Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0000428

Physical Location & Seq

Genomic Coordinates Reverse (-)

9041841 .. 9042977

Gene Structure 1137 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1117600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGGGCGGCCGCGGCATCACGTACCCGAAGGTGTTATCCACGGAATCCTCCGACTCCTCCCCACTATCCCTGCGGCTCGCATGAGCTTTCTTTCCAAGCAGTGGGAAGGCCTCAGGTCTTTAGGCTGTGTATTAGATTTCGTGGAGGACAACCTTGATGGCGAACTTGATGATCGACCAAGAAACTTCATCAACACTTGCGACAGGTATTTAGACCAGTTCCGTGAGTGCGACAAGATTTCCATACACAAATTCAGGCTTCACATGAGGTACTCTTCCGAAGACGCTAACATGGTCGATGAGTGGTTGAATTTTGCAGTTGAGAGAGGGGTGAAAGAGTTGGATATCAACCTTCCATCCGGAGGTAAACGGGACAAGAAATATTGCTTTCACTTGCAGACCATTGCTAATGCTGCAAAAACTCTAACTAGCTTTAATGTGGAGAATGTCGAGTGTGATCCATATTTTTCTTTTAGAAAAACAATACCATCTACTACCTTTCTGTACTTGAAAAGTTTGTCCCTTAAAAGTGTGAAGTTGTGGTGCTTCAACATGTTCTTCGAACGTAAATTCAAGTGCCCTTCCATCGAGTATTTGTCATTAACGTCATTAACGTCAGGTGGTTATAACTATTTTTGTTTCTCAAGCTCCAGTCTTAAATCCTTGGAAATTATGCTCTGCCCTGATTTGTGGAAGATCGGAGTACTTGATGCTGTAAATCTTGAATCTTTTAAATTTGTTTCAAGTTCGGAATTGGTTGAAGGATACAGCTTGAAACATGTCTTGATCAGTGGAGCTAAGCATCTGAGAAACTTTGAATTATATGGATGCAAAGATAATGTGAAGGCGACAATCATTACTCGGAATATGTCTTTATCTATGAGCGGTTTTCTGAAGTCTAGCTCTTTGGATCCAGAGTTATGGGAGGCTAGAATCACACTTCCAGATACTGAACTACCGGCCTTTGACTGCTCATCTAAACACTTTTCTTCTCTGCGAGATTATCTTGAATGTTTTGATTGCTTCAAAGAAATTACACTGGAAGTTGACGATGCTAAGGTATATAATAATATACATATACATATACATATGCGTGTGTGTGTGTGTGTTTATATATGCAGGCTTGATTGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TAF TAF6_C

Protein Analysis

379

Amino Acids

43.7

Weight (kDa)

