) 514, 917
HinfI GANTC 9 cut(s) 320, 346, 497, 555, 718, 725, 1162, 1208, 1240
HpaII CCGG 1 cut(s) 25
Hpy166II GTNNAC 6 cut(s) 10, 132, 324, 398, 636, 897
Hpy188I TCNGA 4 cut(s) 745, 1161, 1179, 1198
Hpy188III TCNNGA 7 cut(s) 592, 722, 837, 881, 1028, 1106, 1117
Hpy8I GTNNAC 6 cut(s) 10, 132, 324, 398, 636, 897
HpyAV CCTTC 5 cut(s) 80, 203, 594, 850, 1239
HpyCH4III ACNGT 3 cut(s) 16, 416, 1126
HpyCH4IV ACGT 1 cut(s) 1066
HpyCH4V TGCA 6 cut(s) 125, 353, 404, 780, 820, 1235
HpyF10VI GCNNNNNNNGC 2 cut(s) 1085, 1232
HpyF3I CTNAG 6 cut(s) 30, 274, 310, 512, 1016, 1080
HpySE526I ACGT 1 cut(s) 1066
Hsp92II CATG 8 cut(s) 97, 129, 166, 404, 479, 622, 999, 1079
HspAI GCGC 2 cut(s) 1088, 1187
KroI GCCGGC 1 cut(s) 24
KroNI GCCGGC 1 cut(s) 26
Ksp22I TGATCA 1 cut(s) 1072
Kzo9I GATC 2 cut(s) 978, 1072
LmnI GCTCC 3 cut(s) 472, 569, 1045
Lsp1109I GCAGC 3 cut(s) 109, 277, 416
LweI GCATC 3 cut(s) 303, 830, 1176
MaeI CTAG 4 cut(s) 146, 576, 722, 881
MaeII ACGT 1 cut(s) 1066
MaeIII GTNAC 3 cut(s) 33, 478, 965
MalI GATC 2 cut(s) 980, 1074
MboI GATC 2 cut(s) 978, 1072
MboII GAAGA 4 cut(s) 372, 439, 503, 1132
MhlI GDGCHC 2 cut(s) 101, 584
MlyI GAGTC 3 cut(s) 329, 355, 1202
MmeI TCCRAC 2 cut(s) 88, 357
MnlI CCTC 6 cut(s) 39, 151, 386, 516, 739, 815
MroNI GCCGGC 1 cut(s) 24
MroXI GAANNNNTTC 1 cut(s) 794
MseI TTAA 6 cut(s) 20, 419, 464, 486, 542, 1149
MspCI CTTAAG 2 cut(s) 463, 1148
MspI CCGG 1 cut(s) 25
MvnI CGCG 1 cut(s) 1189
MwoI GCNNNNNNNGC 2 cut(s) 1085, 1232
NaeI GCCGGC 1 cut(s) 26
NcoI CCATGG 1 cut(s) 995
NdeII GATC 2 cut(s) 978, 1072
NgoMIV GCCGGC 1 cut(s) 24
NlaIII CATG 8 cut(s) 97, 129, 166, 404, 479, 622, 999, 1079
NlaIV GGNNCC 1 cut(s) 581
NmuCI GTSAC 2 cut(s) 478, 965
NspI RCATGY 3 cut(s) 166, 404, 479
NspV TTCGAA 1 cut(s) 358
PaeI GCATGC 1 cut(s) 166
PdiI GCCGGC 1 cut(s) 26
PdmI GAANNNNTTC 1 cut(s) 794
PfeI GAWTC 6 cut(s) 497, 555, 718, 725, 1162, 1240
PkrI GCNGC 3 cut(s) 124, 267, 406
PleI GAGTC 3 cut(s) 328, 354, 1202
PpsI GAGTC 3 cut(s) 328, 354, 1202
Ppu21I YACGTR 1 cut(s) 1067
PshBI ATTAAT 1 cut(s) 486
Psp124BI GAGCTC 1 cut(s) 101
PspN4I GGNNCC 1 cut(s) 581
PstI CTGCAG 1 cut(s) 1237
RsaI GTAC 4 cut(s) 131, 144, 715, 914
RsaNI GTAC 4 cut(s) 130, 143, 714, 913
SacI GAGCTC 1 cut(s) 101
SaqAI TTAA 6 cut(s) 20, 419, 464, 486, 542, 1149
SatI GCNGC 3 cut(s) 123, 266, 405
Sau3AI GATC 2 cut(s) 978, 1072
SchI GAGTC 3 cut(s) 329, 355, 1202
SduI GDGCHC 2 cut(s) 101, 584
SfaNI GCATC 3 cut(s) 303, 830, 1176
SfcI CTRYAG 1 cut(s) 1233
SfuI TTCGAA 1 cut(s) 358
SmlI CTYRAG 2 cut(s) 463, 1148
SmoI CTYRAG 2 cut(s) 463, 1148
SphI GCATGC 1 cut(s) 166
SsiI CCGC 2 cut(s) 91, 843
SspMI CTAG 4 cut(s) 146, 576, 722, 881
SstI GAGCTC 1 cut(s) 101
StyI CCWWGG 1 cut(s) 995
TaaI ACNGT 3 cut(s) 16, 416, 1126
TaiI ACGT 1 cut(s) 1069
TaqI TCGA 4 cut(s) 153, 358, 591, 867
TatI WGTACW 2 cut(s) 142, 912
TfiI GAWTC 6 cut(s) 497, 555, 718, 725, 1162, 1240
Tru1I TTAA 6 cut(s) 20, 419, 464, 486, 542, 1149
Tru9I TTAA 6 cut(s) 20, 419, 464, 486, 542, 1149
TscAI CASTG 1 cut(s) 1020
TseFI GTSAC 2 cut(s) 478, 965
TseI GCWGC 3 cut(s) 122, 265, 404
Tsp45I GTSAC 2 cut(s) 478, 965
TspDTI ATGAA 2 cut(s) 504, 510
TspGWI ACGGA 2 cut(s) 233, 984
TspRI CASTG 1 cut(s) 1020
Vha464I CTTAAG 2 cut(s) 463, 1148
VspI ATTAAT 1 cut(s) 486
XapI RAATTY 7 cut(s) 281, 439, 652, 665, 937, 1111, 1192
XbaI TCTAGA 2 cut(s) 721, 880
XceI RCATGY 3 cut(s) 166, 404, 479
XmiI GTMKAC 1 cut(s) 323
XmnI GAANNNNTTC 1 cut(s) 794
XspI CTAG 4 cut(s) 146, 576, 722, 881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.