Transcription initiation factor TFIID subunit
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 353 |
| AcoI | YGGCCR | 2 cut(s) | 141, 274 |
| AcsI | RAATTY | 3 cut(s) | 175, 823, 886 |
| AcuI | CTGAAG | 1 cut(s) | 294 |
| AfaI | GTAC | 1 cut(s) | 595 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 605, 714 |
| AflIII | ACRYGT | 1 cut(s) | 455 |
| AjnI | CCWGG | 1 cut(s) | 276 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 914, 946 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 931, 963 |
| AluBI | AGCT | 4 cut(s) | 120, 434, 511, 656 |
| AluI | AGCT | 4 cut(s) | 120, 434, 511, 656 |
| Alw21I | GWGCWC | 4 cut(s) | 186, 308, 535, 876 |
| Alw26I | GTCTC | 2 cut(s) | 383, 738 |
| Alw44I | GTGCAC | 1 cut(s) | 304 |
| AoxI | GGCC | 6 cut(s) | 141, 274, 582, 672, 716, 834 |
| ApaLI | GTGCAC | 1 cut(s) | 304 |
| ApeKI | GCWGC | 1 cut(s) | 355 |
| ApoI | RAATTY | 3 cut(s) | 175, 823, 886 |
| AseI | ATTAAT | 2 cut(s) | 150, 962 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 548 |
| AspS9I | GGNCC | 3 cut(s) | 215, 716, 834 |
| AsuC2I | CCSGG | 1 cut(s) | 136 |
| AsuII | TTCGAA | 1 cut(s) | 920 |
| AvaII | GGWCC | 1 cut(s) | 215 |
| AxyI | CCTNAGG | 1 cut(s) | 188 |
| BaeGI | GKGCMC | 1 cut(s) | 308 |
| BalI | TGGCCA | 1 cut(s) | 276 |
| Bbv12I | GWGCWC | 4 cut(s) | 186, 308, 535, 876 |
| BbvI | GCAGC | 1 cut(s) | 342 |
| BccI | CCATC | 2 cut(s) | 901, 977 |
| BceAI | ACGGC | 3 cut(s) | 156, 552, 897 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 667, 701 |
| BciT130I | CCWGG | 1 cut(s) | 278 |
| BcnI | CCSGG | 1 cut(s) | 136 |
| BcoDI | GTCTC | 2 cut(s) | 383, 738 |
| BfaI | CTAG | 3 cut(s) | 375, 639, 915 |
| BisI | GCNGC | 1 cut(s) | 356 |
| BlsI | GCNGC | 1 cut(s) | 357 |
| BmcAI | AGTACT | 1 cut(s) | 595 |
| Bme1390I | CCNGG | 2 cut(s) | 136, 278 |
| Bme18I | GGWCC | 1 cut(s) | 215 |
| BmgT120I | GGNCC | 3 cut(s) | 215, 716, 834 |
| BmiI | GGNNCC | 1 cut(s) | 282 |
| BmrFI | CCNGG | 2 cut(s) | 136, 278 |
| BmsI | GCATC | 4 cut(s) | 4, 16, 554, 687 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 735, 767 |
| Bpu10I | CCTNAGC | 1 cut(s) | 219 |
| Bpu14I | TTCGAA | 1 cut(s) | 920 |
| BpuMI | CCSGG | 1 cut(s) | 136 |
| BsaAI | YACGTR | 1 cut(s) | 10 |
| BsaJI | CCNNGG | 2 cut(s) | 134, 719 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 605, 714 |
| Bse1I | ACTGG | 1 cut(s) | 945 |
| Bse21I | CCTNAGG | 1 cut(s) | 188 |
| BseBI | CCWGG | 1 cut(s) | 278 |
| BseDI | CCNNGG | 2 cut(s) | 134, 719 |