6.64

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	80 - 260	8.9e-08	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	99 - 294	4.3e-08	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000428)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica	MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica	Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis	pycom17g10120
rosa_chinensis	RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora	Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii	Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa	Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha	Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana	Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	627
AccB7I	CCANNNNNTGG	1 cut(s)	102
AccBSI	CCGCTC	1 cut(s)	885
AccII	CGCG	1 cut(s)	13
AccIII	TCCGGA	1 cut(s)	359
AciI	CCGC	5 cut(s)	7, 11, 13, 74, 885
AclWI	GGATC	3 cut(s)	452, 905, 918
AcoI	YGGCCR	1 cut(s)	8
AcsI	RAATTY	4 cut(s)	251, 310, 569, 734
AcuI	CTGAAG	1 cut(s)	914
AfaI	GTAC	4 cut(s)	24, 272, 506, 705
AfiI	CCNNNNNNNGG	2 cut(s)	102, 362
AflIII	ACRYGT	2 cut(s)	552, 778
AluBI	AGCT	6 cut(s)	87, 432, 648, 771, 797, 903
AluI	AGCT	6 cut(s)	87, 432, 648, 771, 797, 903
AlwI	GGATC	3 cut(s)	452, 905, 918
AlwNI	CAGNNNCTG	1 cut(s)	950
Aor13HI	TCCGGA	1 cut(s)	359
AoxI	GGCC	3 cut(s)	8, 109, 960
ApeKI	GCWGC	1 cut(s)	413
ApoI	RAATTY	4 cut(s)	251, 310, 569, 734
AsuHPI	GGTGA	1 cut(s)	343
AsuII	TTCGAA	1 cut(s)	561
AxyI	CCTNAGG	1 cut(s)	113
BaeGI	GKGCMC	1 cut(s)	581
BamHI	GGATCC	1 cut(s)	910
BbsI	GAAGAC	1 cut(s)	288
BbvI	GCAGC	1 cut(s)	400
BccI	CCATC	4 cut(s)	152, 364, 496, 593
BciVI	GTATCC	1 cut(s)	758
BclI	TGATCA	1 cut(s)	786
BfaI	CTAG	3 cut(s)	429, 900, 930
BfuI	GTATCC	1 cut(s)	758
BisI	GCNGC	5 cut(s)	8, 11, 14, 75, 414
BlpI	GCTNAGC	1 cut(s)	798
BlsI	GCNGC	5 cut(s)	9, 12, 15, 76, 415
BmcAI	AGTACT	1 cut(s)	705
BmiI	GGNNCC	1 cut(s)	912
BmsI	GCATC	5 cut(s)	25, 700, 811, 818, 1042
BpiI	GAAGAC	1 cut(s)	288
BpmI	CTGGAG	1 cut(s)	634
Bpu10I	CCTNAGC	1 cut(s)	1056
Bpu1102I	GCTNAGC	1 cut(s)	798
Bpu14I	TTCGAA	1 cut(s)	561
BpuEI	CTTGAG	1 cut(s)	628
BsaAI	YACGTR	1 cut(s)	22
BsaJI	CCNNGG	3 cut(s)	11, 40, 663
BsaWI	WCCGGW	1 cut(s)	359
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 362
Bse118I	RCCGGY	1 cut(s)	958
Bse1I	ACTGG	3 cut(s)	217, 651, 1044
Bse21I	CCTNAGG	1 cut(s)	113
Bse3DI	GCAATG	1 cut(s)	402
