Rorug01G0302800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000428
Physical Location & Seq
Reverse (-)
41861208 .. 41861940
733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0302800.1

Sequence Viewer

Length: 627 bp
ATGAATTGGCAGGGCATTGCAGCTACATCTATTCAAGAGTGGTTCTTGGCTGTCGTCCCTCAAGTAGGCAAAGAAGCAATGAATAAGGTGCTGATGCTTTTGTGGGCATTTGGAAGAACAGGAATGCGCAGGTTTGGGAGCAAAAAGGCAAACATGCCTCTGAGACTTATTTGCTTACAGTGGGGTGGTATGAGGACTTCAAGAAAAGTAATGCAAGGCCTCAACAACAAAGCAGGCAGTCCATACGCTGGCAACCATGCACCTACAGAGCGGGTTCTGAAAATGAATTGTGATGGTGCTCTCCTCAAGGCGGGGTGGGACGGCATTGTTCTAGCTCAATCTTTGCAGCATACAGAGGTAATATTTGAAAGTGATTGTGCACTTTTGATTCAGGCTATACAGTCGGTCTCACATGGTTTATCTACTATGAATGTGTTGATTGAAGAAGTTATATATCTTTTAAGGAACCACCCTGGTTTTAGTGTTACCCATGTAAAACGAGAAGCCAACACAGTTGCTCACTTGTTGGCTTCTCATGCTCTTAGAAATAGTGATAGCCAGCTTTGGTTTGTAACAGCTCCCAAATTTATAAGGGATGTCATTCGAAATGATGTAATCGTTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

23.16

Weight (kDa)

