RchiOBHm_Chr6g0257771

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000428
Physical Location & Seq
Forward (+)
13124862 .. 13126257
1396 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23118

Sequence Viewer

Length: 1251 bp
ATGGCTGTGGACACAGTATTAAGCCGGCCTCAGTTACCTGACCACATTATCCACCAAATCATCCAACTCCTTCCTACCAAATCTGCTGTCCGCATGAGCTCTCTTTCCAAGCAATTTGAAGCTGCATGGTACACCCAACCTGTACTAGACTTCGATGAAGGCAAGCCACGCGATGATACAACTGACAGCAACCTTCAACACATAAAGTTCATCAACATCTTGGATAGGTATTTGGACTACTTCCGTAATGATGAGAAAATCAAGCAGCAACTCTTAGATAAATTCAGGCTTCGCATCACTACAAACTTCTCAGTTAGTGAGTCTACTATGGTAGATGAGTTATTGAGTCTTGCAGTTCGAAGAAACGTCAAAGAGTTGGACATTAGCATTGGAGGTAAACATGCAGCCTTATACTGTTTAACCCCGAAGAAGCCACTCAATTTGGCGAAGTCTATAACTACCTTAAGTTTGGAGCATGTGACAATTAATGAAGATGAATCTAATCCTCATCTAAGCTTCCCGTCCTTGAAAACAATGTCGTTAAAAACTCTGCGATTCAGTCACTCCTTGATATCTAGGTGCCCTTCCATCGAGACTTTGTCAGTATCAACCAGTTCTATGTGTGATGGCTCGTCAACATTCGTAGTTTCAAATTCCAATCTCAAATCCTTGGACATCACAAACTGCGATTTTTTTCAATTAGAACTGAGAACTACGAATCTAGAATCTTTTACCTTTGTTTCGGAGGATTACATTAGGCTCATCAGTTTGTCCAAGTGCAGAAACTTGAAATCTTTAAACATCCTCGCACAAAAACTGCACTACCTTTATATATCTGGATGCGGACATTCTGTGAAGGCCACAATCGATAGTTCCAGTCTAGAGTATGTTCAGTTTACTGGTTTTTTGAAGTACAAGCTTTCCATAAAAGCTCTAAATTTGTCAAGGGCAAGAATTACTCTTTGTCACGAAGAGCAGAGCTTCAACGAGCCATGGGAACATTTTTCTTCACTGAGAGATTTTCTTGAAAGTTTTGCTTCCTGCTACCAAGAAATAATCCTACGTGTTGATCATGCTGAGATGGTGCGGGCTCTCATCTTTCCAGAAAATTTCAGGAAGACCGTCTCTCCACCATTGCCTATTCTTAAGCATTTTCGGGTTCGCATCACTTCTCCGATGTTGGCGCGAAATTCTGACTTGATGGACTCATTGACTTGGATAGCACCTTCTGCAGAGATTCAAAGAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

416

Amino Acids

47.6

Weight (kDa)

8.05

Isoelectric Point (pI)

