FvH4_7g20111

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000428
Physical Location & Seq
Reverse (-)
16417231 .. 16419302
2072 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g20111.t1

Sequence Viewer

Length: 1143 bp
ATGGCAGAAGAAAAGCACGCCGTGAATCGTGCCATGGTGGCCGTCAACACGGCAAGTGGTCGACCCGAATTACCAGACCTCATCATAGAAGAAATCCTACGCCGTCTTCCCACCAAAGCTGCCGTCCGCTTGAGATTTCTTTCCAAGCAGTGGGAGGGTATATTGTCTTCTGCTCCAACATTAGATTTCGACGAGGGTGGTGATGATGAGTATGACCTCAACAAACTCGAACAACGTCATTATAAGTTTATCAACATGTTGAACAGATTCTTGTTAGAATGCGAGAAGAACAAACAGAAACAAGTCTTGGATAAATTTAAGCTTCGCATGACGAGCTTCTCAACGAGAGATAACATGATTGTGACCAAGTTGTTGAGTCATTCCTTTGAGAGAAGCGTGAAAGAAATAGATATCAGCACAAAAGATAGTAGATTGGACTGTGATCATCGAGGTAGGCTGAATCAGAACTTATATTATGGCGGCTTGACAAGGAGGAACCTTGTCAGTGTAAAATCTCTCACGTCTCTTAAACTGGAGTATGTTAGAATAAGGAAGCTTGGTACAGGCTCGGAGCCTACAGCAGAAACATGCCTATTTCCCTCTTTGAAGAGCATATCCTTCAATAGTGTTCACTTTGATGATAATGTCCACTTTTTTCCGGAGTGCCCTGCGGTTGAGTATGTGTCCTTGGTTTCATGTACTTATGCAGGCACCTGGATTTATATTACGAGTTCTAGTTTAAAATCCTTAGTAATCAAGCGTTGCTGGGCTAAAATAGCTCGTGTGAGCAAAGCTGTGAATCTGGAATCTGTTACAATTGTGTCATCAGATCTTAAGGTTGTGATCTTGACAGAATGCAGCAATTTGAAGTATATTGACATTCAAGCTCGGAGCCTGGTAAATTTTCATTTAAAAGGGTGCCATGATGTGAATGGCACAATCAACGCTAGAAATCTGTGCTCTTTTAGCTTTGAAGGTTACTTGATGAAGTCAAAATTTTCTTTAAGTGCTCCAAGGTTAAAAGTGGCTCGCATCATATTATGGGACGATATTTGGGATGTGGAATCATCCAGCAGCTTCGACGAGCCATGGAAACATTTTCCTAAACTGACAGATTTTCTAAAACAATTTGGTAGCTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box LRR_2

Protein Analysis

381

Amino Acids

43.48

Weight (kDa)

8.99

Isoelectric Point (pI)

