Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000428

Physical Location & Seq

Genomic Coordinates Reverse (-)

49566561 .. 49568049

Gene Structure 1489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG237300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCCATCAATACGGTACCACCTCACTTACCAGACCTTGTTATCCACCGAATCATCCAACTACTTCCCACAAAAGCCGCCGTCCGCATGAGTTTTCTCTCCAAGCAATGGGAAGGTGTTTTGTCCTCGGTCCCTATATTAGATTTCGATGAGGGTGATGAGAATGACAACAACCTGGTTCGACATAGGAAGTTCGTTGACAACATCTTGAAAAGGACTCTCAGATCCTTTGGTGTTAAGCAGTGTAAGGCTGGTGAAATTCGAGTTTACAAAGCAGTGAATCTTGAATCACTTACTGTTGTTTCTTCGAGTTTTGAGCTCGAGAGTATGATCTTTAGAGAGTGCTACAATCTGAAATATATGAACATATTTGCTCGGCATTTGAAAGTGTTTCAGTTAGATGGATGCTATGATGTGAAAGCCACAATCAATGCCCCGAAGCTCTGCGATTTTAACTTCGAGGGTTATCTGAAGTCCGAATTTTCTTTGAAAGCTCCGAAGCTGTGGTCGGCCTCCATCCTACTATGGGACAATTGGGACGGAGAGTTTCTGAATTTCGACGGACCATGGAAACATCTTCCTAGATTGAGAGACTTTCTTGGAGAATTCAAAGCTACCAAAGGTATGACACTTCTCGTATCTCATTTCAAGGCACTCATCTTTCCGAAAGAATTCAGAGAGACCTTCTCTTCATCTTCACCAAAATTGCTTAATCTCAAAGTTCTTGATCTGGCGATGGAGAACGCCCCAACAAACATGAGAGACAAAAAAGACTTGACGAACTCCTTACTTTGGATGGCGCCTACTCTACAGGAAATTAATCAATTAGAATACAATGAAGAGTTGGAAATTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TAF TAF6_C

Protein Analysis

285

Amino Acids

33.0

Weight (kDa)

7.01

Isoelectric Point (pI)

