RchiOBHm_Chr6g0265451

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000428
Physical Location & Seq
Reverse (-)
21326231 .. 21329085
2855 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23806

Sequence Viewer

Length: 1263 bp
ATGGCTGATAGCACATTACCACCTGACTTACCTGACCTTGTTATGCATCAAATCATCCTTCTACTTCCCACTAAACCTGCCATTCGCATGAGTTCTCTTTCCAAGCAATATGAAGGTATATGGTCTGCACTCCGAGTGTTAGATTTTAAAGAGGGGGAGCTGCCACATGATGATGATGATGCCAACGACAAACATGCAAAATTTATCAACATCTTGGCCAGGTACTTGGCATTCCGTAAGAAAGACGAGCAGCAACCACTCTTAGATAAATTGACTCTTCACATGAGGTACTTATTTGGAGATGAAGATGCTATCATACGTAAGGTGTTGAGTAATTCACTTGAGAGACATGTCAAGGAATTGGACATAAGCCTCAGAAGTAAACATCAGGAGCTTGAATGCTGCTATTGCTTATCCTGCATGGTGCTCATGAATGCAAAAAATTTGACTACTCTGAATTTGGAATATCTGAGGATTAAGGAAATTGACAGTGCTGAGACTGAGCCTTTGTGTCCCTCTTTGAAAACTTTGTCCCTCAAGACCGTGCATTTTGATGACAAGGCTCTCTTCTACTTAGTTTTGGGGTGCCCTGCTGTGGAGTACTTGTCATTAACATCATGTTCCTTTGACACCCCGGTGCTCCATGTTTCAAGTTCCAGTCTCAGATCCTTAGAAGTCAAGAATTGTGATGCTGAGCAGATTGAAGTTGATAAAGCTACAAATCTTGAGTCTTTTACATTTGTTTCAAAGTTTCCTCTCCTTCAGAGTATAACCTTAAATGATACTATCAACTTGAATTATATCAAAATCCGTGCTCAGTACCTGACCTACTTTGGATTATTTGGATGCCAAGATCATTTGAATGCTACAGTTAATACTCCAAGTTTACATCACCTTGATATCCATGCTCATCTGACAGCCAAAGTTTCTGTCAATGCTCCAAACTTATGGTTGGCCAGCATCACACTTGAGGAAGAAGAATTTTCCAACTCTAACTGGTCCTGGAAACATTTTGCTACTTTCTGTGACTTTCTTAAAGCATTCTGCTCCAAAAATATAATCCTTGTTATGCGCGACTTTAAGGCTATCATCTTTCCTGACAATTTCAAATCAGCGTGCTATCCACCATTGCCCAGTACCAATCGTCTTGACCTCATAATGTCTAACCCTCCGACAGAGGAGTCTGATATTTCTGACCTGGAGGAGTCCTTGCTTTGGATGGCTCCTAATGCAGAGGAGATGGTATTTGCACAGTTAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box LRR_2

Protein Analysis

420

Amino Acids

47.89

Weight (kDa)

5.21

Isoelectric Point (pI)

