RchiOBHm_Chr6g0265481

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000428
Physical Location & Seq
Reverse (-)
21340456 .. 21349330
8875 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23809

Sequence Viewer

Length: 588 bp
ATGAATAGCTCAGAGCAAGACAAAGCCAAGGAAGATCATAACGAAAATGTCATGGCTAATAGCACTTTACTGCCTCACTTACCTGACCTTATTATGCACCAAATCATCTTACGACTTCCTACCAAACCTGCCATTCGCATGAGTTGTCTTTCCAAGCAATGGGAAGGTGTATGGTCTGCGCTCCGCATATTAGATTTTGACGAGCGCAATCAGCCACATGATGATAATGATGACGACAACAACTACAAACATGTAAAGTTCCTCAACATCTTGGCAAGGTATTTGGAATTCCGTCAGAAGGACAACCAGCAACCTCCCTTGGATAAATTCAGGCTTTCGATGAGATATCTAGATGCAGATGAAGATGCTATCATAGGAAAGTTATTGAGTAATTCATTTGAGAGAAATGTCAAGGACTTAGATATCAGCCTTAGAAGTAAACATCAGGAGGTTGAAACCTACTATTGCTTACCCCGGACGGCCATTATTAATGCAAAATCTGTGACTATTCTAAATTTGGAGCACCTGAGGATAAAGGACATTGACAGTGTTGGACCTGAGCCTATGTTTCCCTCTTTGAAAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box LRR_2

Protein Analysis

195

Amino Acids

22.77

Weight (kDa)

5.8

Isoelectric Point (pI)