BseAI	TCCGGA	1 cut(s)	359
BseDI	CCNNGG	3 cut(s)	11, 40, 663
BseGI	GGATG	2 cut(s)	356, 833
BseLI	CCNNNNNNNGG	2 cut(s)	102, 362
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	2 cut(s)	127, 797
BseNI	ACTGG	3 cut(s)	217, 651, 1044
BseRI	GAGGAG	1 cut(s)	47
BseSI	GKGCMC	1 cut(s)	581
BseX3I	CGGCCG	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	400
Bsh1236I	CGCG	1 cut(s)	13
Bsh1285I	CGRYCG	1 cut(s)	11
BshFI	GGCC	3 cut(s)	10, 111, 962
BsiEI	CGRYCG	1 cut(s)	11
BsiSI	CCGG	2 cut(s)	360, 959
BslFI	GGGAC	2 cut(s)	386, 505
BslI	CCNNNNNNNGG	2 cut(s)	102, 362
BsmFI	GGGAC	2 cut(s)	386, 505
BsnI	GGCC	3 cut(s)	10, 111, 962
Bsp119I	TTCGAA	1 cut(s)	561
Bsp1286I	GDGCHC	1 cut(s)	581
Bsp13I	TCCGGA	1 cut(s)	359
Bsp143I	GATC	5 cut(s)	172, 457, 696, 786, 910
Bsp1720I	GCTNAGC	1 cut(s)	798
BspACI	CCGC	5 cut(s)	7, 11, 13, 74, 885
BspANI	GGCC	3 cut(s)	10, 111, 962
BspCNI	CTCAG	2 cut(s)	126, 798
BspEI	TCCGGA	1 cut(s)	359
BspFNI	CGCG	1 cut(s)	13
BspLI	GGNNCC	1 cut(s)	912
BspPI	GGATC	3 cut(s)	452, 905, 918
BspT104I	TTCGAA	1 cut(s)	561
BsrBI	CCGCTC	1 cut(s)	885
BsrDI	GCAATG	1 cut(s)	402
BsrFI	RCCGGY	1 cut(s)	958
BsrI	ACTGG	3 cut(s)	217, 651, 1044
BssAI	RCCGGY	1 cut(s)	958
BssECI	CCNNGG	3 cut(s)	11, 40, 663
BssMI	GATC	5 cut(s)	172, 457, 696, 786, 910
BssT1I	CCWWGG	1 cut(s)	663
Bst6I	CTCTTC	1 cut(s)	280
BstBAI	YACGTR	1 cut(s)	22
BstBI	TTCGAA	1 cut(s)	561
BstC8I	GCNNGC	2 cut(s)	79, 1121
BstDEI	CTNAG	4 cut(s)	113, 798, 806, 1056
BstDSI	CCRYGG	2 cut(s)	11, 40
BstF5I	GGATG	2 cut(s)	356, 833
BstFNI	CGCG	1 cut(s)	13
BstKTI	GATC	5 cut(s)	175, 460, 699, 789, 913
BstMBI	GATC	5 cut(s)	172, 457, 696, 786, 910
BstMCI	CGRYCG	1 cut(s)	11
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 413
BstNSI	RCATGY	2 cut(s)	556, 782
BstSLI	GKGCMC	1 cut(s)	581
BstUI	CGCG	1 cut(s)	13
BstV1I	GCAGC	1 cut(s)	400
BstV2I	GAAGAC	1 cut(s)	288
BstX2I	RGATCY	1 cut(s)	910
BstXI	CCANNNNNNTGG	1 cut(s)	921
BstYI	RGATCY	1 cut(s)	910
BstZI	CGGCCG	1 cut(s)	8
Bsu36I	CCTNAGG	1 cut(s)	113
BsuI	GTATCC	1 cut(s)	758
BsuRI	GGCC	3 cut(s)	10, 111, 962
BtgI	CCRYGG	2 cut(s)	11, 40
BtsCI	GGATG	2 cut(s)	356, 833
BtsI	GCAGTG	1 cut(s)	107
BtsIMutI	CAGTG	3 cut(s)	107, 796, 1037
Cac8I	GCNNGC	2 cut(s)	79, 1121
CaiI	CAGNNNCTG	1 cut(s)	950
CciNI	GCGGCCGC	1 cut(s)	8
Cfr10I	RCCGGY	1 cut(s)	958
Cfr42I	CCGCGG	1 cut(s)	14
CseI	GACGC	1 cut(s)	293
Csp6I	GTAC	4 cut(s)	23, 271, 505, 704
