Rroxscaffold_175G00432410

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000175
OG0000428
Physical Location & Seq
Reverse (-)
1149357 .. 1152078
2722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_175G00432410.1

Sequence Viewer

Length: 1221 bp
ATGCATCAAATCATCCTTCTACTTCCCACTAAACCTGCCATTCGCATGAGTTCTCTTTCCAAGCAATATGAAGGTATATGGTCTGCACTCCGCGTGTTAGATTTTAAAGAGGGCGAGCTGCCACATGATGATGATGATGCCAACGACAAGCATGCTAAATTTATCAACATCTTGGTCAGGTACTTGGCATTCCGTAAGAAAGACGAGCAGCAACCACTCTTAGATAAATTGACTCTTCACATGAGGTACTTATTTGGAGATGAAGATACTATCATATGTAAGGTGTTGAGTAATTCACTTGAAAGACATGTCAAGGAATTAGACATAAGCCTCAGAAGTAAACATCAGGAGGTTGAATGCTGCTATTGCTTATCCCGCACAGTGCTCATGAATGCCAAAAATTTGACTATTCTGAATTTGGAATATCTGAGGATTAAGGAAATTGACAGTGCTGAGACTGAGCCTTTGTGTCCCTCTTTGAAAACTTTGTCCCTCAAGACCGTGCATTTTGATGACAAGGCTCTGTTCTACTTAGTTTTGGGGTGCCCTGCTGTGGAGTACTTGTCATTAACATCATGTTCCCTTGACACCCCGGTGCTTCATGTTTCAAGTTCCAGTCTCAGATCCTTAGAAGTCAAGAATTGTGATGCTGAGCAGATTGAAGTTGATAAAGCCACAAATCTTGAGTCTTTTACATTTGTTTCAAAGTTTCCTCTCCTTCAGAGTATAACCTTAAATGATACTAGCAACTTGAATTATATCAAAATCCGTGCTCAGTACCTGACCTACTTTGGATTATTTGGATGCCATGATCATTTGAATGCTACAGTTAATACTCCAAGTTTACATCACCTTGATATCCATGCTCATCTGACAGCCAAAGTTTCTGTCAATGCTCCAAACCTATGGTTGGCCAGCATCACACTTGAGGAAGAAGAATTTTCCAACTATAACTGGTCCTGGAAACATTTTGCTACTTTCTGCGACTTTCTTAAAGCATTCTGCTCCAAAAATATAATCCTCGTTATGCGCGACTTTAAGGCTATCATCTTTCCTGACAATTTCAAATCAGCCTGCTATCCACCATTGCCCAGTACCAATCGTCTTGACCTCATAATGTCTAACCCTCCGACAGAGGAGTCTGATATTTCTGACCTGGAGGAGTCCTTGCTTTGGATGGCTCCTAATGCAGAGGAGATGGTATTTGCACAGTTAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box LRR_2

Protein Analysis

406

Amino Acids

46.47

Weight (kDa)

5.46

Isoelectric Point (pI)