43.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 11 - 46 5.3e-06 F-box domain
LRR_At5g56370 PF24758 111 - 280 2e-09 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 579
AccI GTMKAC 1 cut(s) 323
AccII CGCG 2 cut(s) 171, 1186
AciI CCGC 3 cut(s) 91, 843, 1087
AcsI RAATTY 5 cut(s) 281, 652, 937, 1108, 1189
AfaI GTAC 3 cut(s) 131, 144, 914
AflII CTTAAG 2 cut(s) 463, 1145
AflIII ACRYGT 1 cut(s) 1063
AluBI AGCT 6 cut(s) 99, 122, 516, 919, 932, 981
AluI AGCT 6 cut(s) 99, 122, 516, 919, 932, 981
Alw21I GWGCWC 1 cut(s) 101
Alw26I GTCTC 2 cut(s) 587, 1129
AoxI GGCC 2 cut(s) 26, 858
ApeKI GCWGC 3 cut(s) 122, 265, 404
ApoI RAATTY 5 cut(s) 281, 652, 937, 1108, 1189
ArsI GACNNNNNNTTYG 2 cut(s) 72, 104
AseI ATTAAT 1 cut(s) 486
AspLEI GCGC 1 cut(s) 1186
AsuII TTCGAA 1 cut(s) 358
BaeGI GKGCMC 1 cut(s) 584
BanI GGYRCC 1 cut(s) 579
BanII GRGCYC 2 cut(s) 101, 1093
BbsI GAAGAC 1 cut(s) 1124
Bbv12I GWGCWC 1 cut(s) 101
BbvI GCAGC 3 cut(s) 109, 277, 416
BccI CCATC 4 cut(s) 596, 620, 1075, 1195
BclI TGATCA 1 cut(s) 1069
BcoDI GTCTC 2 cut(s) 587, 1129
BfaI CTAG 4 cut(s) 146, 576, 722, 881
BfmI CTRYAG 1 cut(s) 1230
BfrI CTTAAG 2 cut(s) 463, 1145
BisI GCNGC 3 cut(s) 123, 266, 405
BlsI GCNGC 3 cut(s) 124, 267, 406
BmiI GGNNCC 1 cut(s) 581
BmsI GCATC 3 cut(s) 303, 830, 1173
BpiI GAAGAC 1 cut(s) 1124
Bpu14I TTCGAA 1 cut(s) 358
Bsa29I ATCGAT 1 cut(s) 867
BsaAI YACGTR 1 cut(s) 1064
BsaJI CCNNGG 2 cut(s) 669, 992
BsaXI ACNNNNNCTCC 2 cut(s) 1111, 1141
Bse118I RCCGGY 1 cut(s) 24
Bse1I ACTGG 3 cut(s) 612, 876, 904
Bse3DI GCAATG 1 cut(s) 1133
BseCI ATCGAT 1 cut(s) 867
BseDI CCNNGG 2 cut(s) 669, 992
BseGI GGATG 3 cut(s) 60, 801, 845
BseMI GCAATG 1 cut(s) 1133
BseMII CTCAG 5 cut(s) 44, 324, 698, 1004, 1068
BseNI ACTGG 3 cut(s) 612, 876, 904
BseSI GKGCMC 1 cut(s) 584
BseXI GCAGC 3 cut(s) 109, 277, 416
BsgI GTGCAG 2 cut(s) 799, 803
Bsh1236I CGCG 2 cut(s) 171, 1186
BshFI GGCC 2 cut(s) 28, 860
BshNI GGYRCC 1 cut(s) 579
BshVI ATCGAT 1 cut(s) 867
BsiHKAI GWGCWC 1 cut(s) 101
BsiSI CCGG 1 cut(s) 25
BsmAI GTCTC 2 cut(s) 587, 1129
BsmBI CGTCTC 1 cut(s) 1129
BsnI GGCC 2 cut(s) 28, 860
Bsp119I TTCGAA 1 cut(s) 358
Bsp1286I GDGCHC 3 cut(s) 101, 584, 1093
