Rmu_ssc0000368.1_g000042

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000368.1
OG0000428
Physical Location & Seq
Forward (+)
234002 .. 234679
678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000368.1_g000042.1.cds

Sequence Viewer

Length: 678 bp
atgccagttagtgaattgaactacgacatgttgtcatgtttggatcatatcgaagcaagcagggctgcaagtcgcatgaaaaacttgttttacttgtctcggatggctcttgtgagtcttgtcaatgcaaaatctgtgactactctaaatttagagtatgtgagaatgaagaaaatctacaataagcatcctatatctgttggtctgcttccctctttgaaatccatgtccttcaagagggtgcattttgactacgaagctctcctctccttaatttctgagtgccctttcattgagcacttgtcactaacttcatgttctttccaaggggacatttatatgcggagttccagtctcaaatctttggaaattgaccgatgcgacgctcttttagttcgagtctatgaagctacaaatcttaaatctctttcagttgtatcaggtatcggttcatctgaattttcgcagcttgagcaggtgatatttccaaatctcgaagaactttatttctcagcgaagattcctgcaagtaagatgagagatggcaaagagttggtggattcctttaaatggatggcaccttataaacaggatattagatgtgtaccatggagcagcggattccttgaaatggatgacaccttattttcaagatattcgatgtttaccatggagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

225

Amino Acids

25.75

Weight (kDa)

6.44

Isoelectric Point (pI)

