Rmu_sc0014962.1_g000001

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014962.1
OG0000428
Physical Location & Seq
Forward (+)
1 .. 913
913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014962.1_g000001.1.cds

Sequence Viewer

Length: 776 bp
tattagatttcgatgagggtgatgagaatgacaacaacctggttcgacataggaagttcgttgacaacattttgaaaaggtatttagaattgtgtaagaaagagaagcagaaacaactgctcgataaattcaggctttgcatgacgaggtacttatctgcagacgctaccgtagtaaataagtggttgcgttattcaatggagagaagtgtgaaggagttggatatcagccttagggttgataaatcctattggctttggggtggactgagaagctactactgcttgtctcgaaaggcacttgccaatgcaaacagtataactactctgaatttggagtacatgagaataaagaacattagcagatttggcagcagtactgctaagcctatacgccttcttccctctttgaaagctatgtcccttaaaaatgtgcactttgatactaatgctctcttgtacttaactggagagtgcccttccatggagtctttgtcactaacttcatgttccttcgcaaatttcgaaatttgtgtttcaaattccagtctcagatcctttggtgttaagcagtgtaaggctggtgaaattcgagtttacgaagcagtgaatcttgaatcacttactgttgtttcttcgagttttgagctcgagaggttatctgaagtccgaattttctttgaaagctccgaagctgtggtcggcctccatcctactatgggacaattgggacggagagtttctgaatttcgacggaccatggaaacatcttcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

257

Amino Acids

29.53

Weight (kDa)

9.12

Isoelectric Point (pI)