41.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000428)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica	MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica	Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis	pycom17g10120
rosa_chinensis	RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora	Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii	Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa	Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha	Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana	Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	16
AccB1I	GGYRCC	2 cut(s)	16, 799
AccB7I	CCANNNNNTGG	1 cut(s)	108
AciI	CCGC	2 cut(s)	78, 85
AclWI	GGATC	1 cut(s)	219
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	6 cut(s)	258, 479, 553, 605, 671, 849
AcuI	CTGAAG	1 cut(s)	491
AcyI	GRCGYC	1 cut(s)	800
AfaI	GTAC	1 cut(s)	18
AfiI	CCNNNNNNNGG	3 cut(s)	108, 526, 792
AgsI	TTSAA	6 cut(s)	211, 287, 385, 490, 610, 649
AjnI	CCWGG	1 cut(s)	174
AluBI	AGCT	5 cut(s)	319, 442, 494, 502, 614
AluI	AGCT	5 cut(s)	319, 442, 494, 502, 614
Alw21I	GWGCWC	1 cut(s)	321
Alw26I	GTCTC	3 cut(s)	585, 674, 756
AlwI	GGATC	1 cut(s)	219
Ama87I	CYCGRG	1 cut(s)	320
AoxI	GGCC	2 cut(s)	3, 510
ApoI	RAATTY	6 cut(s)	258, 479, 553, 605, 671, 849
ArsI	GACNNNNNNTTYG	2 cut(s)	491, 523
AseI	ATTAAT	1 cut(s)	819
Asp700I	GAANNNNTTC	1 cut(s)	671
Asp718I	GGTACC	1 cut(s)	16
AspLEI	GCGC	1 cut(s)	802
AspS9I	GGNCC	2 cut(s)	130, 563
AsuHPI	GGTGA	3 cut(s)	167, 266, 690
AvaI	CYCGRG	1 cut(s)	320
AvaII	GGWCC	2 cut(s)	130, 563
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	16, 799
BanII	GRGCYC	1 cut(s)	321
Bbv12I	GWGCWC	1 cut(s)	321
BccI	CCATC	5 cut(s)	14, 395, 524, 730, 790
BceAI	ACGGC	1 cut(s)	65
BciT130I	CCWGG	1 cut(s)	176
BcoDI	GTCTC	3 cut(s)	585, 674, 756
BfaI	CTAG	1 cut(s)	582
BfmI	CTRYAG	1 cut(s)	809
BfoI	RGCGCY	1 cut(s)	803
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
Bme1390I	CCNGG	1 cut(s)	176
Bme18I	GGWCC	2 cut(s)	130, 563
BmeT110I	CYCGRG	1 cut(s)	320
BmgT120I	GGNCC	2 cut(s)	130, 563
BmiI	GGNNCC	3 cut(s)	18, 132, 801
BmrFI	CCNGG	1 cut(s)	176
BmsI	GCATC	1 cut(s)	395
BplI	GAGNNNNNCTC	2 cut(s)	671, 703
BsaHI	GRCGYC	1 cut(s)	800
BsaI	GGTCTC	1 cut(s)	674
BsaJI	CCNNGG	2 cut(s)	126, 566
Bsc4I	CCNNNNNNNGG	3 cut(s)	108, 526, 792
Bse3DI	GCAATG	1 cut(s)	113
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	2 cut(s)	126, 566
BseGI	GGATG	4 cut(s)	54, 410, 516, 801
BseLI	CCNNNNNNNGG	3 cut(s)	108, 526, 792
BseMI	GCAATG	1 cut(s)	113
BseMII	CTCAG	1 cut(s)	235
BshFI	GGCC	2 cut(s)	5, 512
BshNI	GGYRCC	2 cut(s)	16, 799
BsiHKAI	GWGCWC	1 cut(s)	321
BsiHKCI	CYCGRG	1 cut(s)	320
BslFI	GGGAC	3 cut(s)	116, 542, 551
BslI	CCNNNNNNNGG	3 cut(s)	108, 526, 792
BsmAI	GTCTC	3 cut(s)	585, 674, 756
BsmFI	GGGAC	3 cut(s)	116, 542, 551
BsnI	GGCC	2 cut(s)	5, 512
Bso31I	GGTCTC	1 cut(s)	674
BsoBI	CYCGRG	1 cut(s)	320