52.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 585
AarI CACCTGC 1 cut(s) 466
Acc36I ACCTGC 1 cut(s) 466
AccB1I GGYRCC 1 cut(s) 577
AciI CCGC 2 cut(s) 343, 618
AclWI GGATC 1 cut(s) 51
AcsI RAATTY 2 cut(s) 148, 458
AfaI GTAC 1 cut(s) 606
AfiI CCNNNNNNNGG 3 cut(s) 237, 570, 631
AflIII ACRYGT 1 cut(s) 27
AgsI TTSAA 5 cut(s) 19, 220, 235, 629, 651
AhdI GACNNNNNGTC 1 cut(s) 31
AluBI AGCT 3 cut(s) 260, 410, 469
AluI AGCT 3 cut(s) 260, 410, 469
Alw21I GWGCWC 1 cut(s) 300
Alw26I GTCTC 2 cut(s) 102, 359
AlwI GGATC 1 cut(s) 51
ApeKI GCWGC 3 cut(s) 65, 466, 615
ApoI RAATTY 2 cut(s) 148, 458
AsuHPI GGTGA 1 cut(s) 490
BaeGI GKGCMC 1 cut(s) 287
BanI GGYRCC 1 cut(s) 577
BarI GAAGNNNNNNTAC 2 cut(s) 161, 193
Bbv12I GWGCWC 1 cut(s) 300
BbvI GCAGC 3 cut(s) 52, 478, 627
BccI CCATC 3 cut(s) 97, 536, 568
BcoDI GTCTC 2 cut(s) 102, 359
BfuAI ACCTGC 1 cut(s) 466
BisI GCNGC 3 cut(s) 66, 467, 616
BlsI GCNGC 3 cut(s) 67, 468, 617
BmeRI GACNNNNNGTC 1 cut(s) 31
BmiI GGNNCC 1 cut(s) 579
BmsI GCATC 2 cut(s) 196, 368
BpuEI CTTGAG 1 cut(s) 491
BsaJI CCNNGG 3 cut(s) 325, 608, 669
BsaXI ACNNNNNCTCC 2 cut(s) 337, 367
Bsc4I CCNNNNNNNGG 3 cut(s) 237, 570, 631
Bse1I ACTGG 2 cut(s) 5, 351
BseDI CCNNGG 3 cut(s) 325, 608, 669
BseGI GGATG 4 cut(s) 108, 187, 579, 640
BseLI CCNNNNNNNGG 3 cut(s) 237, 570, 631
BseMII CTCAG 2 cut(s) 270, 525
BseNI ACTGG 2 cut(s) 5, 351
BseRI GAGGAG 1 cut(s) 254
BseSI GKGCMC 1 cut(s) 287
BseXI GCAGC 3 cut(s) 52, 478, 627
BshNI GGYRCC 1 cut(s) 577
BsiHKAI GWGCWC 1 cut(s) 300
BslFI GGGAC 1 cut(s) 344
BslI CCNNNNNNNGG 3 cut(s) 237, 570, 631
BsmAI GTCTC 2 cut(s) 102, 359
BsmFI GGGAC 1 cut(s) 344
Bsp1286I GDGCHC 2 cut(s) 287, 300
Bsp143I GATC 1 cut(s) 43
Bsp19I CCATGG 2 cut(s) 608, 669
BspACI CCGC 2 cut(s) 343, 618
BspCNI CTCAG 2 cut(s) 271, 524
BspLI GGNNCC 1 cut(s) 579
BspMI ACCTGC 1 cut(s) 466
BspPI GGATC 1 cut(s) 51
BspT107I GGYRCC 1 cut(s) 577
BsrI ACTGG 2 cut(s) 5, 351
BssECI CCNNGG 3 cut(s) 325, 608, 669
BssMI GATC 1 cut(s) 43
BssT1I CCWWGG 3 cut(s) 325, 608, 669
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 2 cut(s) 279, 511
BstDSI CCRYGG 2 cut(s) 608, 669
BstENI CCTNNNNNAGG 1 cut(s) 235
BstF5I GGATG 4 cut(s) 108, 187, 579, 640
BstKTI GATC 1 cut(s) 46
BstMAI GTCTC 2 cut(s) 102, 359
BstMBI GATC 1 cut(s) 43
BstMWI GCNNNNNNNGC 2 cut(s) 62, 472
BstNSI RCATGY 1 cut(s) 31
BstSLI GKGCMC 1 cut(s) 287
BstV1I GCAGC 3 cut(s) 52, 478, 627
BtgI CCRYGG 2 cut(s) 608, 669
BtsCI GGATG 4 cut(s) 108, 187, 579, 640
BveI ACCTGC 1 cut(s) 466
Cac8I GCNNGC 1 cut(s) 58
CseI GACGC 1 cut(s) 392
Csp6I GTAC 1 cut(s) 605
CviAII CATG 7 cut(s) 28, 36, 76, 226, 315, 609, 670
CviJI RGCY 5 cut(s) 65, 107, 260, 410, 469
CviKI_1 RGCY 5 cut(s) 65, 107, 260, 410, 469
CviQI GTAC 1 cut(s) 605
DdeI CTNAG 2 cut(s) 279, 511
DpnI GATC 1 cut(s) 45
DpnII GATC 1 cut(s) 43
DraI TTTAAA 1 cut(s) 568
DriI GACNNNNNGTC 1 cut(s) 31
Eam1105I GACNNNNNGTC 1 cut(s) 31