| BseGI | GGATG | 2 cut(s) | 569, 945 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 605, 714 |
| BseMII | CTCAG | 3 cut(s) | 179, 210, 526 |
| BseNI | ACTGG | 1 cut(s) | 945 |
| BseSI | GKGCMC | 1 cut(s) | 308 |
| BseXI | GCAGC | 1 cut(s) | 342 |
| BseYI | CCCAGC | 1 cut(s) | 411 |
| BshFI | GGCC | 6 cut(s) | 143, 276, 584, 674, 718, 836 |
| BsiHKAI | GWGCWC | 4 cut(s) | 186, 308, 535, 876 |
| BsiSI | CCGG | 1 cut(s) | 136 |
| BslFI | GGGAC | 1 cut(s) | 235 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 605, 714 |
| BsmAI | GTCTC | 2 cut(s) | 383, 738 |
| BsmFI | GGGAC | 1 cut(s) | 235 |
| BsnI | GGCC | 6 cut(s) | 143, 276, 584, 674, 718, 836 |
| Bsp119I | TTCGAA | 1 cut(s) | 920 |
| Bsp1286I | GDGCHC | 4 cut(s) | 186, 308, 535, 876 |
| Bsp19I | CCATGG | 1 cut(s) | 719 |
| BspACI | CCGC | 1 cut(s) | 353 |
| BspANI | GGCC | 6 cut(s) | 143, 276, 584, 674, 718, 836 |
| BspCNI | CTCAG | 3 cut(s) | 180, 211, 525 |
| BspLI | GGNNCC | 1 cut(s) | 282 |
| BspT104I | TTCGAA | 1 cut(s) | 920 |
| BsrI | ACTGG | 1 cut(s) | 945 |
| BssECI | CCNNGG | 2 cut(s) | 134, 719 |
| BssT1I | CCWWGG | 1 cut(s) | 719 |
| Bst2UI | CCWGG | 1 cut(s) | 278 |
| Bst4CI | ACNGT | 4 cut(s) | 209, 262, 699, 849 |
| BstBAI | YACGTR | 1 cut(s) | 10 |
| BstBI | TTCGAA | 1 cut(s) | 920 |
| BstC8I | GCNNGC | 1 cut(s) | 676 |
| BstDEI | CTNAG | 6 cut(s) | 79, 92, 188, 219, 512, 973 |
| BstDSI | CCRYGG | 1 cut(s) | 719 |
| BstF5I | GGATG | 2 cut(s) | 569, 945 |
| BstMAI | GTCTC | 2 cut(s) | 383, 738 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 126 |
| BstNI | CCWGG | 1 cut(s) | 278 |
| BstNSI | RCATGY | 1 cut(s) | 459 |
| BstSCI | CCNGG | 2 cut(s) | 134, 276 |
| BstSLI | GKGCMC | 1 cut(s) | 308 |
| BstSNI | TACGTA | 1 cut(s) | 10 |
| BstV1I | GCAGC | 1 cut(s) | 342 |
| Bsu36I | CCTNAGG | 1 cut(s) | 188 |
| BsuRI | GGCC | 6 cut(s) | 143, 276, 584, 674, 718, 836 |
| BtgI | CCRYGG | 1 cut(s) | 719 |
| BtsCI | GGATG | 2 cut(s) | 569, 945 |
| BtsI | GCAGTG | 1 cut(s) | 960 |
| BtsIMutI | CAGTG | 4 cut(s) | 214, 845, 903, 960 |
| Cac8I | GCNNGC | 1 cut(s) | 676 |
| Cfr13I | GGNCC | 3 cut(s) | 215, 716, 834 |
| Csp6I | GTAC | 1 cut(s) | 594 |
| CviAII | CATG | 5 cut(s) | 336, 362, 456, 720, 936 |
| CviQI | GTAC | 1 cut(s) | 594 |
| DdeI | CTNAG | 6 cut(s) | 79, 92, 188, 219, 512, 973 |
| EaeI | YGGCCR | 2 cut(s) | 141, 274 |
| Eco105I | TACGTA | 1 cut(s) | 10 |
| Eco130I | CCWWGG | 1 cut(s) | 719 |
| Eco32I | GATATC | 1 cut(s) | 85 |
| Eco47I | GGWCC | 1 cut(s) | 215 |
| Eco57I | CTGAAG | 1 cut(s) | 294 |