46.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 91 - 236 6.4e-08 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 99 - 234 6.7e-15 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1138
Acc36I ACCTGC 1 cut(s) 43
AccB1I GGYRCC 1 cut(s) 543
AccII CGCG 2 cut(s) 93, 1032
AciI CCGC 2 cut(s) 91, 376
AclWI GGATC 1 cut(s) 618
AcoI YGGCCR 1 cut(s) 912
AcsI RAATTY 4 cut(s) 158, 400, 415, 938
AcuI CTGAAG 1 cut(s) 704
AfaI GTAC 5 cut(s) 182, 248, 560, 779, 1096
AfiI CCNNNNNNNGG 3 cut(s) 553, 910, 1173
AflIII ACRYGT 1 cut(s) 307
AgsI TTSAA 9 cut(s) 302, 356, 481, 609, 662, 705, 754, 820, 1066
AjnI CCWGG 2 cut(s) 959, 1155
AleI CACNNNNGTG 1 cut(s) 593
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
Alw21I GWGCWC 2 cut(s) 387, 775
Alw26I GTCTC 2 cut(s) 449, 623
AlwI GGATC 1 cut(s) 618
AlwNI CAGNNNCTG 1 cut(s) 781
AoxI GGCC 1 cut(s) 912
ApeKI GCWGC 3 cut(s) 118, 208, 360
ApoI RAATTY 4 cut(s) 158, 400, 415, 938
ArsI GACNNNNNNTTYG 6 cut(s) 448, 480, 671, 703, 873, 905
AspLEI GCGC 1 cut(s) 1032
AspS9I GGNCC 1 cut(s) 957
AsuC2I CCSGG 1 cut(s) 593
AsuHPI GGTGA 1 cut(s) 842
AvaII GGWCC 1 cut(s) 957
BaeGI GKGCMC 1 cut(s) 548
BalI TGGCCA 1 cut(s) 914
BanI GGYRCC 1 cut(s) 543
Bbv12I GWGCWC 2 cut(s) 387, 775
BbvI GCAGC 3 cut(s) 105, 220, 347
BccI CCATC 2 cut(s) 1171, 1192
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BciT130I CCWGG 2 cut(s) 961, 1157
BclI TGATCA 1 cut(s) 811
BcnI CCSGG 1 cut(s) 593
BcoDI GTCTC 2 cut(s) 449, 623
BfaI CTAG 1 cut(s) 744
BfmI CTRYAG 1 cut(s) 825
BfuAI ACCTGC 1 cut(s) 43
BisI GCNGC 3 cut(s) 119, 209, 361
BlpI GCTNAGC 1 cut(s) 651
BlsI GCNGC 3 cut(s) 120, 210, 362
BmcAI AGTACT 1 cut(s) 560
Bme1390I CCNGG 3 cut(s) 593, 961, 1157
Bme18I GGWCC 1 cut(s) 957
BmgT120I GGNCC 1 cut(s) 957
BmiI GGNNCC 2 cut(s) 545, 1182
BmrFI CCNGG 3 cut(s) 593, 961, 1157
BmrI ACTGGG 1 cut(s) 1086
BmsI GCATC 5 cut(s) 13, 127, 637, 794, 927
BmuI ACTGGG 1 cut(s) 1086
BpmI CTGGAG 1 cut(s) 1178
Bpu1102I GCTNAGC 1 cut(s) 651
BpuEI CTTGAG 3 cut(s) 479, 704, 947
BpuMI CCSGG 1 cut(s) 593
BsaJI CCNNGG 1 cut(s) 591
BsaXI ACNNNNNCTCC 2 cut(s) 548, 578
Bsc4I CCNNNNNNNGG 3 cut(s) 553, 910, 1173
Bse1I ACTGG 3 cut(s) 615, 959, 1092
Bse3DI GCAATG 1 cut(s) 1085
BseBI CCWGG 2 cut(s) 961, 1157
BseDI CCNNGG 1 cut(s) 591
BseGI GGATG 3 cut(s) 12, 809, 1182
BseLI CCNNNNNNNGG 3 cut(s) 553, 910, 1173
BseMI GCAATG 1 cut(s) 1085
BseMII CTCAG 7 cut(s) 346, 419, 444, 450, 634, 642, 788
BseNI ACTGG 3 cut(s) 615, 959, 1092
BseRI GAGGAG 3 cut(s) 1151, 1175, 1208
BseSI GKGCMC 1 cut(s) 548
BseXI GCAGC 3 cut(s) 105, 220, 347
BsgI GTGCAG 1 cut(s) 69
Bsh1236I CGCG 2 cut(s) 93, 1032
BshFI GGCC 1 cut(s) 914
BshNI GGYRCC 1 cut(s) 543
BsiHKAI GWGCWC 2 cut(s) 387, 775
BsiSI CCGG 1 cut(s) 593
BslFI GGGAC 2 cut(s) 456, 475
BslI CCNNNNNNNGG 3 cut(s) 553, 910, 1173
BsmAI GTCTC 2 cut(s) 449, 623
BsmFI GGGAC 2 cut(s) 456, 475
BsmI GAATGC 5 cut(s) 188, 362, 397, 826, 998
