Rh6AG092900

F-Box protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
13811663 .. 13813331
1669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG092900.1

Sequence Viewer

Length: 1470 bp
ATGACTACCGCAAAAAACCCTATACTACCTCAGTTACCTGATGATATTATTCACCAAATCCTCCGACTCCTTCCCACCAAATCAGCCGTTCGTATGCGCTGTGTTTCCAAGCAGTTCGAAGATCTGTGGTCAATAAATCTGGAAGAGGGCGATCCACTTGGCATGGATGACGACAATCCTCATCAGCACACAGAGTTCATCAACTTCTCGGAGACCTCTTTGGATTCCCGCAAAAACGACAAGCACGTAGATAAATTCAGGCTTCGCATGTTGAGGTACTCACCCAAAGACTCTGCTATTATATCTAGATATCTGCGTTTTGCTTTCAAGAGAAACGTCATGGTGTTAGATCTCAGCCTTAGATCTAAACCTGGGCTAGCATACTACAACATGTCCTCGGCCTTTCTCGAACGAAATTATATAACTACCTTGAATTTGGAATGTGTGAGAATGAACCTAGGAAATCGTGGTATAAAACTTCCATTGTTGAGAACTATGTCCTTCAAAAGTGTGGAAGTGGACTCGCAAGATTCTCTCACACGTTTGGTTTCATCGTGCCCTAACATTGTGAATTTGTCATTGAATTTGAAGTACGCTACTCATGAAAAGTTTTTCTTATCGTTAGAGACTCTTCTGGGTTTGAAGTATATAACTACTTTACATTTGGAGAATATGAAAATAAAGAGTGATACTGATGATAGGAGTGGTATGAATGGTAGGGAACGCCATCTGCCTTTAAAAACTATGAGCCTCAAAACTGTCCACTTGAAACTTTGCACTTTCCATGGCTTAATTTCCAGATGCCCCTCTGTTGAGTATTTGTCACTCAGTTCATGCTCTTTTCCTCGTCGGTCTTCGATTCAATTTTCATGTTCTAGTCTCAAAACCTTGGAAGTTACCGATTGCAATGCTCAGCAGTTTAATGTTGAAGCTACGAATCTGGAATCTTTCACCTTGGTTTCAGAAATCCCGCTACTTGGTTCAGAAATTGGGCAACTTACTCGAACTGCTTTGCATGAGTGCAAAAACTTGAAACATGTGAACATTCGCTCTGAGCACCTGCATGACATTGTATTAGGCGGCTGCAGAGATTGTGTCGAAGCCACAATTGATACCCCAAATCTAAGGTATTTCAACTTTATTGGCAATTTGAAGACCACGATTTCTATGCAAGCTCCAAATTTATTGGAAGCAAAAATTACACTTCTGTGCGGGAGACAATTCCCTACTTTGGTAGACTTTCTTAAAATATTTGGTCACAGCAAAAAAATACTCCTACATGTTGATGATGCTGAGGTGGATTTCGTCTTTCCAGAAAGCTTCAGAAAAAGTGTCACTTGTCCACCGTTGCCTAGTCTCAAGCATCTTGTAGTCTACCGTAAAGAAAAGCTCAAGGGAAGAGATTCAGATTTGCGGAATTCCATGCTTTGGATGGCACCTTGTGCAGAACTTAAAATAAAAAATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

489

Amino Acids

55.9

Weight (kDa)