| Eco81I | CCTNAGG | 1 cut(s) | 188 |
| EcoO109I | RGGNCCY | 1 cut(s) | 834 |
| EcoRII | CCWGG | 1 cut(s) | 276 |
| EcoRV | GATATC | 1 cut(s) | 85 |
| EcoT14I | CCWWGG | 1 cut(s) | 719 |
| ErhI | CCWWGG | 1 cut(s) | 719 |
| FaeI | CATG | 5 cut(s) | 339, 365, 459, 723, 939 |
| FaqI | GGGAC | 1 cut(s) | 235 |
| FatI | CATG | 5 cut(s) | 335, 361, 455, 719, 935 |
| FauI | CCCGC | 1 cut(s) | 360 |
| Fnu4HI | GCNGC | 1 cut(s) | 356 |
| FokI | GGATG | 2 cut(s) | 576, 952 |
| Fsp4HI | GCNGC | 1 cut(s) | 356 |
| FspBI | CTAG | 3 cut(s) | 375, 639, 915 |
| GluI | GCNGC | 1 cut(s) | 356 |
| GsaI | CCCAGC | 1 cut(s) | 415 |
| HaeIII | GGCC | 6 cut(s) | 143, 276, 584, 674, 718, 836 |
| HapII | CCGG | 1 cut(s) | 136 |
| Hin1II | CATG | 5 cut(s) | 339, 365, 459, 723, 939 |
| HinfI | GANTC | 5 cut(s) | 439, 446, 588, 755, 926 |
| HpaII | CCGG | 1 cut(s) | 136 |
| Hpy166II | GTNNAC | 2 cut(s) | 101, 306 |
| Hpy188I | TCNGA | 1 cut(s) | 830 |
| Hpy188III | TCNNGA | 6 cut(s) | 107, 443, 639, 752, 794, 818 |
| Hpy8I | GTNNAC | 2 cut(s) | 101, 306 |
| HpyAV | CCTTC | 6 cut(s) | 295, 574, 718, 825, 847, 916 |
| HpyCH4III | ACNGT | 4 cut(s) | 209, 262, 699, 849 |
| HpyCH4IV | ACGT | 1 cut(s) | 9 |
| HpyCH4V | TGCA | 5 cut(s) | 17, 155, 265, 306, 678 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 126 |
| HpyF3I | CTNAG | 6 cut(s) | 79, 92, 188, 219, 512, 973 |
| HpySE526I | ACGT | 1 cut(s) | 9 |
| Hsp92II | CATG | 5 cut(s) | 339, 365, 459, 723, 939 |
| LmnI | GCTCC | 4 cut(s) | 181, 286, 661, 773 |
| Lsp1109I | GCAGC | 1 cut(s) | 342 |
| LweI | GCATC | 4 cut(s) | 4, 16, 554, 687 |
| MaeI | CTAG | 3 cut(s) | 375, 639, 915 |
| MaeII | ACGT | 1 cut(s) | 9 |
| MaeIII | GTNAC | 1 cut(s) | 163 |
| MboII | GAAGA | 1 cut(s) | 35 |
| MhlI | GDGCHC | 4 cut(s) | 186, 308, 535, 876 |
| MlsI | TGGCCA | 1 cut(s) | 276 |
| MluCI | AATT | 7 cut(s) | 52, 175, 294, 400, 823, 886, 959 |
| MluNI | TGGCCA | 1 cut(s) | 276 |
| MmeI | TCCRAC | 1 cut(s) | 193 |
| MnlI | CCTC | 5 cut(s) | 103, 183, 244, 682, 794 |
| Mox20I | TGGCCA | 1 cut(s) | 276 |
| MroXI | GAANNNNTTC | 1 cut(s) | 548 |
| MscI | TGGCCA | 1 cut(s) | 276 |
| MseI | TTAA | 5 cut(s) | 150, 255, 293, 329, 962 |
| Msp20I | TGGCCA | 1 cut(s) | 276 |
| MspA1I | CMGCKG | 1 cut(s) | 355 |
| MspI | CCGG | 1 cut(s) | 136 |
| MspR9I | CCNGG | 2 cut(s) | 136, 278 |
| MvaI | CCWGG | 1 cut(s) | 278 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 126 |
| NciI | CCSGG | 1 cut(s) | 136 |
| NcoI | CCATGG | 1 cut(s) | 719 |