Bsp143I GATC 1 cut(s) 1069
Bsp19I CCATGG 1 cut(s) 992
BspACI CCGC 3 cut(s) 91, 843, 1087
BspANI GGCC 2 cut(s) 28, 860
BspCNI CTCAG 5 cut(s) 43, 323, 699, 1005, 1069
BspDI ATCGAT 1 cut(s) 867
BspFNI CGCG 2 cut(s) 171, 1186
BspLI GGNNCC 1 cut(s) 581
BspMAI CTGCAG 1 cut(s) 1234
BspQI GCTCTTC 1 cut(s) 966
BspT104I TTCGAA 1 cut(s) 358
BspT107I GGYRCC 1 cut(s) 579
BspTI CTTAAG 2 cut(s) 463, 1145
BsrDI GCAATG 1 cut(s) 1133
BsrFI RCCGGY 1 cut(s) 24
BsrI ACTGG 3 cut(s) 612, 876, 904
BssAI RCCGGY 1 cut(s) 24
BssECI CCNNGG 2 cut(s) 669, 992
BssMI GATC 1 cut(s) 1069
BssT1I CCWWGG 2 cut(s) 669, 992
Bst4CI ACNGT 3 cut(s) 16, 416, 1123
Bst6I CTCTTC 1 cut(s) 966
BstAFI CTTAAG 2 cut(s) 463, 1145
BstAPI GCANNNNNTGC 1 cut(s) 1229
BstBAI YACGTR 1 cut(s) 1064
BstBI TTCGAA 1 cut(s) 358
BstC8I GCNNGC 3 cut(s) 26, 164, 1089
BstDEI CTNAG 7 cut(s) 30, 274, 310, 512, 707, 1013, 1077
BstDSI CCRYGG 1 cut(s) 992
BstF5I GGATG 3 cut(s) 60, 801, 845
BstFNI CGCG 2 cut(s) 171, 1186
BstHHI GCGC 1 cut(s) 1186
BstKTI GATC 1 cut(s) 1072
BstMAI GTCTC 2 cut(s) 587, 1129
BstMBI GATC 1 cut(s) 1069
BstMWI GCNNNNNNNGC 2 cut(s) 168, 1229
BstNSI RCATGY 2 cut(s) 404, 479
BstSFI CTRYAG 1 cut(s) 1230
BstSLI GKGCMC 1 cut(s) 584
BstUI CGCG 2 cut(s) 171, 1186
BstV1I GCAGC 3 cut(s) 109, 277, 416
BstV2I GAAGAC 1 cut(s) 1124
Bsu15I ATCGAT 1 cut(s) 867
BsuRI GGCC 2 cut(s) 28, 860
BsuTUI ATCGAT 1 cut(s) 867
BtgI CCRYGG 1 cut(s) 992
BtgZI GCGATG 1 cut(s) 186
BtsCI GGATG 3 cut(s) 60, 801, 845
BtsIMutI CAGTG 1 cut(s) 1010
Cac8I GCNNGC 3 cut(s) 26, 164, 1089
CfoI GCGC 1 cut(s) 1186
Cfr10I RCCGGY 1 cut(s) 24
ClaI ATCGAT 1 cut(s) 867
Csp6I GTAC 3 cut(s) 130, 143, 913
CspCI CAANNNNNGTGG 2 cut(s) 423, 458
CviAII CATG 6 cut(s) 94, 126, 401, 476, 993, 1073
CviQI GTAC 3 cut(s) 130, 143, 913
DdeI CTNAG 7 cut(s) 30, 274, 310, 512, 707, 1013, 1077
DpnI GATC 1 cut(s) 1071
DpnII GATC 1 cut(s) 1069
DraI TTTAAA 1 cut(s) 798
Eam1104I CTCTTC 1 cut(s) 966
EarI CTCTTC 1 cut(s) 966
Ecl136II GAGCTC 1 cut(s) 99
Eco130I CCWWGG 2 cut(s) 669, 992
Eco24I GRGCYC 2 cut(s) 101, 1093
Eco32I GATATC 1 cut(s) 573
Eco53kI GAGCTC 1 cut(s) 99
EcoICRI GAGCTC 1 cut(s) 99
EcoRV GATATC 1 cut(s) 573
EcoT14I CCWWGG 2 cut(s) 669, 992