48.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 548
AcsI RAATTY 8 cut(s) 127, 330, 519, 527, 540, 587, 671, 745
AcuI CTGAAG 1 cut(s) 683
AfaI GTAC 4 cut(s) 151, 340, 378, 460
AfiI CCNNNNNNNGG 2 cut(s) 483, 718
AgsI TTSAA 6 cut(s) 75, 197, 411, 539, 616, 682
AjnI CCWGG 1 cut(s) 38
AluBI AGCT 5 cut(s) 275, 415, 648, 686, 694
AluI AGCT 5 cut(s) 275, 415, 648, 686, 694
Alw21I GWGCWC 2 cut(s) 437, 650
Alw26I GTCTC 2 cut(s) 293, 553
Alw44I GTGCAC 1 cut(s) 433
AlwI GGATC 1 cut(s) 548
Ama87I CYCGRG 1 cut(s) 649
AoxI GGCC 1 cut(s) 702
ApaLI GTGCAC 1 cut(s) 433
ApeKI GCWGC 1 cut(s) 371
ApoI RAATTY 8 cut(s) 127, 330, 519, 527, 540, 587, 671, 745
ArsI GACNNNNNNTTYG 2 cut(s) 683, 715
AspS9I GGNCC 1 cut(s) 755
AsuHPI GGTGA 2 cut(s) 31, 595
AsuII TTCGAA 1 cut(s) 524
AvaI CYCGRG 1 cut(s) 649
AvaII GGWCC 1 cut(s) 755
AxyI CCTNAGG 1 cut(s) 232
BaeGI GKGCMC 2 cut(s) 437, 478
BanII GRGCYC 1 cut(s) 650
Bbv12I GWGCWC 2 cut(s) 437, 650
BbvI GCAGC 1 cut(s) 383
BccI CCATC 1 cut(s) 716
BciT130I CCWGG 1 cut(s) 40
BcoDI GTCTC 2 cut(s) 293, 553
BfaI CTAG 1 cut(s) 774
BfmI CTRYAG 1 cut(s) 158
BisI GCNGC 1 cut(s) 372
BlpI GCTNAGC 1 cut(s) 383
BlsI GCNGC 1 cut(s) 373
BmcAI AGTACT 1 cut(s) 378
Bme1390I CCNGG 1 cut(s) 40
Bme18I GGWCC 1 cut(s) 755
BmeT110I CYCGRG 1 cut(s) 649
BmgT120I GGNCC 1 cut(s) 755
BmrFI CCNGG 1 cut(s) 40
BpmI CTGGAG 1 cut(s) 488
Bpu1102I GCTNAGC 1 cut(s) 383
Bpu14I TTCGAA 1 cut(s) 524
BsaJI CCNNGG 2 cut(s) 482, 758
BsaXI ACNNNNNCTCC 2 cut(s) 478, 508
Bsc4I CCNNNNNNNGG 2 cut(s) 483, 718
Bse1I ACTGG 2 cut(s) 471, 545
Bse21I CCTNAGG 1 cut(s) 232
BseBI CCWGG 1 cut(s) 40
BseDI CCNNGG 2 cut(s) 482, 758
BseGI GGATG 1 cut(s) 708
BseLI CCNNNNNNNGG 2 cut(s) 483, 718
BseMII CTCAG 2 cut(s) 259, 564
BseNI ACTGG 2 cut(s) 471, 545
BseSI GKGCMC 2 cut(s) 437, 478
BseXI GCAGC 1 cut(s) 383
BshFI GGCC 1 cut(s) 704
BsiHKAI GWGCWC 2 cut(s) 437, 650
BsiHKCI CYCGRG 1 cut(s) 649
BslFI GGGAC 3 cut(s) 405, 734, 743
BslI CCNNNNNNNGG 2 cut(s) 483, 718
BsmAI GTCTC 2 cut(s) 293, 553
BsmFI GGGAC 3 cut(s) 405, 734, 743
BsnI GGCC 1 cut(s) 704
BsoBI CYCGRG 1 cut(s) 649
Bsp119I TTCGAA 1 cut(s) 524
Bsp1286I GDGCHC 3 cut(s) 437, 478, 650
Bsp143I GATC 1 cut(s) 553
Bsp1720I GCTNAGC 1 cut(s) 383
Bsp19I CCATGG 2 cut(s) 482, 758
BspANI GGCC 1 cut(s) 704
BspCNI CTCAG 2 cut(s) 260, 563
BspMAI CTGCAG 1 cut(s) 162
BspPI GGATC 1 cut(s) 548
BspT104I TTCGAA 1 cut(s) 524
BsrI ACTGG 2 cut(s) 471, 545