CviAII	CATG	5 cut(s)	82, 265, 292, 553, 779
CviQI	GTAC	4 cut(s)	23, 271, 505, 704
DdeI	CTNAG	4 cut(s)	113, 798, 806, 1056
DpnI	GATC	5 cut(s)	174, 459, 698, 788, 912
DpnII	GATC	5 cut(s)	172, 457, 696, 786, 910
DraI	TTTAAA	1 cut(s)	733
EaeI	YGGCCR	1 cut(s)	8
EagI	CGGCCG	1 cut(s)	8
Eam1104I	CTCTTC	1 cut(s)	280
EarI	CTCTTC	1 cut(s)	280
EclXI	CGGCCG	1 cut(s)	8
Eco130I	CCWWGG	1 cut(s)	663
Eco147I	AGGCCT	1 cut(s)	111
Eco32I	GATATC	1 cut(s)	346
Eco52I	CGGCCG	1 cut(s)	8
Eco57I	CTGAAG	1 cut(s)	914
Eco81I	CCTNAGG	1 cut(s)	113
EcoRV	GATATC	1 cut(s)	346
EcoT14I	CCWWGG	1 cut(s)	663
ErhI	CCWWGG	1 cut(s)	663
FaeI	CATG	5 cut(s)	85, 268, 295, 556, 782
FaqI	GGGAC	2 cut(s)	386, 505
FatI	CATG	5 cut(s)	81, 264, 291, 552, 778
FauNDI	CATATG	1 cut(s)	1089
FbaI	TGATCA	1 cut(s)	786
Fnu4HI	GCNGC	5 cut(s)	8, 11, 14, 75, 414
FokI	GGATG	2 cut(s)	343, 840
Fsp4HI	GCNGC	5 cut(s)	8, 11, 14, 75, 414
FspBI	CTAG	3 cut(s)	429, 900, 930
GluI	GCNGC	5 cut(s)	8, 11, 14, 75, 414
GsuI	CTGGAG	1 cut(s)	634
HaeIII	GGCC	3 cut(s)	10, 111, 962
HapII	CCGG	2 cut(s)	360, 959
HgaI	GACGC	1 cut(s)	293
Hin1II	CATG	5 cut(s)	85, 268, 295, 556, 782
HincII	GTYRAC	1 cut(s)	1048
HindII	GTYRAC	1 cut(s)	1048
HinfI	GANTC	4 cut(s)	45, 54, 725, 933
HpaII	CCGG	2 cut(s)	360, 959
HphI	GGTGA	1 cut(s)	343
Hpy166II	GTNNAC	2 cut(s)	368, 1048
Hpy188I	TCNGA	7 cut(s)	53, 280, 701, 751, 807, 864, 894
Hpy188III	TCNNGA	6 cut(s)	360, 722, 784, 914, 944, 1007
Hpy8I	GTNNAC	2 cut(s)	368, 1048
HpyAV	CCTTC	6 cut(s)	23, 101, 362, 591, 755, 838
HpyCH4IV	ACGT	4 cut(s)	21, 565, 605, 614
HpyCH4V	TGCA	5 cut(s)	317, 397, 416, 831, 1119
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 413
HpyF3I	CTNAG	4 cut(s)	113, 798, 806, 1056
HpySE526I	ACGT	4 cut(s)	21, 565, 605, 614
Hsp92II	CATG	5 cut(s)	85, 268, 295, 556, 782
Kpn2I	TCCGGA	1 cut(s)	359
Ksp22I	TGATCA	1 cut(s)	786
KspI	CCGCGG	1 cut(s)	14
Kzo9I	GATC	5 cut(s)	172, 457, 696, 786, 910
LmnI	GCTCC	2 cut(s)	653, 794
Lsp1109I	GCAGC	1 cut(s)	400
LweI	GCATC	5 cut(s)	25, 700, 811, 818, 1042
MaeI	CTAG	3 cut(s)	429, 900, 930
MaeII	ACGT	4 cut(s)	21, 565, 605, 614
MalI	GATC	5 cut(s)	174, 459, 698, 788, 912
MbiI	CCGCTC	1 cut(s)	885
MboI	GATC	5 cut(s)	172, 457, 696, 786, 910
MboII	GAAGA	5 cut(s)	267, 293, 550, 706, 981
MflI	RGATCY	1 cut(s)	910
MhlI	GDGCHC	1 cut(s)	581
MluCI	AATT	8 cut(s)	251, 310, 569, 669, 734, 752, 818, 1032
MlyI	GAGTC	1 cut(s)	48
MmeI	TCCRAC	2 cut(s)	76, 321