48.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 104 - 265 1e-08 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 110 - 248 7.5e-15 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1180
Acc36I ACCTGC 1 cut(s) 85
AccB1I GGYRCC 1 cut(s) 585
AccII CGCG 1 cut(s) 1074
AclWI GGATC 1 cut(s) 660
AcoI YGGCCR 2 cut(s) 216, 954
AcsI RAATTY 4 cut(s) 200, 442, 457, 980
AcuI CTGAAG 1 cut(s) 746
AfaI GTAC 5 cut(s) 224, 290, 602, 821, 1138
AfiI CCNNNNNNNGG 2 cut(s) 595, 1215
AflIII ACRYGT 1 cut(s) 349
AgsI TTSAA 8 cut(s) 398, 523, 651, 704, 747, 796, 862, 1108
AjnI CCWGG 3 cut(s) 218, 1001, 1197
AleI CACNNNNGTG 1 cut(s) 635
AluBI AGCT 3 cut(s) 160, 394, 716
AluI AGCT 3 cut(s) 160, 394, 716
Alw21I GWGCWC 3 cut(s) 429, 642, 817
Alw26I GTCTC 3 cut(s) 340, 491, 665
AlwI GGATC 1 cut(s) 660
AlwNI CAGNNNCTG 1 cut(s) 823
AoxI GGCC 2 cut(s) 216, 954
ApeKI GCWGC 3 cut(s) 160, 250, 402
ApoI RAATTY 4 cut(s) 200, 442, 457, 980
ArsI GACNNNNNNTTYG 6 cut(s) 490, 522, 713, 745, 915, 947
AspLEI GCGC 1 cut(s) 1074
AspS9I GGNCC 1 cut(s) 999
AsuC2I CCSGG 1 cut(s) 635
AsuHPI GGTGA 1 cut(s) 884
AvaII GGWCC 1 cut(s) 999
BaeGI GKGCMC 1 cut(s) 590
BalI TGGCCA 2 cut(s) 218, 956
BanI GGYRCC 1 cut(s) 585
Bbv12I GWGCWC 3 cut(s) 429, 642, 817
BbvI GCAGC 3 cut(s) 147, 262, 389
BccI CCATC 2 cut(s) 1213, 1234
BcgI CGANNNNNNTGC 2 cut(s) 176, 210
BciT130I CCWGG 3 cut(s) 220, 1003, 1199
BcnI CCSGG 1 cut(s) 635
BcoDI GTCTC 3 cut(s) 340, 491, 665
BfmI CTRYAG 1 cut(s) 867
BfuAI ACCTGC 1 cut(s) 85
BisI GCNGC 3 cut(s) 161, 251, 403
BlpI GCTNAGC 1 cut(s) 693
BlsI GCNGC 3 cut(s) 162, 252, 404
BmcAI AGTACT 1 cut(s) 602
Bme1390I CCNGG 4 cut(s) 220, 635, 1003, 1199
Bme18I GGWCC 1 cut(s) 999
BmgT120I GGNCC 1 cut(s) 999
BmiI GGNNCC 2 cut(s) 587, 1224
BmrFI CCNGG 4 cut(s) 220, 635, 1003, 1199
BmrI ACTGGG 1 cut(s) 1128
BmsI GCATC 6 cut(s) 55, 169, 298, 679, 836, 969
BmuI ACTGGG 1 cut(s) 1128
BpmI CTGGAG 1 cut(s) 1220
Bpu1102I GCTNAGC 1 cut(s) 693
BpuEI CTTGAG 4 cut(s) 362, 521, 746, 989
BpuMI CCSGG 1 cut(s) 635
BsaAI YACGTR 1 cut(s) 320
BsaJI CCNNGG 1 cut(s) 633
BsaXI ACNNNNNCTCC 2 cut(s) 590, 620
Bsc4I CCNNNNNNNGG 2 cut(s) 595, 1215
Bse1I ACTGG 3 cut(s) 657, 1001, 1134
Bse3DI GCAATG 1 cut(s) 1127