BssECI CCNNGG 2 cut(s) 482, 758
BssMI GATC 1 cut(s) 553
BssT1I CCWWGG 2 cut(s) 482, 758
Bst2UI CCWGG 1 cut(s) 40
Bst4CI ACNGT 3 cut(s) 171, 316, 627
BstBI TTCGAA 1 cut(s) 524
BstDEI CTNAG 4 cut(s) 232, 268, 383, 550
BstDSI CCRYGG 2 cut(s) 482, 758
BstF5I GGATG 1 cut(s) 708
BstKTI GATC 1 cut(s) 556
BstMAI GTCTC 2 cut(s) 293, 553
BstMBI GATC 1 cut(s) 553
BstMWI GCNNNNNNNGC 2 cut(s) 281, 368
BstNI CCWGG 1 cut(s) 40
BstSCI CCNGG 1 cut(s) 38
BstSFI CTRYAG 1 cut(s) 158
BstSLI GKGCMC 2 cut(s) 437, 478
BstV1I GCAGC 1 cut(s) 383
BstX2I RGATCY 1 cut(s) 553
BstYI RGATCY 1 cut(s) 553
Bsu36I CCTNAGG 1 cut(s) 232
BsuRI GGCC 1 cut(s) 704
BtgI CCRYGG 2 cut(s) 482, 758
BtsCI GGATG 1 cut(s) 708
BtsI GCAGTG 2 cut(s) 577, 611
BtsIMutI CAGTG 2 cut(s) 577, 611
Cfr13I GGNCC 1 cut(s) 755
CseI GACGC 1 cut(s) 172
CsiI ACCWGGT 1 cut(s) 38
Csp6I GTAC 4 cut(s) 150, 339, 377, 459
CviAII CATG 5 cut(s) 141, 342, 483, 506, 759
CviQI GTAC 4 cut(s) 150, 339, 377, 459
DdeI CTNAG 4 cut(s) 232, 268, 383, 550
DpnI GATC 1 cut(s) 555
DpnII GATC 1 cut(s) 553
Ecl136II GAGCTC 1 cut(s) 648
Eco130I CCWWGG 2 cut(s) 482, 758
Eco24I GRGCYC 1 cut(s) 650
Eco32I GATATC 1 cut(s) 225
Eco47I GGWCC 1 cut(s) 755
Eco53kI GAGCTC 1 cut(s) 648
Eco57I CTGAAG 1 cut(s) 683
Eco81I CCTNAGG 1 cut(s) 232
Eco88I CYCGRG 1 cut(s) 649
EcoICRI GAGCTC 1 cut(s) 648
EcoRII CCWGG 1 cut(s) 38
EcoRV GATATC 1 cut(s) 225
EcoT14I CCWWGG 2 cut(s) 482, 758
EcoT38I GRGCYC 1 cut(s) 650
ErhI CCWWGG 2 cut(s) 482, 758
FaeI CATG 5 cut(s) 144, 345, 486, 509, 762
FaqI GGGAC 3 cut(s) 405, 734, 743
FatI CATG 5 cut(s) 140, 341, 482, 505, 758
Fnu4HI GCNGC 1 cut(s) 372
FokI GGATG 1 cut(s) 695
FriOI GRGCYC 1 cut(s) 650
Fsp4HI GCNGC 1 cut(s) 372
FspBI CTAG 1 cut(s) 774
GluI GCNGC 1 cut(s) 372
GsuI CTGGAG 1 cut(s) 488
HaeIII GGCC 1 cut(s) 704
HgaI GACGC 1 cut(s) 172
Hin1II CATG 5 cut(s) 144, 345, 486, 509, 762
HincII GTYRAC 1 cut(s) 63
HindII GTYRAC 1 cut(s) 63
HinfI GANTC 3 cut(s) 487, 609, 616
HphI GGTGA 2 cut(s) 31, 595
Hpy166II GTNNAC 4 cut(s) 63, 265, 435, 597
Hpy188I TCNGA 6 cut(s) 329, 553, 663, 670, 690, 744
Hpy188III TCNNGA 3 cut(s) 290, 613, 651
Hpy8I GTNNAC 4 cut(s) 63, 265, 435, 597
Hpy99I CGWCG 1 cut(s) 755
HpyAV CCTTC 4 cut(s) 207, 406, 488, 522
HpyCH4III ACNGT 3 cut(s) 171, 316, 627
HpyCH4V TGCA 4 cut(s) 140, 160, 310, 435
HpyF10VI GCNNNNNNNGC 2 cut(s) 281, 368
HpyF3I CTNAG 4 cut(s) 232, 268, 383, 550
Hsp92II CATG 5 cut(s) 144, 345, 486, 509, 762