Eco130I CCWWGG 3 cut(s) 325, 608, 669
EcoNI CCTNNNNNAGG 1 cut(s) 235
EcoT14I CCWWGG 3 cut(s) 325, 608, 669
ErhI CCWWGG 3 cut(s) 325, 608, 669
FaeI CATG 7 cut(s) 31, 39, 79, 229, 318, 612, 673
FaqI GGGAC 1 cut(s) 344
FatI CATG 7 cut(s) 27, 35, 75, 225, 314, 608, 669
Fnu4HI GCNGC 3 cut(s) 66, 467, 616
FokI GGATG 4 cut(s) 115, 174, 586, 647
Fsp4HI GCNGC 3 cut(s) 66, 467, 616
GluI GCNGC 3 cut(s) 66, 467, 616
HgaI GACGC 1 cut(s) 392
Hin1II CATG 7 cut(s) 31, 39, 79, 229, 318, 612, 673
HinfI GANTC 5 cut(s) 115, 399, 520, 560, 621
HphI GGTGA 1 cut(s) 490
Hpy166II GTNNAC 2 cut(s) 605, 666
Hpy188I TCNGA 3 cut(s) 102, 280, 457
Hpy188III TCNNGA 3 cut(s) 235, 494, 651
Hpy8I GTNNAC 2 cut(s) 605, 666
Hpy99I CGWCG 1 cut(s) 386
HpyAV CCTTC 1 cut(s) 241
HpyCH4V TGCA 4 cut(s) 68, 128, 244, 527
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 472
HpyF3I CTNAG 2 cut(s) 279, 511
Hsp92II CATG 7 cut(s) 31, 39, 79, 229, 318, 612, 673
Kzo9I GATC 1 cut(s) 43
LmnI GCTCC 1 cut(s) 612
LpnPI CCDG 7 cut(s) 18, 46, 364, 426, 461, 537, 575
Lsp1109I GCAGC 3 cut(s) 52, 478, 627
LweI GCATC 2 cut(s) 196, 368
MaeIII GTNAC 2 cut(s) 136, 303
MalI GATC 1 cut(s) 45
MboI GATC 1 cut(s) 43
MboII GAAGA 3 cut(s) 181, 509, 529
MhlI GDGCHC 2 cut(s) 287, 300
MluCI AATT 5 cut(s) 14, 148, 273, 369, 458
MlyI GAGTC 2 cut(s) 124, 408
MnlI CCTC 3 cut(s) 223, 231, 275
MseI TTAA 3 cut(s) 272, 420, 567
MslI CAYNNNNRTG 1 cut(s) 338
MspA1I CMGCKG 1 cut(s) 618
MwoI GCNNNNNNNGC 2 cut(s) 62, 472
NcoI CCATGG 2 cut(s) 608, 669
NdeII GATC 1 cut(s) 43
NlaIII CATG 7 cut(s) 31, 39, 79, 229, 318, 612, 673
NlaIV GGNNCC 1 cut(s) 579
NmuCI GTSAC 2 cut(s) 136, 303
NspI RCATGY 1 cut(s) 31
PaqCI CACCTGC 1 cut(s) 466
PciI ACATGT 1 cut(s) 27
PfeI GAWTC 3 cut(s) 520, 560, 621
PkrI GCNGC 3 cut(s) 67, 468, 617
PleI GAGTC 2 cut(s) 123, 407
PpsI GAGTC 2 cut(s) 123, 407
PscI ACATGT 1 cut(s) 27
PsiI TTATAA 1 cut(s) 585
PspN4I GGNNCC 1 cut(s) 579
RsaI GTAC 1 cut(s) 606
RsaNI GTAC 1 cut(s) 605
RseI CAYNNNNRTG 1 cut(s) 338
SaqAI TTAA 3 cut(s) 272, 420, 567
SatI GCNGC 3 cut(s) 66, 467, 616
Sau3AI GATC 1 cut(s) 43
SchI GAGTC 2 cut(s) 124, 408
SduI GDGCHC 2 cut(s) 287, 300
SetI ASST 7 cut(s) 262, 412, 445, 471, 480, 583, 644
SfaNI GCATC 2 cut(s) 196, 368
SmiMI CAYNNNNRTG 1 cut(s) 338
SmlI CTYRAG 1 cut(s) 470
SmoI CTYRAG 1 cut(s) 470
Sse9I AATT 5 cut(s) 14, 148, 273, 369, 458
SsiI CCGC 2 cut(s) 343, 618
StyI CCWWGG 3 cut(s) 325, 608, 669
TaqI TCGA 4 cut(s) 51, 397, 495, 659
TaqII GACCGA 1 cut(s) 390
TasI AATT 5 cut(s) 14, 148, 273, 369, 458
TfiI GAWTC 3 cut(s) 520, 560, 621
Tru1I TTAA 3 cut(s) 272, 420, 567
Tru9I TTAA 3 cut(s) 272, 420, 567
TseFI GTSAC 2 cut(s) 136, 303
TseI GCWGC 3 cut(s) 65, 466, 615
Tsp45I GTSAC 2 cut(s) 136, 303
TspDTI ATGAA 6 cut(s) 92, 182, 280, 303, 420, 441
XagI CCTNNNNNAGG 1 cut(s) 235
XapI RAATTY 2 cut(s) 148, 458
XceI RCATGY 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.