BseBI CCWGG 3 cut(s) 220, 1003, 1199
BseDI CCNNGG 1 cut(s) 633
BseGI GGATG 3 cut(s) 54, 851, 1224
BseLI CCNNNNNNNGG 2 cut(s) 595, 1215
BseMI GCAATG 1 cut(s) 1127
BseMII CTCAG 7 cut(s) 388, 461, 486, 492, 676, 684, 830
BseNI ACTGG 3 cut(s) 657, 1001, 1134
BseRI GAGGAG 3 cut(s) 1193, 1217, 1250
BseSI GKGCMC 1 cut(s) 590
BseXI GCAGC 3 cut(s) 147, 262, 389
BsgI GTGCAG 1 cut(s) 111
Bsh1236I CGCG 1 cut(s) 1074
BshFI GGCC 2 cut(s) 218, 956
BshNI GGYRCC 1 cut(s) 585
BsiHKAI GWGCWC 3 cut(s) 429, 642, 817
BsiSI CCGG 1 cut(s) 635
BslFI GGGAC 2 cut(s) 498, 517
BslI CCNNNNNNNGG 2 cut(s) 595, 1215
BsmAI GTCTC 3 cut(s) 340, 491, 665
BsmFI GGGAC 2 cut(s) 498, 517
BsmI GAATGC 5 cut(s) 230, 404, 439, 868, 1040
BsnI GGCC 2 cut(s) 218, 956
Bsp1286I GDGCHC 4 cut(s) 429, 590, 642, 817
Bsp143I GATC 2 cut(s) 665, 853
Bsp1720I GCTNAGC 1 cut(s) 693
BspANI GGCC 2 cut(s) 218, 956
BspCNI CTCAG 7 cut(s) 387, 462, 487, 493, 675, 685, 829
BspFNI CGCG 1 cut(s) 1074
BspHI TCATGA 1 cut(s) 429
BspLI GGNNCC 2 cut(s) 587, 1224
BspMI ACCTGC 1 cut(s) 85
BspPI GGATC 1 cut(s) 660
BspT107I GGYRCC 1 cut(s) 585
BsrDI GCAATG 1 cut(s) 1127
BsrI ACTGG 3 cut(s) 657, 1001, 1134
BssECI CCNNGG 1 cut(s) 633
BssMI GATC 2 cut(s) 665, 853
Bst2UI CCWGG 3 cut(s) 220, 1003, 1199
Bst4CI ACNGT 4 cut(s) 491, 544, 871, 1254
Bst6I CTCTTC 2 cut(s) 282, 572
BstBAI YACGTR 1 cut(s) 320
BstC8I GCNNGC 2 cut(s) 958, 1117
BstF5I GGATG 3 cut(s) 54, 851, 1224
BstFNI CGCG 1 cut(s) 1074
BstHHI GCGC 1 cut(s) 1074
BstKTI GATC 2 cut(s) 668, 856
BstMAI GTCTC 3 cut(s) 340, 491, 665
BstMBI GATC 2 cut(s) 665, 853
BstMWI GCNNNNNNNGC 3 cut(s) 408, 417, 1229
BstNI CCWGG 3 cut(s) 220, 1003, 1199
BstNSI RCATGY 2 cut(s) 197, 353
BstSCI CCNGG 4 cut(s) 218, 633, 1001, 1197
BstSFI CTRYAG 1 cut(s) 867
BstSLI GKGCMC 1 cut(s) 590
BstSNI TACGTA 1 cut(s) 320
BstUI CGCG 1 cut(s) 1074
BstV1I GCAGC 3 cut(s) 147, 262, 389
BstX2I RGATCY 1 cut(s) 665
BstXI CCANNNNNNTGG 2 cut(s) 226, 948
BstYI RGATCY 1 cut(s) 665
BsuRI GGCC 2 cut(s) 218, 956
BtsCI GGATG 3 cut(s) 54, 851, 1224
BtsIMutI CAGTG 1 cut(s) 496
BveI ACCTGC 1 cut(s) 85
Cac8I GCNNGC 2 cut(s) 958, 1117
CaiI CAGNNNCTG 1 cut(s) 823
CciI TCATGA 1 cut(s) 429
CfoI GCGC 1 cut(s) 1074