BsnI GGCC 1 cut(s) 914
Bsp1286I GDGCHC 3 cut(s) 387, 548, 775
Bsp143I GATC 2 cut(s) 623, 811
Bsp1720I GCTNAGC 1 cut(s) 651
BspACI CCGC 2 cut(s) 91, 376
BspANI GGCC 1 cut(s) 914
BspCNI CTCAG 7 cut(s) 345, 420, 445, 451, 633, 643, 787
BspFNI CGCG 2 cut(s) 93, 1032
BspHI TCATGA 1 cut(s) 387
BspLI GGNNCC 2 cut(s) 545, 1182
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 1 cut(s) 618
BspT107I GGYRCC 1 cut(s) 543
BsrDI GCAATG 1 cut(s) 1085
BsrI ACTGG 3 cut(s) 615, 959, 1092
BssECI CCNNGG 1 cut(s) 591
BssMI GATC 2 cut(s) 623, 811
Bst2UI CCWGG 2 cut(s) 961, 1157
Bst4CI ACNGT 5 cut(s) 382, 449, 502, 829, 1212
Bst6I CTCTTC 1 cut(s) 240
BstC8I GCNNGC 4 cut(s) 116, 153, 916, 1075
BstF5I GGATG 3 cut(s) 12, 809, 1182
BstFNI CGCG 2 cut(s) 93, 1032
BstHHI GCGC 1 cut(s) 1032
BstKTI GATC 2 cut(s) 626, 814
BstMAI GTCTC 2 cut(s) 449, 623
BstMBI GATC 2 cut(s) 623, 811
BstMWI GCNNNNNNNGC 3 cut(s) 366, 375, 1187
BstNI CCWGG 2 cut(s) 961, 1157
BstNSI RCATGY 2 cut(s) 155, 311
BstSCI CCNGG 3 cut(s) 591, 959, 1155
BstSFI CTRYAG 1 cut(s) 825
BstSLI GKGCMC 1 cut(s) 548
BstUI CGCG 2 cut(s) 93, 1032
BstV1I GCAGC 3 cut(s) 105, 220, 347
BstX2I RGATCY 1 cut(s) 623
BstXI CCANNNNNNTGG 1 cut(s) 906
BstYI RGATCY 1 cut(s) 623
BsuRI GGCC 1 cut(s) 914
BtsCI GGATG 3 cut(s) 12, 809, 1182
BtsIMutI CAGTG 2 cut(s) 387, 454
BveI ACCTGC 1 cut(s) 43
Cac8I GCNNGC 4 cut(s) 116, 153, 916, 1075
CaiI CAGNNNCTG 1 cut(s) 781
CciI TCATGA 1 cut(s) 387
CfoI GCGC 1 cut(s) 1032
Cfr13I GGNCC 1 cut(s) 957
Csp6I GTAC 5 cut(s) 181, 247, 559, 778, 1095
CspCI CAANNNNNGTGG 2 cut(s) 664, 699
CviQI GTAC 5 cut(s) 181, 247, 559, 778, 1095
DpnI GATC 2 cut(s) 625, 813
DpnII GATC 2 cut(s) 623, 811
DraI TTTAAA 1 cut(s) 106
DrdI GACNNNNNNGTC 1 cut(s) 1138
DseDI GACNNNNNNGTC 1 cut(s) 1138
EaeI YGGCCR 1 cut(s) 912
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Eco32I GATATC 1 cut(s) 859
Eco47I GGWCC 1 cut(s) 957
Eco57I CTGAAG 1 cut(s) 704
EcoRII CCWGG 2 cut(s) 959, 1155
EcoRV GATATC 1 cut(s) 859
EcoT22I ATGCAT 1 cut(s) 6
FaqI GGGAC 2 cut(s) 456, 475
FauI CCCGC 1 cut(s) 383
FauNDI CATATG 1 cut(s) 275
FbaI TGATCA 1 cut(s) 811
Fnu4HI GCNGC 3 cut(s) 119, 209, 361
FokI GGATG 2 cut(s) 816, 1189
Fsp4HI GCNGC 3 cut(s) 119, 209, 361
FspBI CTAG 1 cut(s) 744
GlaI GCGC 1 cut(s) 1031
GluI GCNGC 3 cut(s) 119, 209, 361
GsuI CTGGAG 1 cut(s) 1178
HaeIII GGCC 1 cut(s) 914
HapII CCGG 1 cut(s) 593
HhaI GCGC 1 cut(s) 1032
Hin6I GCGC 1 cut(s) 1030
HinP1I GCGC 1 cut(s) 1030
HinfI GANTC 4 cut(s) 232, 686, 1139, 1163
HpaII CCGG 1 cut(s) 593
HphI GGTGA 1 cut(s) 842
Hpy166II GTNNAC 2 cut(s) 341, 845
Hpy188I TCNGA 9 cut(s) 335, 414, 429, 623, 723, 873, 1131, 1144, 1153
Hpy188III TCNNGA 7 cut(s) 347, 388, 496, 637, 683, 1055, 1106
Hpy8I GTNNAC 2 cut(s) 341, 845
HpyAV CCTTC 3 cut(s) 26, 65, 728
HpyCH4III ACNGT 5 cut(s) 382, 449, 502, 829, 1212
HpyCH4V TGCA 5 cut(s) 4, 86, 505, 1190, 1208
HpyF10VI GCNNNNNNNGC 3 cut(s) 366, 375, 1187
HspAI GCGC 1 cut(s) 1030