9.05

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 9 - 44 4.8e-09 F-box domain
LRR_At5g56370 PF24758 210 - 359 2e-07 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1068
Acc36I ACCTGC 1 cut(s) 1068
AccB1I GGYRCC 1 cut(s) 1435
AccB7I CCANNNNNTGG 1 cut(s) 1428
AccI GTMKAC 2 cut(s) 1236, 1374
AciI CCGC 6 cut(s) 9, 229, 971, 1080, 1212, 1414
AclWI GGATC 1 cut(s) 146
AcsI RAATTY 6 cut(s) 254, 433, 571, 583, 1180, 1417
AcuI CTGAAG 1 cut(s) 1306
AdeI CACNNNGTG 1 cut(s) 1442
AfaI GTAC 2 cut(s) 278, 593
AfiI CCNNNNNNNGG 3 cut(s) 977, 1231, 1428
AflIII ACRYGT 4 cut(s) 390, 539, 1036, 1279
AjnI CCWGG 1 cut(s) 370
AleI CACNNNNGTG 1 cut(s) 1207
AluBI AGCT 4 cut(s) 932, 1175, 1320, 1390
AluI AGCT 4 cut(s) 932, 1175, 1320, 1390
Alw21I GWGCWC 1 cut(s) 1059
Alw26I GTCTC 5 cut(s) 206, 620, 884, 1210, 1361
AlwI GGATC 1 cut(s) 146
AoxI GGCC 1 cut(s) 399
ApeKI GCWGC 1 cut(s) 1083
ApoI RAATTY 6 cut(s) 254, 433, 571, 583, 1180, 1417
Asp700I GAANNNNTTC 1 cut(s) 1402
AspA2I CCTAGG 1 cut(s) 457
AspLEI GCGC 1 cut(s) 99
AsuHPI GGTGA 3 cut(s) 44, 273, 943
AsuII TTCGAA 1 cut(s) 117
AsuNHI GCTAGC 1 cut(s) 376
AvrII CCTAGG 1 cut(s) 457
BaeGI GKGCMC 1 cut(s) 560
BanI GGYRCC 1 cut(s) 1435
BbsI GAAGAC 2 cut(s) 846, 1160
Bbv12I GWGCWC 1 cut(s) 1059
BbvCI CCTCAGC 1 cut(s) 1293
BbvI GCAGC 1 cut(s) 1070
BccI CCATC 2 cut(s) 735, 1426
BceAI ACGGC 1 cut(s) 71
BcgI CGANNNNNNTGC 6 cut(s) 890, 924, 983, 1017, 1150, 1184
BciT130I CCWGG 1 cut(s) 372
BcoDI GTCTC 5 cut(s) 206, 620, 884, 1210, 1361
BfaI CTAG 5 cut(s) 306, 377, 458, 876, 1353
BfmI CTRYAG 1 cut(s) 1084
BfuAI ACCTGC 1 cut(s) 1068
BglII AGATCT 3 cut(s) 121, 349, 362
BisI GCNGC 2 cut(s) 1081, 1084
BlnI CCTAGG 1 cut(s) 457
BlpI GCTNAGC 1 cut(s) 912
BlsI GCNGC 2 cut(s) 1082, 1085
Bme1390I CCNGG 1 cut(s) 372
BmiI GGNNCC 1 cut(s) 1437
BmrFI CCNGG 1 cut(s) 372
BmsI GCATC 3 cut(s) 791, 1279, 1372
BmtI GCTAGC 1 cut(s) 380
BpiI GAAGAC 2 cut(s) 846, 1160
Bpu10I CCTNAGC 1 cut(s) 1293
Bpu1102I GCTNAGC 1 cut(s) 912
Bpu14I TTCGAA 1 cut(s) 117
BpuEI CTTGAG 2 cut(s) 1343, 1376
BsaAI YACGTR 1 cut(s) 247
BsaI GGTCTC 1 cut(s) 206
BsaJI CCNNGG 6 cut(s) 371, 396, 457, 784, 888, 954
Bsc4I CCNNNNNNNGG 3 cut(s) 977, 1231, 1428
Bse3DI GCAATG 1 cut(s) 913
BseBI CCWGG 1 cut(s) 372
BseDI CCNNGG 6 cut(s) 371, 396, 457, 784, 888, 954
BseGI GGATG 2 cut(s) 172, 1437