Cfr13I GGNCC 1 cut(s) 999
Csp6I GTAC 5 cut(s) 223, 289, 601, 820, 1137
CviQI GTAC 5 cut(s) 223, 289, 601, 820, 1137
DpnI GATC 2 cut(s) 667, 855
DpnII GATC 2 cut(s) 665, 853
DraI TTTAAA 1 cut(s) 148
DrdI GACNNNNNNGTC 1 cut(s) 1180
DseDI GACNNNNNNGTC 1 cut(s) 1180
EaeI YGGCCR 2 cut(s) 216, 954
Eam1104I CTCTTC 2 cut(s) 282, 572
EarI CTCTTC 2 cut(s) 282, 572
Eco105I TACGTA 1 cut(s) 320
Eco32I GATATC 1 cut(s) 901
Eco47I GGWCC 1 cut(s) 999
Eco57I CTGAAG 1 cut(s) 746
EcoRII CCWGG 3 cut(s) 218, 1001, 1197
EcoRV GATATC 1 cut(s) 901
EcoT22I ATGCAT 1 cut(s) 48
FalI AAGNNNNNCTT 2 cut(s) 551, 583
FaqI GGGAC 2 cut(s) 498, 517
Fnu4HI GCNGC 3 cut(s) 161, 251, 403
FokI GGATG 3 cut(s) 41, 858, 1231
Fsp4HI GCNGC 3 cut(s) 161, 251, 403
GlaI GCGC 1 cut(s) 1073
GluI GCNGC 3 cut(s) 161, 251, 403
GsuI CTGGAG 1 cut(s) 1220
HaeIII GGCC 2 cut(s) 218, 956
HapII CCGG 1 cut(s) 635
HhaI GCGC 1 cut(s) 1074
Hin6I GCGC 1 cut(s) 1072
HinP1I GCGC 1 cut(s) 1072
HinfI GANTC 4 cut(s) 274, 728, 1181, 1205
HpaII CCGG 1 cut(s) 635
HphI GGTGA 1 cut(s) 884
Hpy166II GTNNAC 2 cut(s) 383, 887
Hpy188III TCNNGA 7 cut(s) 389, 430, 538, 679, 725, 1097, 1148
Hpy8I GTNNAC 2 cut(s) 383, 887
HpyAV CCTTC 3 cut(s) 68, 107, 770
HpyCH4III ACNGT 4 cut(s) 491, 544, 871, 1254
HpyCH4IV ACGT 1 cut(s) 319
HpyCH4V TGCA 8 cut(s) 46, 128, 197, 420, 437, 547, 1232, 1250
HpyF10VI GCNNNNNNNGC 3 cut(s) 408, 417, 1229
HpySE526I ACGT 1 cut(s) 319
HspAI GCGC 1 cut(s) 1072
Kzo9I GATC 2 cut(s) 665, 853
LmnI GCTCC 6 cut(s) 157, 391, 645, 943, 1052, 1228
Lsp1109I GCAGC 3 cut(s) 147, 262, 389
LweI GCATC 6 cut(s) 55, 169, 298, 679, 836, 969
MaeII ACGT 1 cut(s) 319
MaeIII GTNAC 1 cut(s) 1025
MalI GATC 2 cut(s) 667, 855
MboI GATC 2 cut(s) 665, 853
MboII GAAGA 5 cut(s) 269, 317, 559, 986, 989
MflI RGATCY 1 cut(s) 665
MhlI GDGCHC 4 cut(s) 429, 590, 642, 817
MlsI TGGCCA 2 cut(s) 218, 956
MluNI TGGCCA 2 cut(s) 218, 956
MlyI GAGTC 4 cut(s) 268, 737, 1190, 1214
MmeI TCCRAC 2 cut(s) 1011, 1196
Mox20I TGGCCA 2 cut(s) 218, 956
Mph1103I ATGCAT 1 cut(s) 48
MscI TGGCCA 2 cut(s) 218, 956
MseI TTAA 7 cut(s) 147, 477, 611, 776, 873, 1035, 1080
MslI CAYNNNNRTG 5 cut(s) 86, 171, 552, 635, 861
Msp20I TGGCCA 2 cut(s) 218, 956
MspI CCGG 1 cut(s) 635