44.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 23 - 57 1.1e-06 F-box domain
LRR_At5g56370 PF24758 166 - 275 3.8e-07 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 243
AccB1I GGYRCC 2 cut(s) 710, 918
AccB7I CCANNNNNTGG 1 cut(s) 150
AccI GTMKAC 1 cut(s) 61
AccIII TCCGGA 1 cut(s) 658
AciI CCGC 3 cut(s) 127, 480, 671
AcoI YGGCCR 1 cut(s) 39
AcsI RAATTY 3 cut(s) 314, 901, 995
AdeI CACNNNGTG 1 cut(s) 22
AfaI GTAC 2 cut(s) 562, 700
AfiI CCNNNNNNNGG 1 cut(s) 150
AflII CTTAAG 1 cut(s) 833
AflIII ACRYGT 1 cut(s) 255
AgsI TTSAA 6 cut(s) 262, 607, 622, 868, 884, 974
AjiI CACGTC 1 cut(s) 522
AjnI CCWGG 2 cut(s) 713, 894
AjuI GAANNNNNNNTTGG 2 cut(s) 290, 322
Alw21I GWGCWC 2 cut(s) 962, 1012
Alw26I GTCTC 1 cut(s) 528
Aor13HI TCCGGA 1 cut(s) 658
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 3 cut(s) 119, 858, 1074
ApoI RAATTY 3 cut(s) 314, 901, 995
ArsI GACNNNNNNTTYG 2 cut(s) 108, 140
Asp700I GAANNNNTTC 1 cut(s) 266
AsuHPI GGTGA 1 cut(s) 212
BaeGI GKGCMC 1 cut(s) 668
BanI GGYRCC 2 cut(s) 710, 918
BarI GAAGNNNNNNTAC 4 cut(s) 81, 113, 151, 183
BauI CACGAG 1 cut(s) 780
BbsI GAAGAC 2 cut(s) 98, 159
Bbv12I GWGCWC 2 cut(s) 962, 1012
BbvI GCAGC 3 cut(s) 106, 870, 1086
BceAI ACGGC 5 cut(s) 5, 26, 66, 87, 107
BciT130I CCWGG 2 cut(s) 715, 896
BclI TGATCA 1 cut(s) 442
BcoDI GTCTC 1 cut(s) 528
BfaI CTAG 2 cut(s) 735, 948
BfmI CTRYAG 1 cut(s) 576
BfrI CTTAAG 1 cut(s) 833
BglI GCCNNNNNGGC 1 cut(s) 38
BglII AGATCT 1 cut(s) 829
BisI GCNGC 4 cut(s) 120, 481, 859, 1075
BlsI GCNGC 4 cut(s) 121, 482, 860, 1076
Bme1390I CCNGG 2 cut(s) 715, 896
BmgBI CACGTC 1 cut(s) 522
BmiI GGNNCC 5 cut(s) 497, 573, 712, 893, 920
BmrFI CCNGG 2 cut(s) 715, 896
BmsI GCATC 1 cut(s) 1041
BpiI GAAGAC 2 cut(s) 98, 159
BpmI CTGGAG 1 cut(s) 554
BpuEI CTTGAG 1 cut(s) 151
BsaJI CCNNGG 4 cut(s) 33, 687, 1013, 1088
BsaWI WCCGGW 1 cut(s) 658
Bsc4I CCNNNNNNNGG 1 cut(s) 150
Bse1I ACTGG 1 cut(s) 537
BseAI TCCGGA 1 cut(s) 658
BseBI CCWGG 2 cut(s) 715, 896
BseDI CCNNGG 4 cut(s) 33, 687, 1013, 1088
BseGI GGATG 2 cut(s) 1063, 1067
BseLI CCNNNNNNNGG 1 cut(s) 150
BseNI ACTGG 1 cut(s) 537
BseSI GKGCMC 1 cut(s) 668
BseXI GCAGC 3 cut(s) 106, 870, 1086
BseYI CCCAGC 1 cut(s) 765
BshFI GGCC 1 cut(s) 41
BshNI GGYRCC 2 cut(s) 710, 918
BsiHKAI GWGCWC 2 cut(s) 962, 1012