49.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 24 - 62 3e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 136
AccB7I CCANNNNNTGG 1 cut(s) 159
AciI CCGC 1 cut(s) 184
AcoI YGGCCR 1 cut(s) 480
AcsI RAATTY 3 cut(s) 287, 326, 514
AfiI CCNNNNNNNGG 2 cut(s) 159, 298
AflIII ACRYGT 1 cut(s) 250
AgsI TTSAA 2 cut(s) 455, 580
AluBI AGCT 1 cut(s) 9
AluI AGCT 1 cut(s) 9
Alw21I GWGCWC 1 cut(s) 525
AoxI GGCC 1 cut(s) 480
ApoI RAATTY 3 cut(s) 287, 326, 514
AseI ATTAAT 1 cut(s) 489
AspLEI GCGC 2 cut(s) 181, 207
AspS9I GGNCC 1 cut(s) 554
AsuC2I CCSGG 1 cut(s) 475
AvaII GGWCC 1 cut(s) 554
AxyI CCTNAGG 1 cut(s) 527
Bbv12I GWGCWC 1 cut(s) 525
BceAI ACGGC 1 cut(s) 495
BcnI CCSGG 1 cut(s) 475
BfaI CTAG 1 cut(s) 350
BfuAI ACCTGC 1 cut(s) 136
Bme1390I CCNGG 1 cut(s) 475
Bme18I GGWCC 1 cut(s) 554
BmgT120I GGNCC 1 cut(s) 554
BmrFI CCNGG 1 cut(s) 475
BmsI GCATC 2 cut(s) 343, 355
Bpu10I CCTNAGC 1 cut(s) 558
BpuMI CCSGG 1 cut(s) 475
BsaJI CCNNGG 3 cut(s) 27, 318, 473
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 298
Bse21I CCTNAGG 1 cut(s) 527
Bse3DI GCAATG 1 cut(s) 164
BseDI CCNNGG 3 cut(s) 27, 318, 473
BseLI CCNNNNNNNGG 2 cut(s) 159, 298
BseMI GCAATG 1 cut(s) 164
BseMII CTCAG 3 cut(s) 24, 518, 549
BshFI GGCC 1 cut(s) 482
BsiHKAI GWGCWC 1 cut(s) 525
BsiSI CCGG 1 cut(s) 475
BslI CCNNNNNNNGG 2 cut(s) 159, 298
BsnI GGCC 1 cut(s) 482
Bsp1286I GDGCHC 1 cut(s) 525
Bsp143I GATC 1 cut(s) 34
BspACI CCGC 1 cut(s) 184
BspANI GGCC 1 cut(s) 482
BspCNI CTCAG 3 cut(s) 23, 519, 550
BspMI ACCTGC 1 cut(s) 136
BsrDI GCAATG 1 cut(s) 164
BssECI CCNNGG 3 cut(s) 27, 318, 473
BssMI GATC 1 cut(s) 34
BssT1I CCWWGG 2 cut(s) 27, 318
Bst4CI ACNGT 1 cut(s) 548
BstDEI CTNAG 6 cut(s) 10, 418, 431, 527, 558, 585
BstHHI GCGC 2 cut(s) 181, 207
BstKTI GATC 1 cut(s) 37
BstMBI GATC 1 cut(s) 34
BstMWI GCNNNNNNNGC 1 cut(s) 211
BstNSI RCATGY 1 cut(s) 254
BstSCI CCNGG 1 cut(s) 473
Bsu36I CCTNAGG 1 cut(s) 527
BsuRI GGCC 1 cut(s) 482
BtsIMutI CAGTG 1 cut(s) 553
BveI ACCTGC 1 cut(s) 136
CfoI GCGC 2 cut(s) 181, 207
Cfr13I GGNCC 1 cut(s) 554
CviAII CATG 4 cut(s) 52, 139, 218, 251
CviJI RGCY 8 cut(s) 9, 26, 56, 214, 334, 429, 482, 562
CviKI_1 RGCY 8 cut(s) 9, 26, 56, 214, 334, 429, 482, 562
DdeI CTNAG 6 cut(s) 10, 418, 431, 527, 558, 585
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
EaeI YGGCCR 1 cut(s) 480
Eco130I CCWWGG 2 cut(s) 27, 318
Eco32I GATATC 2 cut(s) 347, 424
Eco47I GGWCC 1 cut(s) 554
Eco81I CCTNAGG 1 cut(s) 527
EcoRI GAATTC 1 cut(s) 287
EcoRV GATATC 2 cut(s) 347, 424
EcoT14I CCWWGG 2 cut(s) 27, 318
ErhI CCWWGG 2 cut(s) 27, 318
FaeI CATG 4 cut(s) 55, 142, 221, 254
FatI CATG 4 cut(s) 51, 138, 217, 250
FspBI CTAG 1 cut(s) 350
GlaI GCGC 2 cut(s) 180, 206
HaeIII GGCC 1 cut(s) 482
HapII CCGG 1 cut(s) 475
HhaI GCGC 2 cut(s) 181, 207
Hin1II CATG 4 cut(s) 55, 142, 221, 254
Hin6I GCGC 2 cut(s) 179, 205
HinP1I GCGC 2 cut(s) 179, 205
HpaII CCGG 1 cut(s) 475
Hpy166II GTNNAC 1 cut(s) 440
Hpy188I TCNGA 2 cut(s) 13, 297
Hpy188III TCNNGA 2 cut(s) 350, 446
Hpy8I GTNNAC 1 cut(s) 440
HpyAV CCTTC 2 cut(s) 158, 292
HpyCH4III ACNGT 1 cut(s) 548
HpyCH4V TGCA 3 cut(s) 97, 356, 494
HpyF10VI GCNNNNNNNGC 1 cut(s) 211
HpyF3I CTNAG 6 cut(s) 10, 418, 431, 527, 558, 585
Hsp92II CATG 4 cut(s) 55, 142, 221, 254
HspAI GCGC 2 cut(s) 179, 205
Kzo9I GATC 1 cut(s) 34
LmnI GCTCC 2 cut(s) 186, 520
LpnPI CCDG 8 cut(s) 96, 141, 316, 320, 431, 488, 539, 570
LweI GCATC 2 cut(s) 343, 355
MaeI CTAG 1 cut(s) 350
MaeIII GTNAC 1 cut(s) 502
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MboII GAAGA 2 cut(s) 44, 374
MhlI GDGCHC 1 cut(s) 525
MluCI AATT 4 cut(s) 287, 326, 391, 514
MmeI TCCRAC 1 cut(s) 532
MnlI CCTC 6 cut(s) 84, 272, 324, 442, 522, 583
MseI TTAA 1 cut(s) 489
MslI CAYNNNNRTG 1 cut(s) 137
MspI CCGG 1 cut(s) 475
MspR9I CCNGG 1 cut(s) 475
MwoI GCNNNNNNNGC 1 cut(s) 211
NciI CCSGG 1 cut(s) 475
NdeII GATC 1 cut(s) 34
NlaIII CATG 4 cut(s) 55, 142, 221, 254
NmuCI GTSAC 1 cut(s) 502
NspI RCATGY 1 cut(s) 254
PciI ACATGT 1 cut(s) 250
PflMI CCANNNNNTGG 1 cut(s) 159
PscI ACATGT 1 cut(s) 250
PshBI ATTAAT 1 cut(s) 489
PspPI GGNCC 1 cut(s) 554
RseI CAYNNNNRTG 1 cut(s) 137
SaqAI TTAA 1 cut(s) 489
Sau3AI GATC 1 cut(s) 34
Sau96I GGNCC 1 cut(s) 554
ScrFI CCNGG 1 cut(s) 475
SduI GDGCHC 1 cut(s) 525
SfaNI GCATC 2 cut(s) 343, 355
SinI GGWCC 1 cut(s) 554
SmiMI CAYNNNNRTG 1 cut(s) 137
Sse9I AATT 4 cut(s) 287, 326, 391, 514
SsiI CCGC 1 cut(s) 184
SspMI CTAG 1 cut(s) 350
StyD4I CCNGG 1 cut(s) 473
StyI CCWWGG 2 cut(s) 27, 318
TaaI ACNGT 1 cut(s) 548
TaqI TCGA 1 cut(s) 338
TasI AATT 4 cut(s) 287, 326, 391, 514
Tru1I TTAA 1 cut(s) 489
Tru9I TTAA 1 cut(s) 489
TscAI CASTG 1 cut(s) 553
TseFI GTSAC 1 cut(s) 502
Tsp45I GTSAC 1 cut(s) 502
TspDTI ATGAA 3 cut(s) 17, 375, 384
TspGWI ACGGA 1 cut(s) 281
TspRI CASTG 1 cut(s) 553
Van91I CCANNNNNTGG 1 cut(s) 159
VpaK11BI GGWCC 1 cut(s) 554
VspI ATTAAT 1 cut(s) 489
XapI RAATTY 3 cut(s) 287, 326, 514
XbaI TCTAGA 1 cut(s) 349
XceI RCATGY 1 cut(s) 254
XspI CTAG 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.