BseLI CCNNNNNNNGG 3 cut(s) 977, 1231, 1428
BseMI GCAATG 1 cut(s) 913
BseMII CTCAG 6 cut(s) 44, 367, 841, 926, 1044, 1284
BseSI GKGCMC 1 cut(s) 560
BseXI GCAGC 1 cut(s) 1070
BsgI GTGCAG 1 cut(s) 1464
BshFI GGCC 1 cut(s) 401
BshNI GGYRCC 1 cut(s) 1435
BsiHKAI GWGCWC 1 cut(s) 1059
BslI CCNNNNNNNGG 3 cut(s) 977, 1231, 1428
BsmAI GTCTC 5 cut(s) 206, 620, 884, 1210, 1361
BsnI GGCC 1 cut(s) 401
Bso31I GGTCTC 1 cut(s) 206
Bsp119I TTCGAA 1 cut(s) 117
Bsp1286I GDGCHC 2 cut(s) 560, 1059
Bsp143I GATC 4 cut(s) 121, 151, 349, 362
Bsp1720I GCTNAGC 1 cut(s) 912
Bsp19I CCATGG 1 cut(s) 784
BspACI CCGC 6 cut(s) 9, 229, 971, 1080, 1212, 1414
BspANI GGCC 1 cut(s) 401
BspCNI CTCAG 6 cut(s) 43, 366, 840, 925, 1045, 1285
BspHI TCATGA 1 cut(s) 601
BspLI GGNNCC 1 cut(s) 1437
BspMAI CTGCAG 1 cut(s) 1088
BspMI ACCTGC 1 cut(s) 1068
BspOI GCTAGC 1 cut(s) 380
BspPI GGATC 1 cut(s) 146
BspT104I TTCGAA 1 cut(s) 117
BspT107I GGYRCC 1 cut(s) 1435
BspTNI GGTCTC 1 cut(s) 206
BsrDI GCAATG 1 cut(s) 913
BssECI CCNNGG 6 cut(s) 371, 396, 457, 784, 888, 954
BssMI GATC 4 cut(s) 121, 151, 349, 362
BssT1I CCWWGG 4 cut(s) 457, 784, 888, 954
Bst2UI CCWGG 1 cut(s) 372
Bst4CI ACNGT 3 cut(s) 760, 1347, 1379
Bst6I CTCTTC 3 cut(s) 138, 636, 1393
BstAPI GCANNNNNTGC 1 cut(s) 1442
BstBAI YACGTR 1 cut(s) 247
BstBI TTCGAA 1 cut(s) 117
BstC8I GCNNGC 2 cut(s) 378, 1173
BstDEI CTNAG 8 cut(s) 30, 353, 359, 827, 912, 1053, 1124, 1293
BstDSI CCRYGG 1 cut(s) 784
BstF5I GGATG 2 cut(s) 172, 1437
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 4 cut(s) 124, 154, 352, 365
BstMAI GTCTC 5 cut(s) 206, 620, 884, 1210, 1361
BstMBI GATC 4 cut(s) 121, 151, 349, 362
BstMWI GCNNNNNNNGC 1 cut(s) 1442
BstNI CCWGG 1 cut(s) 372
BstNSI RCATGY 4 cut(s) 271, 394, 1040, 1283
BstSCI CCNGG 1 cut(s) 370
BstSFI CTRYAG 1 cut(s) 1084
BstSLI GKGCMC 1 cut(s) 560
BstV1I GCAGC 1 cut(s) 1070
BstV2I GAAGAC 2 cut(s) 846, 1160
BstX2I RGATCY 3 cut(s) 121, 349, 362
BstYI RGATCY 3 cut(s) 121, 349, 362
BsuRI GGCC 1 cut(s) 401
BtgI CCRYGG 1 cut(s) 784
BtsCI GGATG 2 cut(s) 172, 1437
BveI ACCTGC 1 cut(s) 1068
Cac8I GCNNGC 2 cut(s) 378, 1173
CciI TCATGA 1 cut(s) 601
CfoI GCGC 1 cut(s) 99
Csp6I GTAC 2 cut(s) 277, 592
CviQI GTAC 2 cut(s) 277, 592
DdeI CTNAG 8 cut(s) 30, 353, 359, 827, 912, 1053, 1124, 1293
DpnI GATC 4 cut(s) 123, 153, 351, 364
DpnII GATC 4 cut(s) 121, 151, 349, 362