BsiSI CCGG 1 cut(s) 659
BslFI GGGAC 1 cut(s) 1058
BslI CCNNNNNNNGG 1 cut(s) 150
BsmAI GTCTC 1 cut(s) 528
BsmBI CGTCTC 1 cut(s) 528
BsmFI GGGAC 1 cut(s) 1058
BsmI GAATGC 2 cut(s) 284, 860
BsnI GGCC 1 cut(s) 41
Bsp1286I GDGCHC 3 cut(s) 668, 962, 1012
Bsp13I TCCGGA 1 cut(s) 658
Bsp143I GATC 3 cut(s) 442, 829, 843
Bsp19I CCATGG 2 cut(s) 33, 1088
BspACI CCGC 3 cut(s) 127, 480, 671
BspANI GGCC 1 cut(s) 41
BspEI TCCGGA 1 cut(s) 658
BspLI GGNNCC 5 cut(s) 497, 573, 712, 893, 920
BspQI GCTCTTC 1 cut(s) 602
BspT107I GGYRCC 2 cut(s) 710, 918
BspTI CTTAAG 1 cut(s) 833
BsrI ACTGG 1 cut(s) 537
BssECI CCNNGG 4 cut(s) 33, 687, 1013, 1088
BssMI GATC 3 cut(s) 442, 829, 843
BssSI CACGAG 1 cut(s) 780
BssT1I CCWWGG 4 cut(s) 33, 687, 1013, 1088
Bst2BI CACGAG 1 cut(s) 780
Bst2UI CCWGG 2 cut(s) 715, 896
Bst4CI ACNGT 1 cut(s) 440
Bst6I CTCTTC 1 cut(s) 602
BstAFI CTTAAG 1 cut(s) 833
BstC8I GCNNGC 3 cut(s) 18, 709, 1030
BstDEI CTNAG 1 cut(s) 748
BstDSI CCRYGG 2 cut(s) 33, 1088
BstF5I GGATG 2 cut(s) 1063, 1067
BstKTI GATC 3 cut(s) 445, 832, 846
BstMAI GTCTC 1 cut(s) 528
BstMBI GATC 3 cut(s) 442, 829, 843
BstMWI GCNNNNNNNGC 4 cut(s) 38, 333, 776, 966
BstNI CCWGG 2 cut(s) 715, 896
BstNSI RCATGY 2 cut(s) 259, 591
BstSCI CCNGG 2 cut(s) 713, 894
BstSFI CTRYAG 1 cut(s) 576
BstSLI GKGCMC 1 cut(s) 668
BstV1I GCAGC 3 cut(s) 106, 870, 1086
BstV2I GAAGAC 2 cut(s) 98, 159
BstX2I RGATCY 1 cut(s) 829
BstYI RGATCY 1 cut(s) 829
BsuRI GGCC 1 cut(s) 41
BtgI CCRYGG 2 cut(s) 33, 1088
BtrI CACGTC 1 cut(s) 522
BtsCI GGATG 2 cut(s) 1063, 1067
BtsI GCAGTG 1 cut(s) 155
BtsIMutI CAGTG 2 cut(s) 155, 511
Cac8I GCNNGC 3 cut(s) 18, 709, 1030
Csp6I GTAC 2 cut(s) 561, 699
CviAII CATG 8 cut(s) 34, 256, 328, 355, 588, 696, 923, 1089
CviQI GTAC 2 cut(s) 561, 699
DdeI CTNAG 1 cut(s) 748
DpnI GATC 3 cut(s) 444, 831, 845
DpnII GATC 3 cut(s) 442, 829, 843
DraI TTTAAA 2 cut(s) 741, 912
DraIII CACNNNGTG 1 cut(s) 22
EaeI YGGCCR 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 602
EarI CTCTTC 1 cut(s) 602
Eco130I CCWWGG 4 cut(s) 33, 687, 1013, 1088
Eco32I GATATC 1 cut(s) 412
EcoRII CCWGG 2 cut(s) 713, 894
EcoRV GATATC 1 cut(s) 412
EcoT14I CCWWGG 4 cut(s) 33, 687, 1013, 1088
ErhI CCWWGG 4 cut(s) 33, 687, 1013, 1088
Esp3I CGTCTC 1 cut(s) 528
