RchiOBHm_Chr1g0360131

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000428
Physical Location & Seq
Forward (+)
51935093 .. 51936373
1281 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58515

Sequence Viewer

Length: 1281 bp
ATGGCCATGGCTGTAAACCCAATACCGCCAGACTTGCCCGACCTTGTTATTCACCGAATCCTCCAACTCCTTCCCACTAAATCTGCTATCCGCATGAGCTTTCTTTCCAAGGAATGGCAAGATGCATGTTGTTTGGGCCCTGTAATAGATTTCAACGAGGGAGGTGATGACAACAACCTTCATGAACATACAAAGTTCGTCGAGAACATCCTCAATAGGTATTTGGAAATATGTGAGAAAGACCCAAACAAACGGAATCTAGAGAAATTCAAGCTCCACATGACCAGGTACTCATCCAGAGACGCTAATATTGTAACTAAATGGTTGATATTTTCATGTAAGAGAAGCGTGAAAGAGTTAGATATTAGCCTTATGCCAGTTAGTGAATTGAACTACGACATGTTGTCATGTTTGGATCCTCTCGAAGCAAGCAGGGCTGCAAGTCGCATGAAAAACTTGTTTTACTTGTCTCGGATGGCTCTTGTGAGTCTTGTCAATGCAAAATCTGTAACTACTCTAAATTTAGAGTATGTGAGAATGAAGAAAATCTACAATAAGCATCCTATATCTGTTGGTCTGCTTCCCTCTTTGAAATCCATGTCCTTCAAGAGGCTGCATTTCGACTACGAAGCTCTCCTCTCCTTAATTTCTGAGTGCCCTTTCATTGAACACTTGTCACTAACTTCATGTTCTTTCCAAGGGGACATTTATATGCGGAGTTCCAGTCTCAAATCTTTGGAAATTGACCGATGCGAGGCTCTTTTAGTCCGAGTCTATGAAGCTATAAATCTTAAATCTCTTTCAGTTGTATCAGGTTTCGGTTCATCTGAATTTTCGCAGCTTGAGCAGGTGATATTTAGAGATTGCCTCAAATTGAAATGTATGAACATACATGCTTCGCACTTGCGTTTCCTTAATTTAGATGGATGCCATAATGTGAAAGGCACAATCGATGCTCCAAAGCTCGAATTTTTCAATTTCGTTGGTTACTTGAAGTGCAAGTTCTCTTTGAAAGCTCCAAATCTGAGGATGACCCGCATTGAACTAATCGAAAATTGGGATAGAGAAGCAGCCACTTCCAACAGGCAATGGAAACATTTTACAACACTGAGCGATTTTCTTCAAGAATTTGGTATATCCAAAAGTTTGTACCTCTGTGTTTCTGATTTTAAGGCTGTCATATTTCCAAAAGATTTCAGAAAGACTTTGTCTTCTCCAATATTTCCAAATCTCGAAGAACTTCATTTCTCAGCGAAGATTCCATGCCTGCAAGTAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box LRR_2

Protein Analysis

426

Amino Acids

49.04

Weight (kDa)

8.73

Isoelectric Point (pI)

