FvH4_1g21942

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000428
Physical Location & Seq
Reverse (-)
13870292 .. 13870944
653 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g21942.t1

Sequence Viewer

Length: 552 bp
ATGTATTGCAAGTGCAAGTATATTAAGGTTGTAGCTGAGAATCTTGAATCTTTTATATTAACCTCAGAATTTGCTCAACTTGGTTCCTTCAGCTTGCATAGAGAATGCGTCAAGTTGAAATATATCAGCGTTTCTGCTCAGCTTTCAGATACTTGCTTTGCAATGCCTGGAACAAGTCGACATAATATGAAGGCACTATTGACATTCCAAATCTCAGAGTTTTTAGCTACGATGGTTATTTGCTGCATGCCTAATGATGTAATCTCTTTGAAAGCTCGAAATCCATTGTCTGCACGTCTCAATCTTGATTGGGATGATGAACACGTTGCTCTCACATATCCAGAAATTTTCAGGAAGGCATTCTCACCACCGTTACTGAATCTCAAGTATCTTCCAGTCTCGATTGTACGTCTTCATTGTCCGCAAACACTTCCCAGAATTTCTGCCTTCACAGACTCTTTGTGTTGGATGGCACCATATGCATTGATTGAATTATGTTTCTGGGACTATGATGATGAGCCTGAACCTGAATCTTCAGGGGAAGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

20.9

Weight (kDa)

5.1

Isoelectric Point (pI)