DraI TTTAAA 1 cut(s) 738
DraIII CACNNNGTG 1 cut(s) 1442
Eam1104I CTCTTC 3 cut(s) 138, 636, 1393
EarI CTCTTC 3 cut(s) 138, 636, 1393
Eco130I CCWWGG 4 cut(s) 457, 784, 888, 954
Eco31I GGTCTC 1 cut(s) 206
Eco32I GATATC 1 cut(s) 311
Eco57I CTGAAG 1 cut(s) 1306
EcoRI GAATTC 1 cut(s) 1417
EcoRII CCWGG 1 cut(s) 370
EcoRV GATATC 1 cut(s) 311
EcoT14I CCWWGG 4 cut(s) 457, 784, 888, 954
ErhI CCWWGG 4 cut(s) 457, 784, 888, 954
FalI AAGNNNNNCTT 4 cut(s) 599, 631, 1321, 1353
FauI CCCGC 3 cut(s) 236, 978, 1205
FblI GTMKAC 2 cut(s) 1236, 1374
Fnu4HI GCNGC 2 cut(s) 1081, 1084
FokI GGATG 2 cut(s) 179, 1444
Fsp4HI GCNGC 2 cut(s) 1081, 1084
FspBI CTAG 5 cut(s) 306, 377, 458, 876, 1353
GlaI GCGC 1 cut(s) 98
GluI GCNGC 2 cut(s) 1081, 1084
HaeIII GGCC 1 cut(s) 401
HhaI GCGC 1 cut(s) 99
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HindIII AAGCTT 1 cut(s) 1318
HphI GGTGA 3 cut(s) 44, 273, 943
Hpy166II GTNNAC 6 cut(s) 520, 763, 1042, 1237, 1343, 1375
Hpy188I TCNGA 7 cut(s) 65, 211, 964, 985, 1054, 1325, 1408
Hpy188III TCNNGA 8 cut(s) 140, 306, 328, 407, 602, 798, 941, 1313
Hpy8I GTNNAC 6 cut(s) 520, 763, 1042, 1237, 1343, 1375
Hpy99I CGWCG 1 cut(s) 852
HpyAV CCTTC 2 cut(s) 80, 511
HpyCH4III ACNGT 3 cut(s) 760, 1347, 1379
HpyCH4IV ACGT 3 cut(s) 246, 336, 541
HpyCH4V TGCA 8 cut(s) 777, 906, 1015, 1023, 1063, 1086, 1171, 1445
HpyF10VI GCNNNNNNNGC 1 cut(s) 1442
HpyF3I CTNAG 8 cut(s) 30, 353, 359, 827, 912, 1053, 1124, 1293
HpySE526I ACGT 3 cut(s) 246, 336, 541
HspAI GCGC 1 cut(s) 97
Kzo9I GATC 4 cut(s) 121, 151, 349, 362
LmnI GCTCC 1 cut(s) 1180
Lsp1109I GCAGC 1 cut(s) 1070
LweI GCATC 3 cut(s) 791, 1279, 1372
MaeI CTAG 5 cut(s) 306, 377, 458, 876, 1353
MaeII ACGT 3 cut(s) 246, 336, 541
MaeIII GTNAC 5 cut(s) 33, 822, 895, 1256, 1333
MalI GATC 4 cut(s) 123, 153, 351, 364
MboI GATC 4 cut(s) 121, 151, 349, 362
MboII GAAGA 6 cut(s) 131, 155, 623, 846, 1165, 1410
MfeI CAATTG 1 cut(s) 1107
MflI RGATCY 3 cut(s) 121, 349, 362
MhlI GDGCHC 2 cut(s) 560, 1059
MlyI GAGTC 4 cut(s) 60, 284, 515, 622
MmeI TCCRAC 1 cut(s) 88
MroXI GAANNNNTTC 1 cut(s) 1402
MseI TTAA 5 cut(s) 737, 791, 921, 1245, 1452
MslI CAYNNNNRTG 3 cut(s) 1062, 1207, 1284
MspR9I CCNGG 1 cut(s) 372
MunI CAATTG 1 cut(s) 1107
MvaI CCWGG 1 cut(s) 372
MwoI GCNNNNNNNGC 1 cut(s) 1442
NcoI CCATGG 1 cut(s) 784
NdeII GATC 4 cut(s) 121, 151, 349, 362