47.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 11 - 43 5.6e-07 F-box domain
LRR_At5g56370 PF24758 162 - 294 1.9e-07 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 838
Acc36I ACCTGC 1 cut(s) 838
AccB7I CCANNNNNTGG 1 cut(s) 114
AciI CCGC 4 cut(s) 26, 91, 715, 1036
AclWI GGATC 2 cut(s) 410, 423
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 5 cut(s) 266, 520, 830, 968, 1127
AfaI GTAC 2 cut(s) 290, 1151
AfiI CCNNNNNNNGG 3 cut(s) 114, 609, 754
AflIII ACRYGT 1 cut(s) 399
AhdI GACNNNNNGTC 1 cut(s) 403
AjnI CCWGG 1 cut(s) 284
AluBI AGCT 7 cut(s) 99, 274, 632, 782, 841, 964, 1016
AluI AGCT 7 cut(s) 99, 274, 632, 782, 841, 964, 1016
Alw26I GTCTC 3 cut(s) 294, 474, 731
AlwI GGATC 2 cut(s) 410, 423
AoxI GGCC 2 cut(s) 3, 136
ApaI GGGCCC 1 cut(s) 140
ApeKI GCWGC 4 cut(s) 437, 613, 838, 1070
ApoI RAATTY 5 cut(s) 266, 520, 830, 968, 1127
Asp700I GAANNNNTTC 1 cut(s) 1239
AspS9I GGNCC 2 cut(s) 136, 137
AsuHPI GGTGA 3 cut(s) 44, 176, 862
BaeGI GKGCMC 2 cut(s) 140, 659
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 415
BanII GRGCYC 1 cut(s) 140
BarI GAAGNNNNNNTAC 2 cut(s) 533, 565
BbsI GAAGAC 1 cut(s) 1203
BbvI GCAGC 4 cut(s) 424, 600, 850, 1082
BccI CCATC 2 cut(s) 469, 917
BciT130I CCWGG 1 cut(s) 286
BcoDI GTCTC 3 cut(s) 294, 474, 731
BfaI CTAG 1 cut(s) 260
BfuAI ACCTGC 1 cut(s) 838
BisI GCNGC 4 cut(s) 438, 614, 839, 1071
BlsI GCNGC 4 cut(s) 439, 615, 840, 1072
Bme1390I CCNGG 1 cut(s) 286
BmeRI GACNNNNNGTC 1 cut(s) 403
BmgT120I GGNCC 2 cut(s) 136, 137
BmiI GGNNCC 2 cut(s) 138, 417
BmrFI CCNGG 1 cut(s) 286
BmsI GCATC 5 cut(s) 112, 568, 740, 917, 943
BpiI GAAGAC 1 cut(s) 1203
BplI GAGNNNNNCTC 2 cut(s) 852, 884
BpuEI CTTGAG 1 cut(s) 863
Bsa29I ATCGAT 1 cut(s) 951
BsaJI CCNNGG 3 cut(s) 6, 108, 697
BsaXI ACNNNNNCTCC 2 cut(s) 709, 739
Bsc4I CCNNNNNNNGG 3 cut(s) 114, 609, 754
Bse1I ACTGG 2 cut(s) 377, 723
Bse3DI GCAATG 1 cut(s) 1094
BseBI CCWGG 1 cut(s) 286
BseCI ATCGAT 1 cut(s) 951
BseDI CCNNGG 3 cut(s) 6, 108, 697
BseGI GGATG 6 cut(s) 207, 293, 480, 559, 932, 1035
BseLI CCNNNNNNNGG 3 cut(s) 114, 609, 754
BseMI GCAATG 1 cut(s) 1094
BseMII CTCAG 4 cut(s) 642, 1016, 1100, 1263
BseNI ACTGG 2 cut(s) 377, 723
BseRI GAGGAG 1 cut(s) 626
BseSI GKGCMC 2 cut(s) 140, 659
BseXI GCAGC 4 cut(s) 424, 600, 850, 1082
BshFI GGCC 2 cut(s) 5, 138
BshVI ATCGAT 1 cut(s) 951
BslFI GGGAC 1 cut(s) 716
BslI CCNNNNNNNGG 3 cut(s) 114, 609, 754
BsmAI GTCTC 3 cut(s) 294, 474, 731
BsmBI CGTCTC 1 cut(s) 294
BsmFI GGGAC 1 cut(s) 716
BsnI GGCC 2 cut(s) 5, 138
Bsp120I GGGCCC 1 cut(s) 136
Bsp1286I GDGCHC 2 cut(s) 140, 659
Bsp143I GATC 1 cut(s) 415
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 4 cut(s) 26, 91, 715, 1036
BspANI GGCC 2 cut(s) 5, 138
BspCNI CTCAG 4 cut(s) 643, 1017, 1101, 1262