51.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 472
AccI GTMKAC 1 cut(s) 178
AciI CCGC 1 cut(s) 422
AcsI RAATTY 3 cut(s) 68, 345, 438
AcuI CTGAAG 2 cut(s) 73, 519
AfaI GTAC 1 cut(s) 408
AflIII ACRYGT 1 cut(s) 322
AgsI TTSAA 4 cut(s) 47, 118, 271, 491
AjiI CACGTC 1 cut(s) 296
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 5 cut(s) 35, 93, 142, 227, 275
AluI AGCT 5 cut(s) 35, 93, 142, 227, 275
Alw26I GTCTC 2 cut(s) 302, 403
ApeKI GCWGC 1 cut(s) 243
ApoI RAATTY 3 cut(s) 68, 345, 438
Asp700I GAANNNNTTC 1 cut(s) 359
AsuHPI GGTGA 1 cut(s) 357
BanI GGYRCC 1 cut(s) 472
BbsI GAAGAC 1 cut(s) 404
BbvI GCAGC 1 cut(s) 230
BccI CCATC 2 cut(s) 226, 463
BciT130I CCWGG 1 cut(s) 168
BcoDI GTCTC 2 cut(s) 302, 403
BisI GCNGC 1 cut(s) 244
BlpI GCTNAGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 245
Bme1390I CCNGG 1 cut(s) 168
BmgBI CACGTC 1 cut(s) 296
BmiI GGNNCC 2 cut(s) 85, 474
BmrFI CCNGG 1 cut(s) 168
BpiI GAAGAC 1 cut(s) 404
Bpu1102I GCTNAGC 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 368
Bse1I ACTGG 1 cut(s) 395
Bse3DI GCAATG 1 cut(s) 168
BseBI CCWGG 1 cut(s) 168
BseGI GGATG 2 cut(s) 319, 474
BseMI GCAATG 1 cut(s) 168
BseMII CTCAG 4 cut(s) 27, 78, 152, 228
BseNI ACTGG 1 cut(s) 395
BseXI GCAGC 1 cut(s) 230
BsgI GTGCAG 1 cut(s) 276
BshNI GGYRCC 1 cut(s) 472
BslFI GGGAC 1 cut(s) 518
BsmAI GTCTC 2 cut(s) 302, 403
BsmBI CGTCTC 1 cut(s) 302
BsmFI GGGAC 1 cut(s) 518
BsmI GAATGC 2 cut(s) 110, 359
Bsp1720I GCTNAGC 1 cut(s) 138
BspACI CCGC 1 cut(s) 422
BspCNI CTCAG 4 cut(s) 28, 77, 151, 227
BspLI GGNNCC 2 cut(s) 85, 474
BspT107I GGYRCC 1 cut(s) 472
BsrDI GCAATG 1 cut(s) 168
BsrI ACTGG 1 cut(s) 395
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 372
BstAPI GCANNNNNTGC 1 cut(s) 479
BstC8I GCNNGC 2 cut(s) 95, 248
BstDEI CTNAG 4 cut(s) 36, 64, 138, 214
BstF5I GGATG 2 cut(s) 319, 474
BstMAI GTCTC 2 cut(s) 302, 403
BstMWI GCNNNNNNNGC 1 cut(s) 479
BstNI CCWGG 1 cut(s) 168
BstNSI RCATGY 1 cut(s) 250
BstSCI CCNGG 1 cut(s) 166
BstV1I GCAGC 1 cut(s) 230
BstV2I GAAGAC 1 cut(s) 404
BtrI CACGTC 1 cut(s) 296
BtsCI GGATG 2 cut(s) 319, 474
Cac8I GCNNGC 2 cut(s) 95, 248
CseI GACGC 1 cut(s) 97
Csp6I GTAC 1 cut(s) 407
CviAII CATG 1 cut(s) 247
CviJI RGCY 6 cut(s) 35, 93, 142, 227, 275, 520
CviKI_1 RGCY 6 cut(s) 35, 93, 142, 227, 275, 520
CviQI GTAC 1 cut(s) 407
DdeI CTNAG 4 cut(s) 36, 64, 138, 214
Eco57I CTGAAG 2 cut(s) 73, 519
EcoRII CCWGG 1 cut(s) 166
EcoT22I ATGCAT 1 cut(s) 484
Esp3I CGTCTC 1 cut(s) 302
FaeI CATG 1 cut(s) 250
FaqI GGGAC 1 cut(s) 518
FatI CATG 1 cut(s) 246
FauNDI CATATG 1 cut(s) 478
FblI GTMKAC 1 cut(s) 178
Fnu4HI GCNGC 1 cut(s) 244
FokI GGATG 2 cut(s) 326, 481
Fsp4HI GCNGC 1 cut(s) 244
GluI GCNGC 1 cut(s) 244
HgaI GACGC 1 cut(s) 97
Hin1II CATG 1 cut(s) 250
HincII GTYRAC 1 cut(s) 179
HindII GTYRAC 1 cut(s) 179
HinfI GANTC 5 cut(s) 40, 47, 379, 455, 530
HphI GGTGA 1 cut(s) 357
Hpy166II GTNNAC 1 cut(s) 179
Hpy188I TCNGA 3 cut(s) 67, 148, 217
Hpy188III TCNNGA 5 cut(s) 44, 305, 341, 352, 400
Hpy8I GTNNAC 1 cut(s) 179
HpyAV CCTTC 4 cut(s) 97, 184, 349, 457
HpyCH4III ACNGT 1 cut(s) 372
HpyCH4IV ACGT 3 cut(s) 295, 324, 409
HpyCH4V TGCA 7 cut(s) 9, 15, 97, 161, 246, 293, 482
HpyF10VI GCNNNNNNNGC 1 cut(s) 479
HpyF3I CTNAG 4 cut(s) 36, 64, 138, 214
HpySE526I ACGT 3 cut(s) 295, 324, 409
Hsp92II CATG 1 cut(s) 250
Lsp1109I GCAGC 1 cut(s) 230
MaeII ACGT 3 cut(s) 295, 324, 409
MaeIII GTNAC 1 cut(s) 372
MboII GAAGA 3 cut(s) 383, 404, 525
MluCI AATT 4 cut(s) 68, 345, 438, 491
MlyI GAGTC 1 cut(s) 449
MmeI TCCRAC 1 cut(s) 446
MnlI CCTC 1 cut(s) 73
Mph1103I ATGCAT 1 cut(s) 484
MroXI GAANNNNTTC 1 cut(s) 359
MseI TTAA 2 cut(s) 24, 59
MspR9I CCNGG 1 cut(s) 168
Mva1269I GAATGC 2 cut(s) 110, 359
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 1 cut(s) 479
NdeI CATATG 1 cut(s) 478
NlaIII CATG 1 cut(s) 250
NlaIV GGNNCC 2 cut(s) 85, 474
NsiI ATGCAT 1 cut(s) 484
NspI RCATGY 1 cut(s) 250
PaeI GCATGC 1 cut(s) 250
PctI GAATGC 2 cut(s) 110, 359
PdmI GAANNNNTTC 1 cut(s) 359
PfeI GAWTC 4 cut(s) 40, 47, 379, 530
PkrI GCNGC 1 cut(s) 245
PleI GAGTC 1 cut(s) 449
PpsI GAGTC 1 cut(s) 449
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 2 cut(s) 85, 474
RsaI GTAC 1 cut(s) 408
RsaNI GTAC 1 cut(s) 407
SalI GTCGAC 1 cut(s) 177
SaqAI TTAA 2 cut(s) 24, 59
SatI GCNGC 1 cut(s) 244
SchI GAGTC 1 cut(s) 449
ScrFI CCNGG 1 cut(s) 168
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
SphI GCATGC 1 cut(s) 250
Sse9I AATT 4 cut(s) 68, 345, 438, 491
SsiI CCGC 1 cut(s) 422
StyD4I CCNGG 1 cut(s) 166
TaaI ACNGT 1 cut(s) 372
TaiI ACGT 3 cut(s) 298, 327, 412
TaqI TCGA 3 cut(s) 178, 277, 401
TasI AATT 4 cut(s) 68, 345, 438, 491
TfiI GAWTC 4 cut(s) 40, 47, 379, 530
Tru1I TTAA 2 cut(s) 24, 59
Tru9I TTAA 2 cut(s) 24, 59
TseI GCWGC 1 cut(s) 243
TspDTI ATGAA 3 cut(s) 203, 333, 404
XapI RAATTY 3 cut(s) 68, 345, 438
XceI RCATGY 1 cut(s) 250
XmiI GTMKAC 1 cut(s) 178
XmnI GAANNNNTTC 1 cut(s) 359
Zsp2I ATGCAT 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.