9.76

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 100 - 180 5e-14 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 590
Acc16I TGCGCA 1 cut(s) 128
Acc36I ACCTGC 1 cut(s) 120
AccB7I CCANNNNNTGG 1 cut(s) 248
AccBSI CCGCTC 1 cut(s) 271
AciI CCGC 2 cut(s) 271, 311
AcsI RAATTY 1 cut(s) 584
AfiI CCNNNNNNNGG 3 cut(s) 65, 248, 310
AgsI TTSAA 4 cut(s) 35, 201, 368, 443
AjnI CCWGG 1 cut(s) 472
AluBI AGCT 4 cut(s) 23, 335, 562, 578
AluI AGCT 4 cut(s) 23, 335, 562, 578
Alw21I GWGCWC 2 cut(s) 301, 382
Alw26I GTCTC 2 cut(s) 157, 412
Alw44I GTGCAC 1 cut(s) 378
AoxI GGCC 1 cut(s) 217
ApaLI GTGCAC 1 cut(s) 378
ApeKI GCWGC 2 cut(s) 20, 346
ApoI RAATTY 1 cut(s) 584
AspLEI GCGC 1 cut(s) 129
AsuII TTCGAA 1 cut(s) 604
BaeGI GKGCMC 1 cut(s) 382
BarI GAAGNNNNNNTAC 2 cut(s) 181, 213
Bbv12I GWGCWC 2 cut(s) 301, 382
BbvI GCAGC 2 cut(s) 32, 358
BccI CCATC 1 cut(s) 287
BceAI ACGGC 1 cut(s) 337
BciT130I CCWGG 1 cut(s) 474
BcoDI GTCTC 2 cut(s) 157, 412
BfaI CTAG 1 cut(s) 332
BfmI CTRYAG 1 cut(s) 264
BfuAI ACCTGC 1 cut(s) 120
BisI GCNGC 2 cut(s) 21, 347
BlsI GCNGC 2 cut(s) 22, 348
Bme1390I CCNGG 1 cut(s) 474
BmiI GGNNCC 1 cut(s) 467
BmrFI CCNGG 1 cut(s) 474
BmsI GCATC 1 cut(s) 84
Bpu14I TTCGAA 1 cut(s) 604
BpuEI CTTGAG 2 cut(s) 45, 290
BsaI GGTCTC 1 cut(s) 412
BsaJI CCNNGG 1 cut(s) 472
Bsc4I CCNNNNNNNGG 3 cut(s) 65, 248, 310
Bse3DI GCAATG 2 cut(s) 15, 84
BseBI CCWGG 1 cut(s) 474
BseDI CCNNGG 1 cut(s) 472
BseGI GGATG 1 cut(s) 601
BseLI CCNNNNNNNGG 3 cut(s) 65, 248, 310
BseMI GCAATG 2 cut(s) 15, 84
BseMII CTCAG 1 cut(s) 152
BseRI GAGGAG 1 cut(s) 293
BseSI GKGCMC 1 cut(s) 382
BseXI GCAGC 2 cut(s) 32, 358
BshFI GGCC 1 cut(s) 219
BsiHKAI GWGCWC 2 cut(s) 301, 382
BslFI GGGAC 2 cut(s) 41, 332
BslI CCNNNNNNNGG 3 cut(s) 65, 248, 310
BsmAI GTCTC 2 cut(s) 157, 412
BsmFI GGGAC 2 cut(s) 41, 332
BsmI GAATGC 1 cut(s) 129
BsnI GGCC 1 cut(s) 219
Bso31I GGTCTC 1 cut(s) 412
Bsp119I TTCGAA 1 cut(s) 604
Bsp1286I GDGCHC 2 cut(s) 301, 382
BspACI CCGC 2 cut(s) 271, 311
BspANI GGCC 1 cut(s) 219
BspCNI CTCAG 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 467
BspMI ACCTGC 1 cut(s) 120
BspT104I TTCGAA 1 cut(s) 604
BspTNI GGTCTC 1 cut(s) 412
BsrBI CCGCTC 1 cut(s) 271
BsrDI GCAATG 2 cut(s) 15, 84
BssECI CCNNGG 1 cut(s) 472
Bst2UI CCWGG 1 cut(s) 474
Bst4CI ACNGT 3 cut(s) 180, 402, 514
BstBI TTCGAA 1 cut(s) 604
BstC8I GCNNGC 3 cut(s) 235, 250, 560
BstDEI CTNAG 2 cut(s) 161, 542
BstENI CCTNNNNNAGG 1 cut(s) 63
BstF5I GGATG 1 cut(s) 601
BstHHI GCGC 1 cut(s) 129
BstMAI GTCTC 2 cut(s) 157, 412
BstMWI GCNNNNNNNGC 1 cut(s) 536
BstNI CCWGG 1 cut(s) 474
BstNSI RCATGY 1 cut(s) 157
BstSCI CCNGG 1 cut(s) 472
BstSFI CTRYAG 1 cut(s) 264
BstSLI GKGCMC 1 cut(s) 382
BstV1I GCAGC 2 cut(s) 32, 358
BsuRI GGCC 1 cut(s) 219
BtsCI GGATG 1 cut(s) 601
BtsIMutI CAGTG 1 cut(s) 185
BveI ACCTGC 1 cut(s) 120
Cac8I GCNNGC 3 cut(s) 235, 250, 560
CfoI GCGC 1 cut(s) 129