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	3 cut(s)	224, 330, 727
Bsp19I	CCATGG	1 cut(s)	566
BspACI	CCGC	2 cut(s)	78, 85
BspANI	GGCC	2 cut(s)	5, 512
BspCNI	CTCAG	1 cut(s)	234
BspLI	GGNNCC	3 cut(s)	18, 132, 801
BspPI	GGATC	1 cut(s)	219
BspT107I	GGYRCC	2 cut(s)	16, 799
BspTNI	GGTCTC	1 cut(s)	674
BsrDI	GCAATG	1 cut(s)	113
BssECI	CCNNGG	2 cut(s)	126, 566
BssMI	GATC	3 cut(s)	224, 330, 727
BssNI	GRCGYC	1 cut(s)	800
BssT1I	CCWWGG	1 cut(s)	566
Bst2UI	CCWGG	1 cut(s)	176
Bst4CI	ACNGT	2 cut(s)	16, 298
Bst6I	CTCTTC	2 cut(s)	694, 834
BstACI	GRCGYC	1 cut(s)	800
BstDEI	CTNAG	1 cut(s)	221
BstDSI	CCRYGG	1 cut(s)	566
BstF5I	GGATG	4 cut(s)	54, 410, 516, 801
BstH2I	RGCGCY	1 cut(s)	803
BstHHI	GCGC	1 cut(s)	802
BstKTI	GATC	3 cut(s)	227, 333, 730
BstMAI	GTCTC	3 cut(s)	585, 674, 756
BstMBI	GATC	3 cut(s)	224, 330, 727
BstNI	CCWGG	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	174
BstSFI	CTRYAG	1 cut(s)	809
BstX2I	RGATCY	1 cut(s)	224
BstYI	RGATCY	1 cut(s)	224
BsuRI	GGCC	2 cut(s)	5, 512
BtgI	CCRYGG	1 cut(s)	566
BtgZI	GCGATG	1 cut(s)	749
BtsCI	GGATG	4 cut(s)	54, 410, 516, 801
BtsI	GCAGTG	2 cut(s)	248, 282
BtsIMutI	CAGTG	2 cut(s)	248, 282
CfoI	GCGC	1 cut(s)	802
Cfr13I	GGNCC	2 cut(s)	130, 563
CsiI	ACCWGGT	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	17
CviAII	CATG	3 cut(s)	88, 567, 757
CviQI	GTAC	1 cut(s)	17
DdeI	CTNAG	1 cut(s)	221
DinI	GGCGCC	1 cut(s)	801
DpnI	GATC	3 cut(s)	226, 332, 729
DpnII	GATC	3 cut(s)	224, 330, 727
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	694, 834
EarI	CTCTTC	2 cut(s)	694, 834
Ecl136II	GAGCTC	1 cut(s)	319
Eco130I	CCWWGG	1 cut(s)	566
Eco24I	GRGCYC	1 cut(s)	321
Eco31I	GGTCTC	1 cut(s)	674
Eco47I	GGWCC	2 cut(s)	130, 563
Eco53kI	GAGCTC	1 cut(s)	319
Eco57I	CTGAAG	1 cut(s)	491
Eco88I	CYCGRG	1 cut(s)	320
EcoICRI	GAGCTC	1 cut(s)	319
EcoRI	GAATTC	2 cut(s)	605, 671
EcoRII	CCWGG	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	566
EcoT38I	GRGCYC	1 cut(s)	321
EgeI	GGCGCC	1 cut(s)	801
EheI	GGCGCC	1 cut(s)	801
ErhI	CCWWGG	1 cut(s)	566
FaeI	CATG	3 cut(s)	91, 570, 760
FaqI	GGGAC	3 cut(s)	116, 542, 551
FatI	CATG	3 cut(s)	87, 566, 756
Fnu4HI	GCNGC	1 cut(s)	78
FokI	GGATG	4 cut(s)	41, 417, 503, 808
FriOI	GRGCYC	1 cut(s)	321
Fsp4HI	GCNGC	1 cut(s)	78
FspBI	CTAG	1 cut(s)	582
GlaI	GCGC	1 cut(s)	801
GluI	GCNGC	1 cut(s)	78
HaeII	RGCGCY	1 cut(s)	803
HaeIII	GGCC	2 cut(s)	5, 512
HhaI	GCGC	1 cut(s)	802
Hin1I	GRCGYC	1 cut(s)	800
Hin1II	CATG	3 cut(s)	91, 570, 760
Hin6I	GCGC	1 cut(s)	800
HinP1I	GCGC	1 cut(s)	800
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	4 cut(s)	51, 217, 280, 287
HphI	GGTGA	3 cut(s)	167, 266, 690
Hpy166II	GTNNAC	2 cut(s)	199, 268
Hpy188I	TCNGA	8 cut(s)	224, 354, 471, 478, 498, 552, 666, 677
Hpy188III	TCNNGA	4 cut(s)	208, 284, 322, 725
Hpy8I	GTNNAC	2 cut(s)	199, 268
Hpy99I	CGWCG	1 cut(s)	563
HpyAV	CCTTC	2 cut(s)	107, 694
HpyCH4III	ACNGT	2 cut(s)	16, 298