BspDI ATCGAT 1 cut(s) 951
BspHI TCATGA 1 cut(s) 181
BspLI GGNNCC 2 cut(s) 138, 417
BspMI ACCTGC 1 cut(s) 838
BspPI GGATC 2 cut(s) 410, 423
BsrDI GCAATG 1 cut(s) 1094
BsrI ACTGG 2 cut(s) 377, 723
BssECI CCNNGG 3 cut(s) 6, 108, 697
BssMI GATC 1 cut(s) 415
BssT1I CCWWGG 3 cut(s) 6, 108, 697
Bst2UI CCWGG 1 cut(s) 286
BstC8I GCNNGC 2 cut(s) 430, 1268
BstDEI CTNAG 4 cut(s) 651, 1025, 1109, 1249
BstDSI CCRYGG 1 cut(s) 6
BstENI CCTNNNNNAGG 1 cut(s) 607
BstF5I GGATG 6 cut(s) 207, 293, 480, 559, 932, 1035
BstKTI GATC 1 cut(s) 418
BstMAI GTCTC 3 cut(s) 294, 474, 731
BstMBI GATC 1 cut(s) 415
BstMWI GCNNNNNNNGC 3 cut(s) 34, 434, 844
BstNI CCWGG 1 cut(s) 286
BstNSI RCATGY 3 cut(s) 129, 403, 896
BstSCI CCNGG 1 cut(s) 284
BstSLI GKGCMC 2 cut(s) 140, 659
BstV1I GCAGC 4 cut(s) 424, 600, 850, 1082
BstV2I GAAGAC 1 cut(s) 1203
BstX2I RGATCY 1 cut(s) 415
BstYI RGATCY 1 cut(s) 415
Bsu15I ATCGAT 1 cut(s) 951
BsuRI GGCC 2 cut(s) 5, 138
BsuTUI ATCGAT 1 cut(s) 951
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 6 cut(s) 207, 293, 480, 559, 932, 1035
BtsIMutI CAGTG 1 cut(s) 1106
BveI ACCTGC 1 cut(s) 838
Cac8I GCNNGC 2 cut(s) 430, 1268
CciI TCATGA 1 cut(s) 181
Cfr13I GGNCC 2 cut(s) 136, 137
ClaI ATCGAT 1 cut(s) 951
CseI GACGC 1 cut(s) 311
CsiI ACCWGGT 1 cut(s) 284
Csp6I GTAC 2 cut(s) 289, 1150
CviQI GTAC 2 cut(s) 289, 1150
DdeI CTNAG 4 cut(s) 651, 1025, 1109, 1249
DpnI GATC 1 cut(s) 417
DpnII GATC 1 cut(s) 415
DriI GACNNNNNGTC 1 cut(s) 403
EaeI YGGCCR 1 cut(s) 3
Eam1105I GACNNNNNGTC 1 cut(s) 403
Eco130I CCWWGG 3 cut(s) 6, 108, 697
Eco24I GRGCYC 1 cut(s) 140
EcoNI CCTNNNNNAGG 1 cut(s) 607
EcoO109I RGGNCCY 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 284
EcoT14I CCWWGG 3 cut(s) 6, 108, 697
EcoT22I ATGCAT 1 cut(s) 127
EcoT38I GRGCYC 1 cut(s) 140
ErhI CCWWGG 3 cut(s) 6, 108, 697
Esp3I CGTCTC 1 cut(s) 294
FaqI GGGAC 1 cut(s) 716
FauI CCCGC 1 cut(s) 1043
Fnu4HI GCNGC 4 cut(s) 438, 614, 839, 1071
FokI GGATG 6 cut(s) 194, 280, 487, 546, 939, 1042
FriOI GRGCYC 1 cut(s) 140
Fsp4HI GCNGC 4 cut(s) 438, 614, 839, 1071
FspBI CTAG 1 cut(s) 260
GluI GCNGC 4 cut(s) 438, 614, 839, 1071
HaeIII GGCC 2 cut(s) 5, 138
HgaI GACGC 1 cut(s) 311
HinfI GANTC 5 cut(s) 57, 256, 487, 771, 1258
HphI GGTGA 3 cut(s) 44, 176, 862
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 7 cut(s) 474, 652, 770, 829, 1026, 1165, 1199
Hpy188III TCNNGA 8 cut(s) 182, 202, 260, 297, 422, 607, 1124, 1232
Hpy8I GTNNAC 1 cut(s) 16
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 3 cut(s) 80, 188, 613
HpyCH4V TGCA 6 cut(s) 125, 440, 500, 616, 999, 1270
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 434, 844
HpyF3I CTNAG 4 cut(s) 651, 1025, 1109, 1249
Kzo9I GATC 1 cut(s) 415
LmnI GCTCC 3 cut(s) 279, 961, 1021