CviAII CATG 5 cut(s) 154, 257, 413, 491, 536
DdeI CTNAG 2 cut(s) 161, 542
Eco147I AGGCCT 1 cut(s) 219
Eco31I GGTCTC 1 cut(s) 412
EcoNI CCTNNNNNAGG 1 cut(s) 63
EcoRII CCWGG 1 cut(s) 472
FaeI CATG 5 cut(s) 157, 260, 416, 494, 539
FaqI GGGAC 2 cut(s) 41, 332
FatI CATG 5 cut(s) 153, 256, 412, 490, 535
FauI CCCGC 2 cut(s) 264, 304
Fnu4HI GCNGC 2 cut(s) 21, 347
FokI GGATG 1 cut(s) 608
Fsp4HI GCNGC 2 cut(s) 21, 347
FspBI CTAG 1 cut(s) 332
FspI TGCGCA 1 cut(s) 128
GlaI GCGC 1 cut(s) 128
GluI GCNGC 2 cut(s) 21, 347
HaeIII GGCC 1 cut(s) 219
HhaI GCGC 1 cut(s) 129
Hin1II CATG 5 cut(s) 157, 260, 416, 494, 539
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HinfI GANTC 1 cut(s) 388
Hpy166II GTNNAC 1 cut(s) 380
Hpy188I TCNGA 3 cut(s) 162, 279, 626
Hpy188III TCNNGA 2 cut(s) 35, 201
Hpy8I GTNNAC 1 cut(s) 380
HpyCH4III ACNGT 3 cut(s) 180, 402, 514
HpyCH4V TGCA 5 cut(s) 20, 214, 260, 346, 380
HpyF10VI GCNNNNNNNGC 1 cut(s) 536
HpyF3I CTNAG 2 cut(s) 161, 542
Hsp92II CATG 5 cut(s) 157, 260, 416, 494, 539
HspAI GCGC 1 cut(s) 127
LmnI GCTCC 2 cut(s) 138, 583
LpnPI CCDG 8 cut(s) 105, 115, 219, 234, 377, 459, 486, 572
Lsp1109I GCAGC 2 cut(s) 32, 358
LweI GCATC 1 cut(s) 84
MaeI CTAG 1 cut(s) 332
MaeIII GTNAC 2 cut(s) 484, 571
MbiI CCGCTC 1 cut(s) 271
MboII GAAGA 2 cut(s) 126, 455
MhlI GDGCHC 2 cut(s) 301, 382
MluCI AATT 3 cut(s) 4, 286, 584
MnlI CCTC 6 cut(s) 69, 168, 186, 230, 314, 349
MseI TTAA 1 cut(s) 461
MspR9I CCNGG 1 cut(s) 474
Mva1269I GAATGC 1 cut(s) 129
MvaI CCWGG 1 cut(s) 474
MwoI GCNNNNNNNGC 1 cut(s) 536
NlaIII CATG 5 cut(s) 157, 260, 416, 494, 539
NlaIV GGNNCC 1 cut(s) 467
NsbI TGCGCA 1 cut(s) 128
NspI RCATGY 1 cut(s) 157
NspV TTCGAA 1 cut(s) 604
PceI AGGCCT 1 cut(s) 219
PctI GAATGC 1 cut(s) 129
PfeI GAWTC 1 cut(s) 388
PflMI CCANNNNNTGG 1 cut(s) 248
PkrI GCNGC 2 cut(s) 22, 348
PsiI TTATAA 1 cut(s) 590
Psp6I CCWGG 1 cut(s) 472
PspGI CCWGG 1 cut(s) 472
PspN4I GGNNCC 1 cut(s) 467
SaqAI TTAA 1 cut(s) 461
SatI GCNGC 2 cut(s) 21, 347
ScrFI CCNGG 1 cut(s) 474
SduI GDGCHC 2 cut(s) 301, 382
SetI ASST 8 cut(s) 25, 90, 134, 265, 337, 360, 564, 580
SfaNI GCATC 1 cut(s) 84
SfcI CTRYAG 1 cut(s) 264
SfuI TTCGAA 1 cut(s) 604
SmlI CTYRAG 2 cut(s) 60, 305
SmoI CTYRAG 2 cut(s) 60, 305
Sse9I AATT 3 cut(s) 4, 286, 584
SseBI AGGCCT 1 cut(s) 219
SsiI CCGC 2 cut(s) 271, 311
SspI AATATT 1 cut(s) 363
SspMI CTAG 1 cut(s) 332
StuI AGGCCT 1 cut(s) 219
StyD4I CCNGG 1 cut(s) 472
TaaI ACNGT 3 cut(s) 180, 402, 514
TaqI TCGA 1 cut(s) 604
TaqII GACCGA 1 cut(s) 394
TasI AATT 3 cut(s) 4, 286, 584
TfiI GAWTC 1 cut(s) 388
Tru1I TTAA 1 cut(s) 461
Tru9I TTAA 1 cut(s) 461
TscAI CASTG 1 cut(s) 185
TseI GCWGC 2 cut(s) 20, 346
TspDTI ATGAA 4 cut(s) 17, 95, 299, 443
TspRI CASTG 1 cut(s) 185
Van91I CCANNNNNTGG 1 cut(s) 248
VneI GTGCAC 1 cut(s) 378
XagI CCTNNNNNAGG 1 cut(s) 63
XapI RAATTY 1 cut(s) 584
XceI RCATGY 1 cut(s) 157
XspI CTAG 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.