Rmu_sc0000146.1_g000019

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000146.1
OG0000428
Physical Location & Seq
Forward (+)
59212 .. 60075
864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000146.1_g000019.1.cds

Sequence Viewer

Length: 864 bp
atgtcacaaggagaaacaagccggaaacggatgaagagctcctcaaagcaagacgaaacaaaggccgtctttgacgtcaacacaatgaggccttctttgcctaaccttgttattcatcgaatactcggattgcttcccactaaagccgctgtccgaatgagctttcattccaagcaatgggaaggtgtatggtccttgaaccctgtaatagatttcgacgagtctggaaagactgatgacgacgacgtgatttttcatcaactagttcaacacaaaaacttcatccacattttgcaatcgtatttggaattccgtgagaaagacaggacgacaccagttttggataagttcaaacttcacatgaggagatacttatttagagattctgctatcgtagataagtggttgagttttgcatttgagagaagcgtcaaggaggtagatcttagccttgatattgcttggcataaacggttggaattttactattgcatatcgccaatgagttttcttaatgcaaaatccataactactttgaatttggagtttgtgagaatacaacacgtgtactgtcctgagcttacagatacaagagttcttccttctttgagaaacatgtctctgaaaagtgtccacttcaactgccgggctcctctgggcttaattcgggagtgcccttccatcgaatatctgtcattaacttcatgttactttgaagacttggcattttatttttcaagttctagtctcaaatctttgaaagctacggattgcgaagctcatcttattaaggtggacgaagctgtgaatcttgaacactacattttcgtcaaaattccagctcaagagtatgattttgaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box LRR_2

Protein Analysis

287

Amino Acids

33.58

Weight (kDa)

6.83

Isoelectric Point (pI)