| NlaIII | CATG | 5 cut(s) | 339, 365, 459, 723, 939 |
| NlaIV | GGNNCC | 1 cut(s) | 282 |
| NmuCI | GTSAC | 1 cut(s) | 163 |
| NspI | RCATGY | 1 cut(s) | 459 |
| NspV | TTCGAA | 1 cut(s) | 920 |
| PciI | ACATGT | 1 cut(s) | 455 |
| PdmI | GAANNNNTTC | 1 cut(s) | 548 |
| PfeI | GAWTC | 5 cut(s) | 439, 446, 588, 755, 926 |
| PkrI | GCNGC | 1 cut(s) | 357 |
| Ppu21I | YACGTR | 1 cut(s) | 10 |
| PscI | ACATGT | 1 cut(s) | 455 |
| PshBI | ATTAAT | 2 cut(s) | 150, 962 |
| Psp6I | CCWGG | 1 cut(s) | 276 |
| PspFI | CCCAGC | 1 cut(s) | 411 |
| PspGI | CCWGG | 1 cut(s) | 276 |
| PspN4I | GGNNCC | 1 cut(s) | 282 |
| PspPI | GGNCC | 3 cut(s) | 215, 716, 834 |
| RsaI | GTAC | 1 cut(s) | 595 |
| RsaNI | GTAC | 1 cut(s) | 594 |
| SaqAI | TTAA | 5 cut(s) | 150, 255, 293, 329, 962 |
| SatI | GCNGC | 1 cut(s) | 356 |
| Sau96I | GGNCC | 3 cut(s) | 215, 716, 834 |
| ScaI | AGTACT | 1 cut(s) | 595 |
| ScrFI | CCNGG | 2 cut(s) | 136, 278 |
| SduI | GDGCHC | 4 cut(s) | 186, 308, 535, 876 |
| SetI | ASST | 9 cut(s) | 12, 114, 122, 189, 220, 436, 513, 658, 710 |
| SfaNI | GCATC | 4 cut(s) | 4, 16, 554, 687 |
| SfuI | TTCGAA | 1 cut(s) | 920 |
| SinI | GGWCC | 1 cut(s) | 215 |
| SnaBI | TACGTA | 1 cut(s) | 10 |
| Sse9I | AATT | 7 cut(s) | 52, 175, 294, 400, 823, 886, 959 |
| SsiI | CCGC | 1 cut(s) | 353 |
| SspMI | CTAG | 3 cut(s) | 375, 639, 915 |
| StyD4I | CCNGG | 2 cut(s) | 134, 276 |
| StyI | CCWWGG | 1 cut(s) | 719 |
| TaaI | ACNGT | 4 cut(s) | 209, 262, 699, 849 |
| TaiI | ACGT | 1 cut(s) | 12 |
| TaqI | TCGA | 3 cut(s) | 687, 753, 920 |
| TasI | AATT | 7 cut(s) | 52, 175, 294, 400, 823, 886, 959 |
| TatI | WGTACW | 1 cut(s) | 593 |
| TfiI | GAWTC | 5 cut(s) | 439, 446, 588, 755, 926 |
| Tru1I | TTAA | 5 cut(s) | 150, 255, 293, 329, 962 |
| Tru9I | TTAA | 5 cut(s) | 150, 255, 293, 329, 962 |
| TscAI | CASTG | 4 cut(s) | 214, 852, 903, 960 |
| TseFI | GTSAC | 1 cut(s) | 163 |
| TseI | GCWGC | 1 cut(s) | 355 |
| Tsp45I | GTSAC | 1 cut(s) | 163 |
| TspDTI | ATGAA | 6 cut(s) | 36, 45, 324, 350, 444, 452 |
| TspGWI | ACGGA | 1 cut(s) | 518 |
| TspRI | CASTG | 4 cut(s) | 214, 852, 903, 960 |
| VneI | GTGCAC | 1 cut(s) | 304 |
| VpaK11BI | GGWCC | 1 cut(s) | 215 |
| VspI | ATTAAT | 2 cut(s) | 150, 962 |
| XapI | RAATTY | 3 cut(s) | 175, 823, 886 |
| XbaI | TCTAGA | 1 cut(s) | 638 |
| XceI | RCATGY | 1 cut(s) | 459 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 952 |
| XmnI | GAANNNNTTC | 1 cut(s) | 548 |
| XspI | CTAG | 3 cut(s) | 375, 639, 915 |
| ZrmI | AGTACT | 1 cut(s) | 595 |