Rh2DG169700

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000428
Physical Location & Seq
Forward (+)
14823102 .. 14823728
627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG169700.1

Sequence Viewer

Length: 627 bp
ATGGCTGTGGACACATTGCTACCTCACCTTCTAGACCTTATTGTTCACAAGATTTTCCGACTCATTCCCACTAAACTTGCCATACGCTCAGCCATTGTTTCCAAACAATGGGCAACTGTGTGGTCTTTGGGAGTCCCTCTCTTAGATTTCGATGACGAGGGGGACTCTACTGATCATGATGGTGACAATCTCGTCCGCAGGAAGCTGTTGTTCATCGACTTTGTGGAAAACTGTTTGAAACATTGTGAGAAAAACAAGCTTTTGCAGTTGGATAGTTTCAGGCTTCGAATGAGATATGATTCTGAATTAATAGGAGCGACAAGAATAGACAAGTGGTTTAGTTTTGTGGCTGATAGATGCGTCAAAGAGTTAGATATCAGCATTCAAAGAAAAGATGACAATGATCCGGTCGAACGCACATACTACTGCATACCCCATACCATTCTCAATGCGCAATTTCTTACTAGTCTGAATCTAGAGCATGTGAGAATACCGGAGAGTAATGATCTGATAAGCCTTCCGTCGTTGAAAACTATGTCCCTAAACGCTGTGCTGTTTGATTGCTGCATTGATTTGGATCCAGAGTCCTTCCATCGAGCATTTGTCGCTAGTTTCGTGTTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

208

Amino Acids

24.07

Weight (kDa)

5.46

Isoelectric Point (pI)