52.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 78
AccB7I CCANNNNNTGG 1 cut(s) 177
AciI CCGC 1 cut(s) 147
AcsI RAATTY 4 cut(s) 308, 479, 538, 834
AcvI CACGTG 1 cut(s) 565
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 1 cut(s) 569
AfiI CCNNNNNNNGG 1 cut(s) 177
AflIII ACRYGT 3 cut(s) 562, 564, 615
AhlI ACTAGT 1 cut(s) 262
AjiI CACGTC 1 cut(s) 247
AluBI AGCT 7 cut(s) 39, 162, 580, 764, 779, 803, 842
AluI AGCT 7 cut(s) 39, 162, 580, 764, 779, 803, 842
Alw21I GWGCWC 1 cut(s) 41
Alw26I GTCTC 2 cut(s) 624, 752
AoxI GGCC 2 cut(s) 63, 89
ApoI RAATTY 4 cut(s) 308, 479, 538, 834
ArsI GACNNNNNNTTYG 2 cut(s) 322, 354
AspS9I GGNCC 1 cut(s) 192
AsuC2I CCSGG 1 cut(s) 647
AvaII GGWCC 1 cut(s) 192
BaeGI GKGCMC 1 cut(s) 677
BaeI ACNNNNGTAYC 2 cut(s) 579, 612
BanII GRGCYC 2 cut(s) 41, 652
BbrPI CACGTG 1 cut(s) 565
BbsI GAAGAC 1 cut(s) 723
Bbv12I GWGCWC 1 cut(s) 41
BccI CCATC 1 cut(s) 689
BceAI ACGGC 1 cut(s) 50
BcnI CCSGG 1 cut(s) 647
BcoDI GTCTC 2 cut(s) 624, 752
BcuI ACTAGT 1 cut(s) 262
BfaI CTAG 2 cut(s) 263, 744
BglII AGATCT 1 cut(s) 442
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
Bme1390I CCNGG 1 cut(s) 647
Bme18I GGWCC 1 cut(s) 192
BmgBI CACGTC 1 cut(s) 247
BmgT120I GGNCC 1 cut(s) 192
BmiI GGNNCC 1 cut(s) 651
BmrFI CCNGG 1 cut(s) 647
BpiI GAAGAC 1 cut(s) 723
Bpu10I CCTNAGC 1 cut(s) 576
BpuEI CTTGAG 1 cut(s) 828
BpuMI CCSGG 1 cut(s) 647
BsaAI YACGTR 1 cut(s) 565
BsaHI GRCGYC 1 cut(s) 75
Bsc4I CCNNNNNNNGG 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 335
Bse3DI GCAATG 1 cut(s) 182
BseGI GGATG 2 cut(s) 36, 282
BseLI CCNNNNNNNGG 1 cut(s) 177
BseMI GCAATG 1 cut(s) 182
BseMII CTCAG 1 cut(s) 567
BseNI ACTGG 1 cut(s) 335
BseRI GAGGAG 3 cut(s) 31, 379, 642
BseSI GKGCMC 1 cut(s) 677
BshFI GGCC 2 cut(s) 65, 91
BsiHKAI GWGCWC 1 cut(s) 41
BsiSI CCGG 2 cut(s) 22, 646
BslI CCNNNNNNNGG 1 cut(s) 177
BsmAI GTCTC 2 cut(s) 624, 752
BsnI GGCC 2 cut(s) 65, 91
Bsp1286I GDGCHC 3 cut(s) 41, 652, 677
Bsp143I GATC 1 cut(s) 442
BspACI CCGC 1 cut(s) 147
BspANI GGCC 2 cut(s) 65, 91
BspCNI CTCAG 1 cut(s) 568
BspLI GGNNCC 1 cut(s) 651
BspQI GCTCTTC 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 182
BsrI ACTGG 1 cut(s) 335
BssMI GATC 1 cut(s) 442
BssNI GRCGYC 1 cut(s) 75
Bst4CI ACNGT 2 cut(s) 474, 572
Bst6I CTCTTC 1 cut(s) 29
BstACI GRCGYC 1 cut(s) 75
BstBAI YACGTR 1 cut(s) 565
BstDEI CTNAG 2 cut(s) 446, 576
BstF5I GGATG 2 cut(s) 36, 282
BstKTI GATC 1 cut(s) 445
BstMAI GTCTC 2 cut(s) 624, 752
BstMBI GATC 1 cut(s) 442
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstNSI RCATGY 1 cut(s) 619
BstSCI CCNGG 1 cut(s) 645
BstSLI GKGCMC 1 cut(s) 677
BstV2I GAAGAC 1 cut(s) 723
BstX2I RGATCY 1 cut(s) 442
BstYI RGATCY 1 cut(s) 442
BsuRI GGCC 2 cut(s) 65, 91
BtrI CACGTC 1 cut(s) 247
BtsCI GGATG 2 cut(s) 36, 282
Cfr13I GGNCC 1 cut(s) 192
CseI GACGC 1 cut(s) 418
Csp6I GTAC 1 cut(s) 568
CviAII CATG 3 cut(s) 361, 616, 705
CviQI GTAC 1 cut(s) 568
DdeI CTNAG 2 cut(s) 446, 576
DpnI GATC 1 cut(s) 444
DpnII GATC 1 cut(s) 442
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
Ecl136II GAGCTC 1 cut(s) 39
Eco147I AGGCCT 1 cut(s) 91
Eco24I GRGCYC 2 cut(s) 41, 652
Eco47I GGWCC 1 cut(s) 192
Eco53kI GAGCTC 1 cut(s) 39
Eco72I CACGTG 1 cut(s) 565
EcoICRI GAGCTC 1 cut(s) 39
EcoRI GAATTC 1 cut(s) 308
EcoT38I GRGCYC 2 cut(s) 41, 652
FaeI CATG 3 cut(s) 364, 619, 708
FaiI YATR 8 cut(s) 190, 362, 468, 494, 527, 617, 706, 852
FalI AAGNNNNNCTT 4 cut(s) 53, 85, 768, 800
FatI CATG 3 cut(s) 360, 615, 704
Fnu4HI GCNGC 1 cut(s) 147
FokI GGATG 2 cut(s) 43, 269