EcoT38I GRGCYC 2 cut(s) 101, 1093
ErhI CCWWGG 2 cut(s) 669, 992
Esp3I CGTCTC 1 cut(s) 1129
FaeI CATG 6 cut(s) 97, 129, 404, 479, 996, 1076
FalI AAGNNNNNCTT 2 cut(s) 1021, 1053
FatI CATG 6 cut(s) 93, 125, 400, 475, 992, 1072
FauI CCCGC 1 cut(s) 1080
FbaI TGATCA 1 cut(s) 1069
FblI GTMKAC 1 cut(s) 323
Fnu4HI GCNGC 3 cut(s) 123, 266, 405
FokI GGATG 3 cut(s) 47, 788, 852
FriOI GRGCYC 2 cut(s) 101, 1093
Fsp4HI GCNGC 3 cut(s) 123, 266, 405
FspBI CTAG 4 cut(s) 146, 576, 722, 881
GlaI GCGC 1 cut(s) 1185
GluI GCNGC 3 cut(s) 123, 266, 405
HaeIII GGCC 2 cut(s) 28, 860
HapII CCGG 1 cut(s) 25
HhaI GCGC 1 cut(s) 1186
Hin1II CATG 6 cut(s) 97, 129, 404, 479, 996, 1076
Hin6I GCGC 1 cut(s) 1184
HinP1I GCGC 1 cut(s) 1184
HincII GTYRAC 1 cut(s) 636
HindII GTYRAC 1 cut(s) 636
HindIII AAGCTT 2 cut(s) 514, 917
HinfI GANTC 8 cut(s) 320, 346, 497, 555, 718, 725, 1205, 1237
HpaII CCGG 1 cut(s) 25
Hpy166II GTNNAC 6 cut(s) 10, 132, 324, 398, 636, 897
Hpy188I TCNGA 3 cut(s) 745, 1176, 1195
Hpy188III TCNNGA 8 cut(s) 592, 722, 837, 881, 968, 1025, 1103, 1114
Hpy8I GTNNAC 6 cut(s) 10, 132, 324, 398, 636, 897
HpyAV CCTTC 6 cut(s) 80, 152, 203, 594, 850, 1236
HpyCH4III ACNGT 3 cut(s) 16, 416, 1123
HpyCH4IV ACGT 2 cut(s) 366, 1063
HpyCH4V TGCA 6 cut(s) 125, 353, 404, 780, 820, 1232
HpyF10VI GCNNNNNNNGC 2 cut(s) 168, 1229
HpyF3I CTNAG 7 cut(s) 30, 274, 310, 512, 707, 1013, 1077
HpySE526I ACGT 2 cut(s) 366, 1063
Hsp92II CATG 6 cut(s) 97, 129, 404, 479, 996, 1076
HspAI GCGC 1 cut(s) 1184
KroI GCCGGC 1 cut(s) 24
KroNI GCCGGC 1 cut(s) 26
Ksp22I TGATCA 1 cut(s) 1069
Kzo9I GATC 1 cut(s) 1069
LguI GCTCTTC 1 cut(s) 966
LmnI GCTCC 1 cut(s) 472
Lsp1109I GCAGC 3 cut(s) 109, 277, 416
LweI GCATC 3 cut(s) 303, 830, 1173
MaeI CTAG 4 cut(s) 146, 576, 722, 881
MaeII ACGT 2 cut(s) 366, 1063
MaeIII GTNAC 4 cut(s) 33, 478, 560, 965
MalI GATC 1 cut(s) 1071
MboI GATC 1 cut(s) 1069
MboII GAAGA 6 cut(s) 372, 439, 503, 983, 999, 1129
MhlI GDGCHC 3 cut(s) 101, 584, 1093
MlyI GAGTC 3 cut(s) 329, 355, 1199
MmeI TCCRAC 2 cut(s) 88, 357
MnlI CCTC 5 cut(s) 39, 386, 516, 739, 815
MroNI GCCGGC 1 cut(s) 24
MseI TTAA 7 cut(s) 20, 419, 464, 486, 542, 797, 1146
MspCI CTTAAG 2 cut(s) 463, 1145