29.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 191
Acc16I TGCGCA 1 cut(s) 453
AccB7I CCANNNNNTGG 1 cut(s) 108
AciI CCGC 1 cut(s) 196
AclWI GGATC 3 cut(s) 398, 572, 585
AfiI CCNNNNNNNGG 1 cut(s) 108
AgsI TTSAA 3 cut(s) 238, 386, 529
AhlI ACTAGT 1 cut(s) 464
AluBI AGCT 2 cut(s) 205, 259
AluI AGCT 2 cut(s) 205, 259
AlwI GGATC 3 cut(s) 398, 572, 585
ApeKI GCWGC 1 cut(s) 564
AseI ATTAAT 1 cut(s) 308
AspLEI GCGC 1 cut(s) 454
AsuHPI GGTGA 2 cut(s) 17, 194
AsuII TTCGAA 1 cut(s) 286
BamHI GGATCC 1 cut(s) 577
BbvI GCAGC 1 cut(s) 551
BccI CCATC 2 cut(s) 173, 600
BclI TGATCA 1 cut(s) 172
BcuI ACTAGT 1 cut(s) 464
BfaI CTAG 4 cut(s) 32, 465, 476, 609
BisI GCNGC 1 cut(s) 565
BlpI GCTNAGC 1 cut(s) 88
BlsI GCNGC 1 cut(s) 566
BmiI GGNNCC 1 cut(s) 579
BmsI GCATC 1 cut(s) 347
BplI GAGNNNNNCTC 4 cut(s) 123, 155, 149, 181
Bpu1102I GCTNAGC 1 cut(s) 88
Bpu14I TTCGAA 1 cut(s) 286
BsaBI GATNNNNATC 1 cut(s) 576
BsaWI WCCGGW 2 cut(s) 406, 493
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse3DI GCAATG 1 cut(s) 14
Bse8I GATNNNNATC 1 cut(s) 576
BseJI GATNNNNATC 1 cut(s) 576
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMI GCAATG 1 cut(s) 14
BseMII CTCAG 1 cut(s) 102
BseXI GCAGC 1 cut(s) 551
Bsh1285I CGRYCG 1 cut(s) 411
BsiEI CGRYCG 1 cut(s) 411
BsiSI CCGG 2 cut(s) 407, 494
BslFI GGGAC 3 cut(s) 119, 176, 523
BslI CCNNNNNNNGG 1 cut(s) 108
BsmFI GGGAC 3 cut(s) 119, 176, 523
BsmI GAATGC 1 cut(s) 381
Bsp119I TTCGAA 1 cut(s) 286
Bsp143I GATC 4 cut(s) 172, 403, 505, 577
Bsp1720I GCTNAGC 1 cut(s) 88
BspACI CCGC 1 cut(s) 196
BspCNI CTCAG 1 cut(s) 101
BspHI TCATGA 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 579
BspPI GGATC 3 cut(s) 398, 572, 585
BspT104I TTCGAA 1 cut(s) 286
BsrDI GCAATG 1 cut(s) 14
BssMI GATC 4 cut(s) 172, 403, 505, 577
Bst4CI ACNGT 2 cut(s) 118, 233
BstBI TTCGAA 1 cut(s) 286
BstDEI CTNAG 2 cut(s) 88, 142
BstHHI GCGC 1 cut(s) 454
BstKTI GATC 4 cut(s) 175, 406, 508, 580
BstMBI GATC 4 cut(s) 172, 403, 505, 577
BstMCI CGRYCG 1 cut(s) 411
BstMWI GCNNNNNNNGC 1 cut(s) 605
BstNSI RCATGY 1 cut(s) 485
BstV1I GCAGC 1 cut(s) 551
BstX2I RGATCY 1 cut(s) 577
BstYI RGATCY 1 cut(s) 577
CciI TCATGA 1 cut(s) 175
CfoI GCGC 1 cut(s) 454
CseI GACGC 1 cut(s) 349
CspCI CAANNNNNGTGG 2 cut(s) 58, 93
CviAII CATG 2 cut(s) 176, 482
CviJI RGCY 7 cut(s) 5, 92, 205, 259, 283, 350, 516
CviKI_1 RGCY 7 cut(s) 5, 92, 205, 259, 283, 350, 516
DdeI CTNAG 2 cut(s) 88, 142
DpnI GATC 4 cut(s) 174, 405, 507, 579
DpnII GATC 4 cut(s) 172, 403, 505, 577
DrdI GACNNNNNNGTC 1 cut(s) 191
DseDI GACNNNNNNGTC 1 cut(s) 191
Eco32I GATATC 1 cut(s) 376
EcoRV GATATC 1 cut(s) 376
FaeI CATG 2 cut(s) 179, 485
FaiI YATR 8 cut(s) 83, 177, 297, 421, 431, 438, 483, 536
FaqI GGGAC 3 cut(s) 119, 176, 523
FatI CATG 2 cut(s) 175, 481
FbaI TGATCA 1 cut(s) 172
Fnu4HI GCNGC 1 cut(s) 565
Fsp4HI GCNGC 1 cut(s) 565
FspBI CTAG 4 cut(s) 32, 465, 476, 609