FriOI GRGCYC 2 cut(s) 41, 652
Fsp4HI GCNGC 1 cut(s) 147
FspBI CTAG 2 cut(s) 263, 744
GluI GCNGC 1 cut(s) 147
HaeIII GGCC 2 cut(s) 65, 91
HapII CCGG 2 cut(s) 22, 646
HgaI GACGC 1 cut(s) 418
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 3 cut(s) 364, 619, 708
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HinfI GANTC 3 cut(s) 221, 383, 808
HpaII CCGG 2 cut(s) 22, 646
Hpy166II GTNNAC 4 cut(s) 79, 568, 634, 796
Hpy188I TCNGA 3 cut(s) 128, 155, 624
Hpy188III TCNNGA 5 cut(s) 225, 575, 668, 812, 845
Hpy8I GTNNAC 4 cut(s) 79, 568, 634, 796
Hpy99I CGWCG 3 cut(s) 221, 245, 248
HpyAV CCTTC 4 cut(s) 102, 176, 612, 687
HpyCH4III ACNGT 2 cut(s) 474, 572
HpyCH4IV ACGT 3 cut(s) 75, 246, 564
HpyCH4V TGCA 4 cut(s) 295, 416, 492, 518
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
HpyF3I CTNAG 2 cut(s) 446, 576
HpySE526I ACGT 3 cut(s) 75, 246, 564
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 3 cut(s) 364, 619, 708
Kzo9I GATC 1 cut(s) 442
LguI GCTCTTC 1 cut(s) 29
LmnI GCTCC 2 cut(s) 44, 655
LpnPI CCDG 9 cut(s) 35, 210, 216, 310, 348, 588, 641, 659, 852
MaeI CTAG 2 cut(s) 263, 744
MaeII ACGT 3 cut(s) 75, 246, 564
MaeIII GTNAC 2 cut(s) 3, 707
MalI GATC 1 cut(s) 444
MboI GATC 1 cut(s) 442
MboII GAAGA 3 cut(s) 46, 590, 728
MflI RGATCY 1 cut(s) 442
MhlI GDGCHC 3 cut(s) 41, 652, 677
MluCI AATT 5 cut(s) 308, 479, 538, 663, 834
MlyI GAGTC 1 cut(s) 230
MmeI TCCRAC 1 cut(s) 456
MnlI CCTC 5 cut(s) 52, 81, 357, 430, 663
MseI TTAA 4 cut(s) 513, 662, 698, 789
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 2 cut(s) 22, 646
MspR9I CCNGG 1 cut(s) 647
MwoI GCNNNNNNNGC 1 cut(s) 97
NciI CCSGG 1 cut(s) 647
NdeII GATC 1 cut(s) 442
NlaIII CATG 3 cut(s) 364, 619, 708
NlaIV GGNNCC 1 cut(s) 651
NmuCI GTSAC 1 cut(s) 3
NspI RCATGY 1 cut(s) 619
PceI AGGCCT 1 cut(s) 91
PciI ACATGT 1 cut(s) 615
PciSI GCTCTTC 1 cut(s) 29
PfeI GAWTC 2 cut(s) 383, 808
PflMI CCANNNNNTGG 1 cut(s) 177
PkrI GCNGC 1 cut(s) 148
PleI GAGTC 1 cut(s) 229
PmaCI CACGTG 1 cut(s) 565
PmlI CACGTG 1 cut(s) 565
PpsI GAGTC 1 cut(s) 229
Ppu21I YACGTR 1 cut(s) 565
PscI ACATGT 1 cut(s) 615
Psp124BI GAGCTC 1 cut(s) 41
PspCI CACGTG 1 cut(s) 565
PspN4I GGNNCC 1 cut(s) 651
PspPI GGNCC 1 cut(s) 192
PsuI RGATCY 1 cut(s) 442
RsaI GTAC 1 cut(s) 569
RsaNI GTAC 1 cut(s) 568
SacI GAGCTC 1 cut(s) 41
SapI GCTCTTC 1 cut(s) 29
SaqAI TTAA 4 cut(s) 513, 662, 698, 789
SatI GCNGC 1 cut(s) 147
Sau3AI GATC 1 cut(s) 442
Sau96I GGNCC 1 cut(s) 192
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 1 cut(s) 647
SduI GDGCHC 3 cut(s) 41, 652, 677
SinI GGWCC 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 843
SmoI CTYRAG 1 cut(s) 843
SpeI ACTAGT 1 cut(s) 262
Sse9I AATT 5 cut(s) 308, 479, 538, 663, 834
SseBI AGGCCT 1 cut(s) 91
SsiI CCGC 1 cut(s) 147
SspMI CTAG 2 cut(s) 263, 744
SstI GAGCTC 1 cut(s) 41
StuI AGGCCT 1 cut(s) 91
StyD4I CCNGG 1 cut(s) 645
TaaI ACNGT 2 cut(s) 474, 572
TaiI ACGT 3 cut(s) 78, 249, 567
TaqI TCGA 3 cut(s) 118, 216, 684
TasI AATT 5 cut(s) 308, 479, 538, 663, 834
TatI WGTACW 1 cut(s) 567
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 2 cut(s) 383, 808
Tru1I TTAA 4 cut(s) 513, 662, 698, 789
Tru9I TTAA 4 cut(s) 513, 662, 698, 789
TseFI GTSAC 1 cut(s) 3
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 6 cut(s) 47, 104, 155, 245, 271, 693
TspGWI ACGGA 3 cut(s) 43, 302, 782
Van91I CCANNNNNTGG 1 cut(s) 177
VpaK11BI GGWCC 1 cut(s) 192
XapI RAATTY 4 cut(s) 308, 479, 538, 834
XceI RCATGY 1 cut(s) 619
XspI CTAG 2 cut(s) 263, 744
ZraI GACGTC 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.