Lsp1109I GCAGC 4 cut(s) 424, 600, 850, 1082
LweI GCATC 5 cut(s) 112, 568, 740, 917, 943
MabI ACCWGGT 1 cut(s) 284
MaeI CTAG 1 cut(s) 260
MaeIII GTNAC 4 cut(s) 313, 508, 675, 986
MalI GATC 1 cut(s) 417
MboI GATC 1 cut(s) 415
MboII GAAGA 5 cut(s) 553, 1112, 1203, 1247, 1267
MflI RGATCY 1 cut(s) 415
MhlI GDGCHC 2 cut(s) 140, 659
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 496, 780
MmeI TCCRAC 2 cut(s) 88, 1104
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 127
MroXI GAANNNNTTC 1 cut(s) 1239
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 644, 792, 915, 1170
MslI CAYNNNNRTG 1 cut(s) 710
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 286
MvaI CCWGG 1 cut(s) 286
MwoI GCNNNNNNNGC 3 cut(s) 34, 434, 844
NcoI CCATGG 1 cut(s) 6
NdeII GATC 1 cut(s) 415
NlaIV GGNNCC 2 cut(s) 138, 417
NmuCI GTSAC 1 cut(s) 675
NsiI ATGCAT 1 cut(s) 127
NspI RCATGY 3 cut(s) 129, 403, 896
PagI TCATGA 1 cut(s) 181
PaqCI CACCTGC 1 cut(s) 838
PciI ACATGT 1 cut(s) 399
PdmI GAANNNNTTC 1 cut(s) 1239
PfeI GAWTC 3 cut(s) 57, 256, 1258
PflFI GACNNNGTC 1 cut(s) 1207
PflMI CCANNNNNTGG 1 cut(s) 114
PkrI GCNGC 4 cut(s) 439, 615, 840, 1072
PleI GAGTC 2 cut(s) 495, 779
PpsI GAGTC 2 cut(s) 495, 779
PscI ACATGT 1 cut(s) 399
Psp6I CCWGG 1 cut(s) 284
PspGI CCWGG 1 cut(s) 284
PspN4I GGNNCC 2 cut(s) 138, 417
PspOMI GGGCCC 1 cut(s) 136
PspPI GGNCC 2 cut(s) 136, 137
PsuI RGATCY 1 cut(s) 415
PsyI GACNNNGTC 1 cut(s) 1207
RsaI GTAC 2 cut(s) 290, 1151
RsaNI GTAC 2 cut(s) 289, 1150
RseI CAYNNNNRTG 1 cut(s) 710
SaqAI TTAA 4 cut(s) 644, 792, 915, 1170
SatI GCNGC 4 cut(s) 438, 614, 839, 1071
Sau3AI GATC 1 cut(s) 415
Sau96I GGNCC 2 cut(s) 136, 137
SchI GAGTC 2 cut(s) 496, 780
ScrFI CCNGG 1 cut(s) 286
SduI GDGCHC 2 cut(s) 140, 659
SexAI ACCWGGT 1 cut(s) 284
SfaNI GCATC 5 cut(s) 112, 568, 740, 917, 943
SmiMI CAYNNNNRTG 1 cut(s) 710
SmlI CTYRAG 1 cut(s) 842
SmoI CTYRAG 1 cut(s) 842
SsiI CCGC 4 cut(s) 26, 91, 715, 1036
SspI AATATT 2 cut(s) 310, 1221
SspMI CTAG 1 cut(s) 260
StyD4I CCNGG 1 cut(s) 284
StyI CCWWGG 3 cut(s) 6, 108, 697
TaqI TCGA 7 cut(s) 201, 423, 621, 951, 966, 1050, 1233
TaqII GACCGA 1 cut(s) 762
TfiI GAWTC 3 cut(s) 57, 256, 1258
Tru1I TTAA 4 cut(s) 644, 792, 915, 1170
Tru9I TTAA 4 cut(s) 644, 792, 915, 1170
TscAI CASTG 1 cut(s) 1113
TseFI GTSAC 1 cut(s) 675
TseI GCWGC 4 cut(s) 437, 613, 838, 1070
Tsp45I GTSAC 1 cut(s) 675
TspGWI ACGGA 1 cut(s) 268
TspRI CASTG 1 cut(s) 1113
Tth111I GACNNNGTC 1 cut(s) 1207
Van91I CCANNNNNTGG 1 cut(s) 114
XagI CCTNNNNNAGG 1 cut(s) 607
XapI RAATTY 5 cut(s) 266, 520, 830, 968, 1127
XbaI TCTAGA 1 cut(s) 259
XceI RCATGY 3 cut(s) 129, 403, 896
XmnI GAANNNNTTC 1 cut(s) 1239
XspI CTAG 1 cut(s) 260
Zsp2I ATGCAT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.