MspR9I CCNGG 4 cut(s) 220, 635, 1003, 1199
Mva1269I GAATGC 5 cut(s) 230, 404, 439, 868, 1040
MvaI CCWGG 3 cut(s) 220, 1003, 1199
MvnI CGCG 1 cut(s) 1074
MwoI GCNNNNNNNGC 3 cut(s) 408, 417, 1229
NciI CCSGG 1 cut(s) 635
NdeII GATC 2 cut(s) 665, 853
NlaIV GGNNCC 2 cut(s) 587, 1224
NmuCI GTSAC 1 cut(s) 1025
NsiI ATGCAT 1 cut(s) 48
NspI RCATGY 2 cut(s) 197, 353
OliI CACNNNNGTG 1 cut(s) 635
PagI TCATGA 1 cut(s) 429
PciI ACATGT 1 cut(s) 349
PctI GAATGC 5 cut(s) 230, 404, 439, 868, 1040
PfoI TCCNGGA 1 cut(s) 1001
PkrI GCNGC 3 cut(s) 162, 252, 404
PleI GAGTC 4 cut(s) 268, 736, 1189, 1213
PpsI GAGTC 4 cut(s) 268, 736, 1189, 1213
Ppu21I YACGTR 1 cut(s) 320
PscI ACATGT 1 cut(s) 349
Psp6I CCWGG 3 cut(s) 218, 1001, 1197
PspGI CCWGG 3 cut(s) 218, 1001, 1197
PspN4I GGNNCC 2 cut(s) 587, 1224
PspPI GGNCC 1 cut(s) 999
PstNI CAGNNNCTG 1 cut(s) 823
PsuI RGATCY 1 cut(s) 665
RsaI GTAC 5 cut(s) 224, 290, 602, 821, 1138
RsaNI GTAC 5 cut(s) 223, 289, 601, 820, 1137
RseI CAYNNNNRTG 5 cut(s) 86, 171, 552, 635, 861
SaqAI TTAA 7 cut(s) 147, 477, 611, 776, 873, 1035, 1080
SatI GCNGC 3 cut(s) 161, 251, 403
Sau3AI GATC 2 cut(s) 665, 853
Sau96I GGNCC 1 cut(s) 999
ScaI AGTACT 1 cut(s) 602
SchI GAGTC 4 cut(s) 268, 737, 1190, 1214
ScrFI CCNGG 4 cut(s) 220, 635, 1003, 1199
SduI GDGCHC 4 cut(s) 429, 590, 642, 817
SfaNI GCATC 6 cut(s) 55, 169, 298, 679, 836, 969
SfcI CTRYAG 1 cut(s) 867
SinI GGWCC 1 cut(s) 999
SmiMI CAYNNNNRTG 5 cut(s) 86, 171, 552, 635, 861
SmlI CTYRAG 4 cut(s) 341, 536, 725, 968
SmoI CTYRAG 4 cut(s) 341, 536, 725, 968
SnaBI TACGTA 1 cut(s) 320
StyD4I CCNGG 4 cut(s) 218, 633, 1001, 1197
TaaI ACNGT 4 cut(s) 491, 544, 871, 1254
TaiI ACGT 1 cut(s) 322
TatI WGTACW 1 cut(s) 600
Tru1I TTAA 7 cut(s) 147, 477, 611, 776, 873, 1035, 1080
Tru9I TTAA 7 cut(s) 147, 477, 611, 776, 873, 1035, 1080
TscAI CASTG 1 cut(s) 496
TseFI GTSAC 1 cut(s) 1025
TseI GCWGC 3 cut(s) 160, 250, 402
Tsp45I GTSAC 1 cut(s) 1025
TspDTI ATGAA 3 cut(s) 126, 318, 446
TspGWI ACGGA 2 cut(s) 224, 800
TspRI CASTG 1 cut(s) 496
VpaK11BI GGWCC 1 cut(s) 999
XapI RAATTY 4 cut(s) 200, 442, 457, 980
XceI RCATGY 2 cut(s) 197, 353
ZrmI AGTACT 1 cut(s) 602
Zsp2I ATGCAT 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.