Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000428

Physical Location & Seq

Genomic Coordinates Forward (+)

15732380 .. 15733982

Gene Structure 1603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g18893.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGACGAACTTTGTCAATGCAAAATCTATGACTTCTCTTAATTTAGAGTATGTCAGACTAAAGAATATCCGTAGAGGATTGGAGCAGCCTGCAGCACATACACGCCTTCTTCCCTCTTTGAAAAAGATGTCCTTCAAAACTGTGTACTTTGATCGTGATGCTCTCTCCTGCCTACTTGAGGAGTGCCCTGCGGTTGAGTGCTTGTCCTTGATTTCATGTTCTTTCGCAGGCTTGGAGATTAGTGTTCCAAGTACTAGTTTAAAATCCTTGGAAATCAAGCATTGCAAGGCATCATTAGCTCTCGTGCACCAAGCTGTGAATCTGGAATCCGTAATAGTCGTTTCACCAAAATCTCCTCTTGAGGCTGTGATCTTGAATGAATGCTGCAATCTGAAGTATATTAACGTTTATGGTAATTGGCGCATGAATATGTTTCATGTGGATGGATGCCATGATGTGAAGGGCACAATCAATGCTCCAAATCTGGATCATTTTAGCTACGAAGGCTACTTGAAGTCTAGATTTTCTTTGAAAGCTCCAAGGTTATCAATGGCTCGCATCATATTCTGGGACATTTGGGGTGGGGAAGCACCCAGCTTTGACCCATGGGAACATTTTCCTAAACTGACAGATTTTCTTAAAGAAGTTGGTAGCACCAAAGAGATGATCCTCCTTGTTCGTCATTTTAAGGCTCTCATCTTTCCGAAGGATTTTAGAAGGACCTTGTCAGCATCGATATTGCCTGAACTCGAAGTTCTGGAATACGCGACGGTTGTTCCAGCAACTCGGAGAGATAGGGAAGAGTTGATGCAGTCCTTGCAGTGGATGGCACCTTTAGCAACAGATATATCTCAATTAGAGTACAATGCAGAACTGGACATGTATGGAAAATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TAF TAF6_C

Protein Analysis

299

Amino Acids

33.97

Weight (kDa)

7.07

Isoelectric Point (pI)