NheI GCTAGC 1 cut(s) 376
NlaIV GGNNCC 1 cut(s) 1437
NmeAIII GCCGAG 1 cut(s) 377
NmuCI GTSAC 3 cut(s) 822, 1256, 1333
NspI RCATGY 4 cut(s) 271, 394, 1040, 1283
NspV TTCGAA 1 cut(s) 117
OliI CACNNNNGTG 1 cut(s) 1207
PagI TCATGA 1 cut(s) 601
PaqCI CACCTGC 1 cut(s) 1068
PciI ACATGT 3 cut(s) 390, 1036, 1279
PcsI WCGNNNNNNNCGW 1 cut(s) 243
PdmI GAANNNNTTC 1 cut(s) 1402
PfeI GAWTC 6 cut(s) 224, 530, 859, 937, 944, 1403
PflMI CCANNNNNTGG 1 cut(s) 1428
PkrI GCNGC 2 cut(s) 1082, 1085
PleI GAGTC 4 cut(s) 60, 284, 515, 622
PpsI GAGTC 4 cut(s) 60, 284, 515, 622
Ppu21I YACGTR 1 cut(s) 247
PscI ACATGT 3 cut(s) 390, 1036, 1279
Psp6I CCWGG 1 cut(s) 370
PspGI CCWGG 1 cut(s) 370
PspN4I GGNNCC 1 cut(s) 1437
PstI CTGCAG 1 cut(s) 1088
PsuI RGATCY 3 cut(s) 121, 349, 362
RsaI GTAC 2 cut(s) 278, 593
RsaNI GTAC 2 cut(s) 277, 592
RseI CAYNNNNRTG 3 cut(s) 1062, 1207, 1284
SaqAI TTAA 5 cut(s) 737, 791, 921, 1245, 1452
SatI GCNGC 2 cut(s) 1081, 1084
Sau3AI GATC 4 cut(s) 121, 151, 349, 362
SchI GAGTC 4 cut(s) 60, 284, 515, 622
ScrFI CCNGG 1 cut(s) 372
SduI GDGCHC 2 cut(s) 560, 1059
SfaNI GCATC 3 cut(s) 791, 1279, 1372
SfcI CTRYAG 1 cut(s) 1084
SfuI TTCGAA 1 cut(s) 117
SmiMI CAYNNNNRTG 3 cut(s) 1062, 1207, 1284
SmlI CTYRAG 2 cut(s) 1358, 1391
SmoI CTYRAG 2 cut(s) 1358, 1391
SsiI CCGC 6 cut(s) 9, 229, 971, 1080, 1212, 1414
SspI AATATT 1 cut(s) 1251
SspMI CTAG 5 cut(s) 306, 377, 458, 876, 1353
StyD4I CCNGG 1 cut(s) 370
StyI CCWWGG 4 cut(s) 457, 784, 888, 954
TaaI ACNGT 3 cut(s) 760, 1347, 1379
TaiI ACGT 3 cut(s) 249, 339, 544
TaqI TCGA 5 cut(s) 117, 408, 857, 1003, 1098
TaqII GACCGA 1 cut(s) 840
TauI GCSGC 1 cut(s) 1083
TfiI GAWTC 6 cut(s) 224, 530, 859, 937, 944, 1403
Tru1I TTAA 5 cut(s) 737, 791, 921, 1245, 1452
Tru9I TTAA 5 cut(s) 737, 791, 921, 1245, 1452
TseFI GTSAC 3 cut(s) 822, 1256, 1333
TseI GCWGC 1 cut(s) 1083
Tsp45I GTSAC 3 cut(s) 822, 1256, 1333
TspDTI ATGAA 8 cut(s) 187, 467, 540, 618, 689, 725, 822, 858
Van91I CCANNNNNTGG 1 cut(s) 1428
XapI RAATTY 6 cut(s) 254, 433, 571, 583, 1180, 1417
XbaI TCTAGA 1 cut(s) 305
XceI RCATGY 4 cut(s) 271, 394, 1040, 1283
XcmI CCANNNNNNNNNTGG 1 cut(s) 1429
XmaJI CCTAGG 1 cut(s) 457
XmiI GTMKAC 2 cut(s) 1236, 1374
XmnI GAANNNNTTC 1 cut(s) 1402
XspI CTAG 5 cut(s) 306, 377, 458, 876, 1353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.