FspI TGCGCA 1 cut(s) 453
GlaI GCGC 1 cut(s) 453
GluI GCNGC 1 cut(s) 565
HapII CCGG 2 cut(s) 407, 494
HgaI GACGC 1 cut(s) 349
HhaI GCGC 1 cut(s) 454
Hin1II CATG 2 cut(s) 179, 485
Hin6I GCGC 1 cut(s) 452
HinP1I GCGC 1 cut(s) 452
HindIII AAGCTT 1 cut(s) 257
HinfI GANTC 6 cut(s) 60, 132, 164, 299, 472, 584
HpaII CCGG 2 cut(s) 407, 494
HphI GGTGA 2 cut(s) 17, 194
Hpy166II GTNNAC 2 cut(s) 10, 46
Hpy188I TCNGA 4 cut(s) 59, 304, 471, 510
Hpy188III TCNNGA 4 cut(s) 32, 176, 476, 581
Hpy8I GTNNAC 2 cut(s) 10, 46
Hpy99I CGWCG 1 cut(s) 526
HpyAV CCTTC 3 cut(s) 38, 527, 598
HpyCH4III ACNGT 2 cut(s) 118, 233
HpyCH4V TGCA 3 cut(s) 265, 429, 567
HpyF10VI GCNNNNNNNGC 1 cut(s) 605
HpyF3I CTNAG 2 cut(s) 88, 142
Hsp92II CATG 2 cut(s) 179, 485
HspAI GCGC 1 cut(s) 452
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 4 cut(s) 172, 403, 505, 577
LmnI GCTCC 1 cut(s) 314
LpnPI CCDG 5 cut(s) 184, 265, 420, 507, 594
Lsp1109I GCAGC 1 cut(s) 551
LweI GCATC 1 cut(s) 347
MaeI CTAG 4 cut(s) 32, 465, 476, 609
MaeIII GTNAC 1 cut(s) 182
MalI GATC 4 cut(s) 174, 405, 507, 579
MboI GATC 4 cut(s) 172, 403, 505, 577
MflI RGATCY 1 cut(s) 577
MluCI AATT 2 cut(s) 305, 455
MlyI GAGTC 4 cut(s) 54, 141, 158, 593
MmeI TCCRAC 2 cut(s) 82, 249
MnlI CCTC 3 cut(s) 33, 147, 151
MseI TTAA 1 cut(s) 308
MslI CAYNNNNRTG 1 cut(s) 180
MspI CCGG 2 cut(s) 407, 494
Mva1269I GAATGC 1 cut(s) 381
MwoI GCNNNNNNNGC 1 cut(s) 605
NdeII GATC 4 cut(s) 172, 403, 505, 577
NlaIII CATG 2 cut(s) 179, 485
NlaIV GGNNCC 1 cut(s) 579
NmuCI GTSAC 1 cut(s) 182
NsbI TGCGCA 1 cut(s) 453
NspI RCATGY 1 cut(s) 485
NspV TTCGAA 1 cut(s) 286
PagI TCATGA 1 cut(s) 175
PcsI WCGNNNNNNNCGW 1 cut(s) 612
PctI GAATGC 1 cut(s) 381
PfeI GAWTC 2 cut(s) 299, 472
PflMI CCANNNNNTGG 1 cut(s) 108
PkrI GCNGC 1 cut(s) 566
PleI GAGTC 4 cut(s) 54, 140, 158, 592
PpsI GAGTC 4 cut(s) 54, 140, 158, 592
PshBI ATTAAT 1 cut(s) 308
PspN4I GGNNCC 1 cut(s) 579
PsuI RGATCY 1 cut(s) 577
RseI CAYNNNNRTG 1 cut(s) 180
SaqAI TTAA 1 cut(s) 308
SatI GCNGC 1 cut(s) 565
Sau3AI GATC 4 cut(s) 172, 403, 505, 577
SchI GAGTC 4 cut(s) 54, 141, 158, 593
SetI ASST 5 cut(s) 25, 30, 39, 207, 261
SfaNI GCATC 1 cut(s) 347
SfuI TTCGAA 1 cut(s) 286
SmiMI CAYNNNNRTG 1 cut(s) 180
SpeI ACTAGT 1 cut(s) 464
Sse9I AATT 2 cut(s) 305, 455
SsiI CCGC 1 cut(s) 196
SspMI CTAG 4 cut(s) 32, 465, 476, 609
TaaI ACNGT 2 cut(s) 118, 233
TaqI TCGA 5 cut(s) 150, 216, 286, 411, 595
TasI AATT 2 cut(s) 305, 455
TfiI GAWTC 2 cut(s) 299, 472
Tru1I TTAA 1 cut(s) 308
Tru9I TTAA 1 cut(s) 308
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 1 cut(s) 564
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 202
TspGWI ACGGA 1 cut(s) 510
Van91I CCANNNNNTGG 1 cut(s) 108
VspI ATTAAT 1 cut(s) 308
XbaI TCTAGA 2 cut(s) 31, 475
XceI RCATGY 1 cut(s) 485
XspI CTAG 4 cut(s) 32, 465, 476, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.