Ksp22I TGATCA 1 cut(s) 811
Kzo9I GATC 2 cut(s) 623, 811
LmnI GCTCC 3 cut(s) 901, 1010, 1186
Lsp1109I GCAGC 3 cut(s) 105, 220, 347
LweI GCATC 5 cut(s) 13, 127, 637, 794, 927
MaeI CTAG 1 cut(s) 744
MalI GATC 2 cut(s) 625, 813
MboI GATC 2 cut(s) 623, 811
MboII GAAGA 4 cut(s) 227, 275, 944, 947
MflI RGATCY 1 cut(s) 623
MhlI GDGCHC 3 cut(s) 387, 548, 775
MlsI TGGCCA 1 cut(s) 914
MluNI TGGCCA 1 cut(s) 914
MlyI GAGTC 4 cut(s) 226, 695, 1148, 1172
MmeI TCCRAC 2 cut(s) 969, 1154
Mox20I TGGCCA 1 cut(s) 914
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 914
MseI TTAA 7 cut(s) 105, 435, 569, 734, 831, 993, 1038
MslI CAYNNNNRTG 5 cut(s) 44, 129, 510, 593, 819
Msp20I TGGCCA 1 cut(s) 914
MspI CCGG 1 cut(s) 593
MspR9I CCNGG 3 cut(s) 593, 961, 1157
Mva1269I GAATGC 5 cut(s) 188, 362, 397, 826, 998
MvaI CCWGG 2 cut(s) 961, 1157
MvnI CGCG 2 cut(s) 93, 1032
MwoI GCNNNNNNNGC 3 cut(s) 366, 375, 1187
NciI CCSGG 1 cut(s) 593
NdeI CATATG 1 cut(s) 275
NdeII GATC 2 cut(s) 623, 811
NlaIV GGNNCC 2 cut(s) 545, 1182
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 155, 311
OliI CACNNNNGTG 1 cut(s) 593
PaeI GCATGC 1 cut(s) 155
PagI TCATGA 1 cut(s) 387
PciI ACATGT 1 cut(s) 307
PcsI WCGNNNNNNNCGW 1 cut(s) 1029
PctI GAATGC 5 cut(s) 188, 362, 397, 826, 998
PfoI TCCNGGA 1 cut(s) 959
PkrI GCNGC 3 cut(s) 120, 210, 362
PleI GAGTC 4 cut(s) 226, 694, 1147, 1171
PpsI GAGTC 4 cut(s) 226, 694, 1147, 1171
PscI ACATGT 1 cut(s) 307
Psp6I CCWGG 2 cut(s) 959, 1155
PspGI CCWGG 2 cut(s) 959, 1155
PspN4I GGNNCC 2 cut(s) 545, 1182
PspPI GGNCC 1 cut(s) 957
PstNI CAGNNNCTG 1 cut(s) 781
PsuI RGATCY 1 cut(s) 623
RsaI GTAC 5 cut(s) 182, 248, 560, 779, 1096
RsaNI GTAC 5 cut(s) 181, 247, 559, 778, 1095
RseI CAYNNNNRTG 5 cut(s) 44, 129, 510, 593, 819
SaqAI TTAA 7 cut(s) 105, 435, 569, 734, 831, 993, 1038
SatI GCNGC 3 cut(s) 119, 209, 361
Sau3AI GATC 2 cut(s) 623, 811
Sau96I GGNCC 1 cut(s) 957
ScaI AGTACT 1 cut(s) 560
SchI GAGTC 4 cut(s) 226, 695, 1148, 1172
ScrFI CCNGG 3 cut(s) 593, 961, 1157
SduI GDGCHC 3 cut(s) 387, 548, 775
SfaNI GCATC 5 cut(s) 13, 127, 637, 794, 927
SfcI CTRYAG 1 cut(s) 825
SinI GGWCC 1 cut(s) 957
SmiMI CAYNNNNRTG 5 cut(s) 44, 129, 510, 593, 819
SmlI CTYRAG 3 cut(s) 494, 683, 926
SmoI CTYRAG 3 cut(s) 494, 683, 926
SphI GCATGC 1 cut(s) 155
SsiI CCGC 2 cut(s) 91, 376
SspMI CTAG 1 cut(s) 744
StyD4I CCNGG 3 cut(s) 591, 959, 1155
TaaI ACNGT 5 cut(s) 382, 449, 502, 829, 1212
TatI WGTACW 1 cut(s) 558
Tru1I TTAA 7 cut(s) 105, 435, 569, 734, 831, 993, 1038
Tru9I TTAA 7 cut(s) 105, 435, 569, 734, 831, 993, 1038
TscAI CASTG 2 cut(s) 387, 454
TseI GCWGC 3 cut(s) 118, 208, 360
TspDTI ATGAA 4 cut(s) 84, 276, 404, 590
TspGWI ACGGA 2 cut(s) 182, 758
TspRI CASTG 2 cut(s) 387, 454
VpaK11BI GGWCC 1 cut(s) 957
XapI RAATTY 4 cut(s) 158, 400, 415, 938
XceI RCATGY 2 cut(s) 155, 311
XspI CTAG 1 cut(s) 744
ZrmI AGTACT 1 cut(s) 560
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.