46.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At5g56370	PF24758	6 - 115	3.4e-10	FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1	PF23622	29 - 112	7.8e-07	At1g61320/AtMIF1, LRR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000428)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica	MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica	Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis	pycom17g10120
rosa_chinensis	RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora	Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii	Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa	Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha	Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana	Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	829
AccII	CGCG	1 cut(s)	767
AciI	CCGC	1 cut(s)	191
AclI	AACGTT	1 cut(s)	405
AclWI	GGATC	2 cut(s)	495, 661
AcsI	RAATTY	1 cut(s)	890
AcuI	CTGAAG	1 cut(s)	413
AfaI	GTAC	3 cut(s)	146, 253, 863
AfiI	CCNNNNNNNGG	2 cut(s)	178, 822
AflIII	ACRYGT	1 cut(s)	879
AgsI	TTSAA	5 cut(s)	121, 136, 376, 514, 532
AhlI	ACTAGT	1 cut(s)	254
AluBI	AGCT	5 cut(s)	299, 314, 498, 536, 597
AluI	AGCT	5 cut(s)	299, 314, 498, 536, 597
Alw21I	GWGCWC	1 cut(s)	309
Alw44I	GTGCAC	1 cut(s)	305
AlwI	GGATC	2 cut(s)	495, 661
ApaLI	GTGCAC	1 cut(s)	305
ApeKI	GCWGC	3 cut(s)	85, 92, 384
ApoI	RAATTY	1 cut(s)	890
Asp700I	GAANNNNTTC	1 cut(s)	615
AspLEI	GCGC	1 cut(s)	423
AspS9I	GGNCC	1 cut(s)	720
AsuHPI	GGTGA	1 cut(s)	336
AvaII	GGWCC	1 cut(s)	720
BaeGI	GKGCMC	3 cut(s)	188, 309, 467
BanI	GGYRCC	1 cut(s)	829
BauI	CACGAG	1 cut(s)	302
Bbv12I	GWGCWC	1 cut(s)	309
BbvI	GCAGC	3 cut(s)	97, 104, 371
BccI	CCATC	2 cut(s)	437, 820
BcuI	ACTAGT	1 cut(s)	254
BfaI	CTAG	2 cut(s)	255, 519
BfmI	CTRYAG	1 cut(s)	90
BisI	GCNGC	3 cut(s)	86, 93, 385
BlsI	GCNGC	3 cut(s)	87, 94, 386
BmcAI	AGTACT	1 cut(s)	253
Bme18I	GGWCC	1 cut(s)	720
BmgT120I	GGNCC	1 cut(s)	720
BmiI	GGNNCC	1 cut(s)	831
BmsI	GCATC	6 cut(s)	148, 299, 437, 567, 740, 798
BpuEI	CTTGAG	2 cut(s)	197, 380
Bsa29I	ATCGAT	1 cut(s)	734
BsaJI	CCNNGG	3 cut(s)	267, 539, 605
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 822
Bse1I	ACTGG	1 cut(s)	879
Bse3DI	GCAATG	1 cut(s)	280
BseCI	ATCGAT	1 cut(s)	734
BseDI	CCNNGG	3 cut(s)	267, 539, 605
BseGI	GGATG	3 cut(s)	448, 452, 831
BseLI	CCNNNNNNNGG	2 cut(s)	178, 822
BseMI	GCAATG	1 cut(s)	280
BseNI	ACTGG	1 cut(s)	879
BseRI	GAGGAG	2 cut(s)	194, 345
BseSI	GKGCMC	3 cut(s)	188, 309, 467
BseXI	GCAGC	3 cut(s)	97, 104, 371
BseYI	CCCAGC	1 cut(s)	593
Bsh1236I	CGCG	1 cut(s)	767
BshNI	GGYRCC	1 cut(s)	829
BshVI	ATCGAT	1 cut(s)	734
BsiHKAI	GWGCWC	1 cut(s)	309
BslFI	GGGAC	1 cut(s)	584
BslI	CCNNNNNNNGG	2 cut(s)	178, 822
BsmFI	GGGAC	1 cut(s)	584
BsmI	GAATGC	1 cut(s)	386
Bsp1286I	GDGCHC	3 cut(s)	188, 309, 467
Bsp143I	GATC	4 cut(s)	151, 369, 487, 666