Kzo9I GATC 1 cut(s) 553
LmnI GCTCC 1 cut(s) 691
LpnPI CCDG 6 cut(s) 25, 52, 117, 452, 558, 566
Lsp1109I GCAGC 1 cut(s) 383
MabI ACCWGGT 1 cut(s) 38
MaeI CTAG 1 cut(s) 774
MaeIII GTNAC 1 cut(s) 494
MalI GATC 1 cut(s) 555
MboI GATC 1 cut(s) 553
MboII GAAGA 3 cut(s) 391, 626, 761
MfeI CAATTG 1 cut(s) 724
MflI RGATCY 1 cut(s) 553
MhlI GDGCHC 3 cut(s) 437, 478, 650
MlyI GAGTC 1 cut(s) 496
MmeI TCCRAC 1 cut(s) 200
MnlI CCTC 5 cut(s) 9, 140, 414, 647, 715
MseI TTAA 3 cut(s) 425, 463, 566
MspR9I CCNGG 1 cut(s) 40
MunI CAATTG 1 cut(s) 724
MvaI CCWGG 1 cut(s) 40
MwoI GCNNNNNNNGC 2 cut(s) 281, 368
NcoI CCATGG 2 cut(s) 482, 758
NdeII GATC 1 cut(s) 553
NlaIII CATG 5 cut(s) 144, 345, 486, 509, 762
NmuCI GTSAC 1 cut(s) 494
NspV TTCGAA 1 cut(s) 524
PaeR7I CTCGAG 1 cut(s) 649
PcsI WCGNNNNNNNCGW 1 cut(s) 521
PfeI GAWTC 2 cut(s) 609, 616
PkrI GCNGC 1 cut(s) 373
PleI GAGTC 1 cut(s) 495
PpsI GAGTC 1 cut(s) 495
Psp124BI GAGCTC 1 cut(s) 650
Psp6I CCWGG 1 cut(s) 38
PspGI CCWGG 1 cut(s) 38
PspPI GGNCC 1 cut(s) 755
PstI CTGCAG 1 cut(s) 162
PsuI RGATCY 1 cut(s) 553
RsaI GTAC 4 cut(s) 151, 340, 378, 460
RsaNI GTAC 4 cut(s) 150, 339, 377, 459
SacI GAGCTC 1 cut(s) 650
SaqAI TTAA 3 cut(s) 425, 463, 566
SatI GCNGC 1 cut(s) 372
Sau3AI GATC 1 cut(s) 553
Sau96I GGNCC 1 cut(s) 755
ScaI AGTACT 1 cut(s) 378
SchI GAGTC 1 cut(s) 496
ScrFI CCNGG 1 cut(s) 40
SduI GDGCHC 3 cut(s) 437, 478, 650
SetI ASST 9 cut(s) 41, 82, 151, 277, 417, 650, 658, 688, 696
SexAI ACCWGGT 1 cut(s) 38
SfcI CTRYAG 1 cut(s) 158
Sfr274I CTCGAG 1 cut(s) 649
SfuI TTCGAA 1 cut(s) 524
SinI GGWCC 1 cut(s) 755
SlaI CTCGAG 1 cut(s) 649
SmlI CTYRAG 1 cut(s) 649
SmoI CTYRAG 1 cut(s) 649
SspMI CTAG 1 cut(s) 774
SstI GAGCTC 1 cut(s) 650
StyD4I CCNGG 1 cut(s) 38
StyI CCWWGG 2 cut(s) 482, 758
TaaI ACNGT 3 cut(s) 171, 316, 627
TaqI TCGA 9 cut(s) 11, 45, 122, 291, 524, 591, 637, 650, 750
TatI WGTACW 3 cut(s) 338, 376, 458
TfiI GAWTC 2 cut(s) 609, 616
Tru1I TTAA 3 cut(s) 425, 463, 566
Tru9I TTAA 3 cut(s) 425, 463, 566
TscAI CASTG 2 cut(s) 577, 611
TseFI GTSAC 1 cut(s) 494
TseI GCWGC 1 cut(s) 371
Tsp45I GTSAC 1 cut(s) 494
TspDTI ATGAA 1 cut(s) 494
TspGWI ACGGA 2 cut(s) 747, 768
TspRI CASTG 2 cut(s) 577, 611
VneI GTGCAC 1 cut(s) 433
VpaK11BI GGWCC 1 cut(s) 755
XapI RAATTY 8 cut(s) 127, 330, 519, 527, 540, 587, 671, 745
XhoI CTCGAG 1 cut(s) 649
XspI CTAG 1 cut(s) 774
ZrmI AGTACT 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.