FaeI CATG 8 cut(s) 37, 259, 331, 358, 591, 699, 926, 1092
FaqI GGGAC 1 cut(s) 1058
FatI CATG 8 cut(s) 33, 255, 327, 354, 587, 695, 922, 1088
FbaI TGATCA 1 cut(s) 442
FblI GTMKAC 1 cut(s) 61
Fnu4HI GCNGC 4 cut(s) 120, 481, 859, 1075
FokI GGATG 2 cut(s) 1054, 1070
Fsp4HI GCNGC 4 cut(s) 120, 481, 859, 1075
FspBI CTAG 2 cut(s) 735, 948
GluI GCNGC 4 cut(s) 120, 481, 859, 1075
GsaI CCCAGC 1 cut(s) 769
GsuI CTGGAG 1 cut(s) 554
HaeIII GGCC 1 cut(s) 41
HapII CCGG 1 cut(s) 659
Hin1II CATG 8 cut(s) 37, 259, 331, 358, 591, 699, 926, 1092
HincII GTYRAC 2 cut(s) 46, 62
HindII GTYRAC 2 cut(s) 46, 62
HindIII AAGCTT 2 cut(s) 320, 554
HinfI GANTC 7 cut(s) 25, 267, 376, 460, 799, 806, 1064
HpaII CCGG 1 cut(s) 659
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 4 cut(s) 46, 62, 631, 649
Hpy188I TCNGA 4 cut(s) 465, 571, 829, 891
Hpy188III TCNNGA 3 cut(s) 659, 803, 847
Hpy8I GTNNAC 4 cut(s) 46, 62, 631, 649
Hpy99I CGWCG 2 cut(s) 194, 1085
HpyAV CCTTC 2 cut(s) 628, 968
HpyCH4III ACNGT 1 cut(s) 440
HpyCH4IV ACGT 2 cut(s) 235, 521
HpyCH4V TGCA 2 cut(s) 707, 858
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 333, 776, 966
HpyF3I CTNAG 1 cut(s) 748
HpySE526I ACGT 2 cut(s) 235, 521
Hsp92II CATG 8 cut(s) 37, 259, 331, 358, 591, 699, 926, 1092
Kpn2I TCCGGA 1 cut(s) 658
Ksp22I TGATCA 1 cut(s) 442
Kzo9I GATC 3 cut(s) 442, 829, 843
LguI GCTCTTC 1 cut(s) 602
LmnI GCTCC 4 cut(s) 178, 571, 891, 1015
Lsp1109I GCAGC 3 cut(s) 106, 870, 1086
LweI GCATC 1 cut(s) 1041
MaeI CTAG 2 cut(s) 735, 948
MaeII ACGT 2 cut(s) 235, 521
MaeIII GTNAC 3 cut(s) 361, 811, 977
MalI GATC 3 cut(s) 444, 831, 845
MboI GATC 3 cut(s) 442, 829, 843
MboII GAAGA 6 cut(s) 20, 98, 101, 159, 298, 619
MfeI CAATTG 1 cut(s) 816
MflI RGATCY 1 cut(s) 829
MhlI GDGCHC 3 cut(s) 668, 962, 1012
MluCI AATT 7 cut(s) 68, 314, 816, 862, 901, 995, 1127
MlyI GAGTC 1 cut(s) 385
MmeI TCCRAC 1 cut(s) 200
MnlI CCTC 7 cut(s) 89, 148, 187, 227, 443, 486, 610
MroI TCCGGA 1 cut(s) 658
MroXI GAANNNNTTC 1 cut(s) 266
MseI TTAA 7 cut(s) 318, 528, 740, 834, 911, 1004, 1019
MslI CAYNNNNRTG 2 cut(s) 359, 636
MspCI CTTAAG 1 cut(s) 833
MspI CCGG 1 cut(s) 659
MspR9I CCNGG 2 cut(s) 715, 896
MunI CAATTG 1 cut(s) 816
Mva1269I GAATGC 2 cut(s) 284, 860
MvaI CCWGG 2 cut(s) 715, 896
MwoI GCNNNNNNNGC 4 cut(s) 38, 333, 776, 966