Bsp19I	CCATGG	1 cut(s)	605
BspACI	CCGC	1 cut(s)	191
BspDI	ATCGAT	1 cut(s)	734
BspFNI	CGCG	1 cut(s)	767
BspLI	GGNNCC	1 cut(s)	831
BspMAI	CTGCAG	1 cut(s)	94
BspPI	GGATC	2 cut(s)	495, 661
BspT107I	GGYRCC	1 cut(s)	829
BsrDI	GCAATG	1 cut(s)	280
BsrI	ACTGG	1 cut(s)	879
BssECI	CCNNGG	3 cut(s)	267, 539, 605
BssMI	GATC	4 cut(s)	151, 369, 487, 666
BssSI	CACGAG	1 cut(s)	302
BssT1I	CCWWGG	3 cut(s)	267, 539, 605
Bst2BI	CACGAG	1 cut(s)	302
Bst4CI	ACNGT	2 cut(s)	142, 772
Bst6I	CTCTTC	1 cut(s)	795
BstAPI	GCANNNNNTGC	1 cut(s)	817
BstC8I	GCNNGC	3 cut(s)	90, 229, 556
BstDSI	CCRYGG	1 cut(s)	605
BstENI	CCTNNNNNAGG	1 cut(s)	176
BstF5I	GGATG	3 cut(s)	448, 452, 831
BstFNI	CGCG	1 cut(s)	767
BstHHI	GCGC	1 cut(s)	423
BstKTI	GATC	4 cut(s)	154, 372, 490, 669
BstMBI	GATC	4 cut(s)	151, 369, 487, 666
BstMWI	GCNNNNNNNGC	4 cut(s)	296, 504, 817, 836
BstNSI	RCATGY	1 cut(s)	883
BstSFI	CTRYAG	1 cut(s)	90
BstSLI	GKGCMC	3 cut(s)	188, 309, 467
BstUI	CGCG	1 cut(s)	767
BstV1I	GCAGC	3 cut(s)	97, 104, 371
Bsu15I	ATCGAT	1 cut(s)	734
BsuTUI	ATCGAT	1 cut(s)	734
BtgI	CCRYGG	1 cut(s)	605
BtsCI	GGATG	3 cut(s)	448, 452, 831
BtsI	GCAGTG	1 cut(s)	827
BtsIMutI	CAGTG	1 cut(s)	827
Cac8I	GCNNGC	3 cut(s)	90, 229, 556
CfoI	GCGC	1 cut(s)	423
Cfr13I	GGNCC	1 cut(s)	720
ClaI	ATCGAT	1 cut(s)	734
Csp6I	GTAC	3 cut(s)	145, 252, 862
CviAII	CATG	6 cut(s)	216, 424, 437, 452, 606, 880
CviQI	GTAC	3 cut(s)	145, 252, 862
DpnI	GATC	4 cut(s)	153, 371, 489, 668
DpnII	GATC	4 cut(s)	151, 369, 487, 666
DraI	TTTAAA	1 cut(s)	261
Eam1104I	CTCTTC	1 cut(s)	795
EarI	CTCTTC	1 cut(s)	795
Eco130I	CCWWGG	3 cut(s)	267, 539, 605
Eco47I	GGWCC	1 cut(s)	720
Eco57I	CTGAAG	1 cut(s)	413
EcoNI	CCTNNNNNAGG	1 cut(s)	176
EcoO109I	RGGNCCY	1 cut(s)	720
EcoT14I	CCWWGG	3 cut(s)	267, 539, 605
ErhI	CCWWGG	3 cut(s)	267, 539, 605
FaeI	CATG	6 cut(s)	219, 427, 440, 455, 609, 883
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FaqI	GGGAC	1 cut(s)	584
FatI	CATG	6 cut(s)	215, 423, 436, 451, 605, 879
Fnu4HI	GCNGC	3 cut(s)	86, 93, 385
FokI	GGATG	3 cut(s)	455, 459, 838
Fsp4HI	GCNGC	3 cut(s)	86, 93, 385
FspBI	CTAG	2 cut(s)	255, 519
GlaI	GCGC	1 cut(s)	422
GluI	GCNGC	3 cut(s)	86, 93, 385
GsaI	CCCAGC	1 cut(s)	597
HhaI	GCGC	1 cut(s)	423
Hin1II	CATG	6 cut(s)	219, 427, 440, 455, 609, 883
Hin6I	GCGC	1 cut(s)	421
HinP1I	GCGC	1 cut(s)	421
HinfI	GANTC	2 cut(s)	319, 326
HphI	GGTGA	1 cut(s)	336
Hpy166II	GTNNAC	2 cut(s)	145, 307
Hpy188I	TCNGA	4 cut(s)	56, 393, 705, 789
Hpy188III	TCNNGA	7 cut(s)	155, 323, 359, 373, 485, 519, 758
Hpy8I	GTNNAC	2 cut(s)	145, 307
Hpy99I	CGWCG	1 cut(s)	772
HpyAV	CCTTC	6 cut(s)	116, 142, 454, 497, 700, 711
HpyCH4III	ACNGT	2 cut(s)	142, 772
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	8 cut(s)	20, 92, 285, 307, 387, 811, 820, 869
HpyF10VI	GCNNNNNNNGC	4 cut(s)	296, 504, 817, 836
HpySE526I	ACGT	1 cut(s)	405