HpyF3I	CTNAG	1 cut(s)	221
Hsp92I	GRCGYC	1 cut(s)	800
Hsp92II	CATG	3 cut(s)	91, 570, 760
HspAI	GCGC	1 cut(s)	800
KasI	GGCGCC	1 cut(s)	799
KpnI	GGTACC	1 cut(s)	20
Kzo9I	GATC	3 cut(s)	224, 330, 727
LmnI	GCTCC	1 cut(s)	499
LpnPI	CCDG	6 cut(s)	45, 161, 188, 237, 716, 797
LweI	GCATC	1 cut(s)	395
MabI	ACCWGGT	1 cut(s)	174
MaeI	CTAG	1 cut(s)	582
MalI	GATC	3 cut(s)	226, 332, 729
MboI	GATC	3 cut(s)	224, 330, 727
MboII	GAAGA	5 cut(s)	297, 569, 681, 687, 851
MfeI	CAATTG	1 cut(s)	532
MflI	RGATCY	1 cut(s)	224
MhlI	GDGCHC	1 cut(s)	321
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	800
MlyI	GAGTC	1 cut(s)	211
MmeI	TCCRAC	2 cut(s)	82, 825
MnlI	CCTC	5 cut(s)	33, 136, 145, 454, 523
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	671
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	237, 453, 711, 819
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	176
MunI	CAATTG	1 cut(s)	532
MvaI	CCWGG	1 cut(s)	176
NarI	GGCGCC	1 cut(s)	800
NcoI	CCATGG	1 cut(s)	566
NdeII	GATC	3 cut(s)	224, 330, 727
NlaIII	CATG	3 cut(s)	91, 570, 760
NlaIV	GGNNCC	3 cut(s)	18, 132, 801
NmeAIII	GCCGAG	1 cut(s)	355
PaeR7I	CTCGAG	1 cut(s)	320
PdmI	GAANNNNTTC	1 cut(s)	671
PfeI	GAWTC	3 cut(s)	51, 280, 287
PflMI	CCANNNNNTGG	1 cut(s)	108
PkrI	GCNGC	1 cut(s)	79
PleI	GAGTC	1 cut(s)	211
PluTI	GGCGCC	1 cut(s)	803
PpsI	GAGTC	1 cut(s)	211
PshBI	ATTAAT	1 cut(s)	819
Psp124BI	GAGCTC	1 cut(s)	321
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PspN4I	GGNNCC	3 cut(s)	18, 132, 801
PspPI	GGNCC	2 cut(s)	130, 563
PsuI	RGATCY	1 cut(s)	224
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
SacI	GAGCTC	1 cut(s)	321
SaqAI	TTAA	4 cut(s)	237, 453, 711, 819
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	3 cut(s)	224, 330, 727
Sau96I	GGNCC	2 cut(s)	130, 563
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	176
SduI	GDGCHC	1 cut(s)	321
SexAI	ACCWGGT	1 cut(s)	174
SfaNI	GCATC	1 cut(s)	395
SfcI	CTRYAG	1 cut(s)	809
SfoI	GGCGCC	1 cut(s)	801
Sfr274I	CTCGAG	1 cut(s)	320
SinI	GGWCC	2 cut(s)	130, 563
SlaI	CTCGAG	1 cut(s)	320
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
SsiI	CCGC	2 cut(s)	78, 85
SspDI	GGCGCC	1 cut(s)	799
SspMI	CTAG	1 cut(s)	582
SstI	GAGCTC	1 cut(s)	321
StyD4I	CCNGG	1 cut(s)	174
StyI	CCWWGG	1 cut(s)	566
TaaI	ACNGT	2 cut(s)	16, 298
TaqI	TCGA	7 cut(s)	147, 181, 262, 308, 321, 459, 558
TaqII	GACCGA	1 cut(s)	118
TauI	GCSGC	1 cut(s)	80
TfiI	GAWTC	3 cut(s)	51, 280, 287
Tru1I	TTAA	4 cut(s)	237, 453, 711, 819
Tru9I	TTAA	4 cut(s)	237, 453, 711, 819
TscAI	CASTG	2 cut(s)	248, 282
TspDTI	ATGAA	3 cut(s)	377, 681, 852
TspGWI	ACGGA	2 cut(s)	555, 576
TspRI	CASTG	2 cut(s)	248, 282
Van91I	CCANNNNNTGG	1 cut(s)	108
VpaK11BI	GGWCC	2 cut(s)	130, 563
VspI	ATTAAT	1 cut(s)	819
XapI	RAATTY	6 cut(s)	258, 479, 553, 605, 671, 849
XhoI	CTCGAG	1 cut(s)	320
XmnI	GAANNNNTTC	1 cut(s)	671
XspI	CTAG	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.