MspI CCGG 1 cut(s) 25
MvnI CGCG 2 cut(s) 171, 1186
MwoI GCNNNNNNNGC 2 cut(s) 168, 1229
NaeI GCCGGC 1 cut(s) 26
NcoI CCATGG 1 cut(s) 992
NdeII GATC 1 cut(s) 1069
NgoMIV GCCGGC 1 cut(s) 24
NlaIII CATG 6 cut(s) 97, 129, 404, 479, 996, 1076
NlaIV GGNNCC 1 cut(s) 581
NmuCI GTSAC 3 cut(s) 478, 560, 965
NspI RCATGY 2 cut(s) 404, 479
NspV TTCGAA 1 cut(s) 358
PciSI GCTCTTC 1 cut(s) 966
PdiI GCCGGC 1 cut(s) 26
PfeI GAWTC 5 cut(s) 497, 555, 718, 725, 1237
PflFI GACNNNGTC 1 cut(s) 598
PkrI GCNGC 3 cut(s) 124, 267, 406
PleI GAGTC 3 cut(s) 328, 354, 1199
PpsI GAGTC 3 cut(s) 328, 354, 1199
Ppu21I YACGTR 1 cut(s) 1064
PshBI ATTAAT 1 cut(s) 486
Psp124BI GAGCTC 1 cut(s) 101
PspN4I GGNNCC 1 cut(s) 581
PstI CTGCAG 1 cut(s) 1234
PsyI GACNNNGTC 1 cut(s) 598
RsaI GTAC 3 cut(s) 131, 144, 914
RsaNI GTAC 3 cut(s) 130, 143, 913
SacI GAGCTC 1 cut(s) 101
SapI GCTCTTC 1 cut(s) 966
SaqAI TTAA 7 cut(s) 20, 419, 464, 486, 542, 797, 1146
SatI GCNGC 3 cut(s) 123, 266, 405
Sau3AI GATC 1 cut(s) 1069
SchI GAGTC 3 cut(s) 329, 355, 1199
SduI GDGCHC 3 cut(s) 101, 584, 1093
SfaNI GCATC 3 cut(s) 303, 830, 1173
SfcI CTRYAG 1 cut(s) 1230
SfuI TTCGAA 1 cut(s) 358
SmlI CTYRAG 2 cut(s) 463, 1145
SmoI CTYRAG 2 cut(s) 463, 1145
SsiI CCGC 3 cut(s) 91, 843, 1087
SspMI CTAG 4 cut(s) 146, 576, 722, 881
SstI GAGCTC 1 cut(s) 101
StyI CCWWGG 2 cut(s) 669, 992
TaaI ACNGT 3 cut(s) 16, 416, 1123
TaiI ACGT 2 cut(s) 369, 1066
TaqI TCGA 4 cut(s) 153, 358, 591, 867
TatI WGTACW 2 cut(s) 142, 912
TfiI GAWTC 5 cut(s) 497, 555, 718, 725, 1237
Tru1I TTAA 7 cut(s) 20, 419, 464, 486, 542, 797, 1146
Tru9I TTAA 7 cut(s) 20, 419, 464, 486, 542, 797, 1146
TscAI CASTG 1 cut(s) 1017
TseFI GTSAC 3 cut(s) 478, 560, 965
TseI GCWGC 3 cut(s) 122, 265, 404
Tsp45I GTSAC 3 cut(s) 478, 560, 965
TspDTI ATGAA 4 cut(s) 171, 199, 504, 510
TspGWI ACGGA 1 cut(s) 233
TspRI CASTG 1 cut(s) 1017
Tth111I GACNNNGTC 1 cut(s) 598
Vha464I CTTAAG 2 cut(s) 463, 1145
VspI ATTAAT 1 cut(s) 486
XapI RAATTY 5 cut(s) 281, 652, 937, 1108, 1189
XbaI TCTAGA 2 cut(s) 721, 880
XceI RCATGY 2 cut(s) 404, 479
XmiI GTMKAC 1 cut(s) 323
XspI CTAG 4 cut(s) 146, 576, 722, 881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.