Hsp92II	CATG	6 cut(s)	219, 427, 440, 455, 609, 883
HspAI	GCGC	1 cut(s)	421
Kzo9I	GATC	4 cut(s)	151, 369, 487, 666
LmnI	GCTCC	3 cut(s)	82, 481, 541
Lsp1109I	GCAGC	3 cut(s)	97, 104, 371
LweI	GCATC	6 cut(s)	148, 299, 437, 567, 740, 798
MaeI	CTAG	2 cut(s)	255, 519
MaeII	ACGT	1 cut(s)	405
MalI	GATC	4 cut(s)	153, 371, 489, 668
MboI	GATC	4 cut(s)	151, 369, 487, 666
MboII	GAAGA	2 cut(s)	101, 812
MhlI	GDGCHC	3 cut(s)	188, 309, 467
MluCI	AATT	4 cut(s)	40, 415, 854, 890
MnlI	CCTC	6 cut(s)	68, 124, 172, 355, 366, 680
MroXI	GAANNNNTTC	1 cut(s)	615
MseI	TTAA	5 cut(s)	39, 260, 402, 639, 687
MslI	CAYNNNNRTG	2 cut(s)	428, 441
Mva1269I	GAATGC	1 cut(s)	386
MvnI	CGCG	1 cut(s)	767
MwoI	GCNNNNNNNGC	4 cut(s)	296, 504, 817, 836
NcoI	CCATGG	1 cut(s)	605
NdeII	GATC	4 cut(s)	151, 369, 487, 666
NlaIII	CATG	6 cut(s)	219, 427, 440, 455, 609, 883
NlaIV	GGNNCC	1 cut(s)	831
NspI	RCATGY	1 cut(s)	883
PciI	ACATGT	1 cut(s)	879
PctI	GAATGC	1 cut(s)	386
PdmI	GAANNNNTTC	1 cut(s)	615
PfeI	GAWTC	2 cut(s)	319, 326
PflFI	GACNNNGTC	1 cut(s)	724
PkrI	GCNGC	3 cut(s)	87, 94, 386
PpuMI	RGGWCCY	1 cut(s)	720
PscI	ACATGT	1 cut(s)	879
Psp1406I	AACGTT	1 cut(s)	405
Psp5II	RGGWCCY	1 cut(s)	720
PspFI	CCCAGC	1 cut(s)	593
PspN4I	GGNNCC	1 cut(s)	831
PspPI	GGNCC	1 cut(s)	720
PspPPI	RGGWCCY	1 cut(s)	720
PstI	CTGCAG	1 cut(s)	94
PsyI	GACNNNGTC	1 cut(s)	724
RsaI	GTAC	3 cut(s)	146, 253, 863
RsaNI	GTAC	3 cut(s)	145, 252, 862
RseI	CAYNNNNRTG	2 cut(s)	428, 441
SaqAI	TTAA	5 cut(s)	39, 260, 402, 639, 687
SatI	GCNGC	3 cut(s)	86, 93, 385
Sau3AI	GATC	4 cut(s)	151, 369, 487, 666
Sau96I	GGNCC	1 cut(s)	720
ScaI	AGTACT	1 cut(s)	253
SduI	GDGCHC	3 cut(s)	188, 309, 467
SetI	ASST	9 cut(s)	301, 316, 408, 500, 538, 545, 599, 725, 835
SfaNI	GCATC	6 cut(s)	148, 299, 437, 567, 740, 798
SfcI	CTRYAG	1 cut(s)	90
SinI	GGWCC	1 cut(s)	720
SmiMI	CAYNNNNRTG	2 cut(s)	428, 441
SmlI	CTYRAG	2 cut(s)	176, 359
SmoI	CTYRAG	2 cut(s)	176, 359
SpeI	ACTAGT	1 cut(s)	254
Sse9I	AATT	4 cut(s)	40, 415, 854, 890
SsiI	CCGC	1 cut(s)	191
SspMI	CTAG	2 cut(s)	255, 519
StyI	CCWWGG	3 cut(s)	267, 539, 605
TaaI	ACNGT	2 cut(s)	142, 772
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	2 cut(s)	734, 750
TasI	AATT	4 cut(s)	40, 415, 854, 890
TatI	WGTACW	3 cut(s)	144, 251, 861
TfiI	GAWTC	2 cut(s)	319, 326
Tru1I	TTAA	5 cut(s)	39, 260, 402, 639, 687
Tru9I	TTAA	5 cut(s)	39, 260, 402, 639, 687
TscAI	CASTG	1 cut(s)	827
TseI	GCWGC	3 cut(s)	85, 92, 384
TspDTI	ATGAA	4 cut(s)	204, 393, 425, 440
TspGWI	ACGGA	2 cut(s)	59, 319
TspRI	CASTG	1 cut(s)	827
Tth111I	GACNNNGTC	1 cut(s)	724
VneI	GTGCAC	1 cut(s)	305
VpaK11BI	GGWCC	1 cut(s)	720
XagI	CCTNNNNNAGG	1 cut(s)	176
XapI	RAATTY	1 cut(s)	890
XbaI	TCTAGA	1 cut(s)	518
XceI	RCATGY	1 cut(s)	883
XmnI	GAANNNNTTC	1 cut(s)	615
XspI	CTAG	2 cut(s)	255, 519
ZrmI	AGTACT	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.