NcoI CCATGG 2 cut(s) 33, 1088
NdeII GATC 3 cut(s) 442, 829, 843
NlaIII CATG 8 cut(s) 37, 259, 331, 358, 591, 699, 926, 1092
NlaIV GGNNCC 5 cut(s) 497, 573, 712, 893, 920
NmuCI GTSAC 1 cut(s) 361
NspI RCATGY 2 cut(s) 259, 591
PciI ACATGT 1 cut(s) 255
PciSI GCTCTTC 1 cut(s) 602
PctI GAATGC 2 cut(s) 284, 860
PdmI GAANNNNTTC 1 cut(s) 266
PfeI GAWTC 6 cut(s) 25, 267, 460, 799, 806, 1064
PflMI CCANNNNNTGG 1 cut(s) 150
PkrI GCNGC 4 cut(s) 121, 482, 860, 1076
PleI GAGTC 1 cut(s) 384
PpsI GAGTC 1 cut(s) 384
PscI ACATGT 1 cut(s) 255
PsiI TTATAA 1 cut(s) 243
Psp6I CCWGG 2 cut(s) 713, 894
PspFI CCCAGC 1 cut(s) 765
PspGI CCWGG 2 cut(s) 713, 894
PspN4I GGNNCC 5 cut(s) 497, 573, 712, 893, 920
PsuI RGATCY 1 cut(s) 829
RsaI GTAC 2 cut(s) 562, 700
RsaNI GTAC 2 cut(s) 561, 699
RseI CAYNNNNRTG 2 cut(s) 359, 636
SalI GTCGAC 1 cut(s) 60
SapI GCTCTTC 1 cut(s) 602
SaqAI TTAA 7 cut(s) 318, 528, 740, 834, 911, 1004, 1019
SatI GCNGC 4 cut(s) 120, 481, 859, 1075
Sau3AI GATC 3 cut(s) 442, 829, 843
SchI GAGTC 1 cut(s) 385
ScrFI CCNGG 2 cut(s) 715, 896
SduI GDGCHC 3 cut(s) 668, 962, 1012
SfaNI GCATC 1 cut(s) 1041
SfcI CTRYAG 1 cut(s) 576
SmiMI CAYNNNNRTG 2 cut(s) 359, 636
SmlI CTYRAG 2 cut(s) 130, 833
SmoI CTYRAG 2 cut(s) 130, 833
Sse9I AATT 7 cut(s) 68, 314, 816, 862, 901, 995, 1127
SsiI CCGC 3 cut(s) 127, 480, 671
SspMI CTAG 2 cut(s) 735, 948
StyD4I CCNGG 2 cut(s) 713, 894
StyI CCWWGG 4 cut(s) 33, 687, 1013, 1088
TaaI ACNGT 1 cut(s) 440
TaiI ACGT 2 cut(s) 238, 524
TaqI TCGA 5 cut(s) 61, 189, 228, 448, 1080
TasI AATT 7 cut(s) 68, 314, 816, 862, 901, 995, 1127
TatI WGTACW 1 cut(s) 698
TauI GCSGC 1 cut(s) 483
TfiI GAWTC 6 cut(s) 25, 267, 460, 799, 806, 1064
Tru1I TTAA 7 cut(s) 318, 528, 740, 834, 911, 1004, 1019
Tru9I TTAA 7 cut(s) 318, 528, 740, 834, 911, 1004, 1019
TscAI CASTG 2 cut(s) 155, 511
TseFI GTSAC 1 cut(s) 361
TseI GCWGC 3 cut(s) 119, 858, 1074
Tsp45I GTSAC 1 cut(s) 361
TspDTI ATGAA 3 cut(s) 684, 896, 1001
TspRI CASTG 2 cut(s) 155, 511
Van91I CCANNNNNTGG 1 cut(s) 150
Vha464I CTTAAG 1 cut(s) 833
XapI RAATTY 3 cut(s) 314, 901, 995
XceI RCATGY 2 cut(s) 259, 591
XcmI CCANNNNNNNNNTGG 1 cut(s) 929
XmiI GTMKAC 1 cut(s) 61
XmnI GAANNNNTTC 1 cut(s) 266
XspI CTAG 2 cut(s) 735, 948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.