MnlI	CCTC	8 cut(s)	59, 68, 122, 139, 261, 320, 356, 919
MroI	TCCGGA	1 cut(s)	359
MseI	TTAA	6 cut(s)	435, 525, 602, 611, 657, 732
MslI	CAYNNNNRTG	1 cut(s)	1092
MspA1I	CMGCKG	1 cut(s)	13
MspI	CCGG	2 cut(s)	360, 959
MvnI	CGCG	1 cut(s)	13
MwoI	GCNNNNNNNGC	2 cut(s)	13, 413
NdeI	CATATG	1 cut(s)	1089
NdeII	GATC	5 cut(s)	172, 457, 696, 786, 910
NlaIII	CATG	5 cut(s)	85, 268, 295, 556, 782
NlaIV	GGNNCC	1 cut(s)	912
NotI	GCGGCCGC	1 cut(s)	8
NspI	RCATGY	2 cut(s)	556, 782
NspV	TTCGAA	1 cut(s)	561
PceI	AGGCCT	1 cut(s)	111
PciI	ACATGT	2 cut(s)	552, 778
PcsI	WCGNNNNNNNCGW	1 cut(s)	611
PfeI	GAWTC	3 cut(s)	45, 725, 933
PflMI	CCANNNNNTGG	1 cut(s)	102
PkrI	GCNGC	5 cut(s)	9, 12, 15, 76, 415
PleI	GAGTC	1 cut(s)	48
PpsI	GAGTC	1 cut(s)	48
Ppu21I	YACGTR	1 cut(s)	22
PscI	ACATGT	2 cut(s)	552, 778
PsiI	TTATAA	1 cut(s)	627
PspN4I	GGNNCC	1 cut(s)	912
PstNI	CAGNNNCTG	1 cut(s)	950
PsuI	RGATCY	1 cut(s)	910
RsaI	GTAC	4 cut(s)	24, 272, 506, 705
RsaNI	GTAC	4 cut(s)	23, 271, 505, 704
RseI	CAYNNNNRTG	1 cut(s)	1092
SacII	CCGCGG	1 cut(s)	14
SaqAI	TTAA	6 cut(s)	435, 525, 602, 611, 657, 732
SatI	GCNGC	5 cut(s)	8, 11, 14, 75, 414
Sau3AI	GATC	5 cut(s)	172, 457, 696, 786, 910
ScaI	AGTACT	1 cut(s)	705
SchI	GAGTC	1 cut(s)	48
SduI	GDGCHC	1 cut(s)	581
SfaNI	GCATC	5 cut(s)	25, 700, 811, 818, 1042
Sfr303I	CCGCGG	1 cut(s)	14
SfuI	TTCGAA	1 cut(s)	561
SgrBI	CCGCGG	1 cut(s)	14
SmiMI	CAYNNNNRTG	1 cut(s)	1092
SmlI	CTYRAG	1 cut(s)	643
SmoI	CTYRAG	1 cut(s)	643
Sse9I	AATT	8 cut(s)	251, 310, 569, 669, 734, 752, 818, 1032
SseBI	AGGCCT	1 cut(s)	111
SsiI	CCGC	5 cut(s)	7, 11, 13, 74, 885
SspI	AATATT	1 cut(s)	383
SspMI	CTAG	3 cut(s)	429, 900, 930
StuI	AGGCCT	1 cut(s)	111
StyI	CCWWGG	1 cut(s)	663
TaiI	ACGT	4 cut(s)	24, 568, 608, 617
TaqI	TCGA	5 cut(s)	175, 297, 450, 561, 588
TasI	AATT	8 cut(s)	251, 310, 569, 669, 734, 752, 818, 1032
TatI	WGTACW	2 cut(s)	504, 703
TauI	GCSGC	4 cut(s)	10, 13, 16, 77
TfiI	GAWTC	3 cut(s)	45, 725, 933
Tru1I	TTAA	6 cut(s)	435, 525, 602, 611, 657, 732
Tru9I	TTAA	6 cut(s)	435, 525, 602, 611, 657, 732
TscAI	CASTG	3 cut(s)	107, 796, 1044
TseI	GCWGC	1 cut(s)	413
TspDTI	ATGAA	1 cut(s)	178
TspGWI	ACGGA	2 cut(s)	57, 212
TspRI	CASTG	3 cut(s)	107, 796, 1044
Van91I	CCANNNNNTGG	1 cut(s)	102
XapI	RAATTY	4 cut(s)	251, 310, 569, 734
XceI	RCATGY	2 cut(s)	556, 782
XspI	CTAG	3 cut(s)	429, 900, 930
ZrmI	AGTACT	1 cut(s)	705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.