Rmu_sc0008742.1_g000001

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008742.1
OG0000428
Physical Location & Seq
Reverse (-)
2 .. 795
794 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008742.1_g000001.1.cds

Sequence Viewer

Length: 704 bp
atgtcatggccatcaatacgcaatgggaaggtgcatgttttgtcctcggtccctatattagatttcgatgagggtgatgagaatgacaacaacctggttcgacataggaagttcgttgacaacattttgaaaaggtctttggaattgtgtgagaaagagaagcagaaacaactgctcgataaattcaggctttgcatgacgaggtacttatctgcagacgctaccgtagtaaataagtggttgcgttattcaatggagagaagtgtgaaggagttggatatcagccttagggttgataaatcctattggctttggggtggactgagaagctactactgcttgtctcgaaaggcacttgccaatgcaaacagtataactactctgaatttggagtacatgagaataaagaacattagcagatttggcagcagtactgctaagcctatacgccttcttccctctttgaaagctatgtcccttaaaaatgtgcactttgatactaatgcgctcttgtacttaactggagagtgcccatccatggagtctttgtcactaacttcatgttctttcgcaaatttcgaaatttgtgtttcaaattccagtctcagatgctttggtgttaatcagtgtaaggctggtgaaattcgagtttacgaagcagtgaatcttgaatcacttactgttgtttcttcgagttttgagct
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

235

Amino Acids

26.85

Weight (kDa)

8.98

Isoelectric Point (pI)

46.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 8
AcsI RAATTY 6 cut(s) 182, 385, 574, 582, 595, 642
AfaI GTAC 4 cut(s) 206, 395, 433, 515
AfiI CCNNNNNNNGG 1 cut(s) 538
AgsI TTSAA 5 cut(s) 130, 252, 466, 594, 671
AjnI CCWGG 1 cut(s) 93
AjuI GAANNNNNNNTTGG 2 cut(s) 122, 154
AluBI AGCT 3 cut(s) 330, 470, 703
AluI AGCT 3 cut(s) 330, 470, 703
Alw21I GWGCWC 1 cut(s) 492
Alw26I GTCTC 2 cut(s) 348, 608
Alw44I GTGCAC 1 cut(s) 488
AoxI GGCC 1 cut(s) 8
ApaLI GTGCAC 1 cut(s) 488
ApeKI GCWGC 1 cut(s) 426
ApoI RAATTY 6 cut(s) 182, 385, 574, 582, 595, 642
AspLEI GCGC 1 cut(s) 508
AspS9I GGNCC 1 cut(s) 49
AsuHPI GGTGA 2 cut(s) 86, 650
AsuII TTCGAA 1 cut(s) 579
AvaII GGWCC 1 cut(s) 49
AxyI CCTNAGG 1 cut(s) 287
BaeGI GKGCMC 2 cut(s) 492, 533
BalI TGGCCA 1 cut(s) 10
Bbv12I GWGCWC 1 cut(s) 492
BbvI GCAGC 1 cut(s) 438
BccI CCATC 2 cut(s) 19, 541
BciT130I CCWGG 1 cut(s) 95
BcoDI GTCTC 2 cut(s) 348, 608
BfmI CTRYAG 1 cut(s) 213
BisI GCNGC 1 cut(s) 427
BlpI GCTNAGC 1 cut(s) 438
BlsI GCNGC 1 cut(s) 428
BmcAI AGTACT 1 cut(s) 433
Bme1390I CCNGG 1 cut(s) 95
Bme18I GGWCC 1 cut(s) 49
BmgT120I GGNCC 1 cut(s) 49
BmiI GGNNCC 1 cut(s) 51
BmrFI CCNGG 1 cut(s) 95
BmsI GCATC 1 cut(s) 599
BpmI CTGGAG 1 cut(s) 543
Bpu1102I GCTNAGC 1 cut(s) 438
Bpu14I TTCGAA 1 cut(s) 579
BsaJI CCNNGG 2 cut(s) 45, 537
BsaXI ACNNNNNCTCC 2 cut(s) 533, 563
Bsc4I CCNNNNNNNGG 1 cut(s) 538
Bse1I ACTGG 2 cut(s) 526, 600
Bse21I CCTNAGG 1 cut(s) 287
Bse3DI GCAATG 1 cut(s) 28
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 2 cut(s) 45, 537
BseGI GGATG 1 cut(s) 533
BseLI CCNNNNNNNGG 1 cut(s) 538
BseMI GCAATG 1 cut(s) 28
BseMII CTCAG 2 cut(s) 314, 619
BseNI ACTGG 2 cut(s) 526, 600
BseSI GKGCMC 2 cut(s) 492, 533
BseXI GCAGC 1 cut(s) 438
BshFI GGCC 1 cut(s) 10
BsiHKAI GWGCWC 1 cut(s) 492
BslFI GGGAC 2 cut(s) 35, 460
BslI CCNNNNNNNGG 1 cut(s) 538
BsmAI GTCTC 2 cut(s) 348, 608
BsmFI GGGAC 2 cut(s) 35, 460
BsnI GGCC 1 cut(s) 10
Bsp119I TTCGAA 1 cut(s) 579
Bsp1286I GDGCHC 2 cut(s) 492, 533
Bsp1720I GCTNAGC 1 cut(s) 438
Bsp19I CCATGG 1 cut(s) 537
BspANI GGCC 1 cut(s) 10
BspCNI CTCAG 2 cut(s) 315, 618
BspLI GGNNCC 1 cut(s) 51
BspMAI CTGCAG 1 cut(s) 217
BspT104I TTCGAA 1 cut(s) 579
BsrDI GCAATG 1 cut(s) 28
BsrI ACTGG 2 cut(s) 526, 600
BssECI CCNNGG 2 cut(s) 45, 537
BssT1I CCWWGG 1 cut(s) 537
Bst2UI CCWGG 1 cut(s) 95
Bst4CI ACNGT 3 cut(s) 226, 371, 682
BstBI TTCGAA 1 cut(s) 579
BstDEI CTNAG 4 cut(s) 287, 323, 438, 605
BstDSI CCRYGG 1 cut(s) 537
BstF5I GGATG 1 cut(s) 533
BstHHI GCGC 1 cut(s) 508
BstMAI GTCTC 2 cut(s) 348, 608
BstMWI GCNNNNNNNGC 2 cut(s) 336, 423
BstNI CCWGG 1 cut(s) 95
BstNSI RCATGY 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 93
BstSFI CTRYAG 1 cut(s) 213
BstSLI GKGCMC 2 cut(s) 492, 533
BstV1I GCAGC 1 cut(s) 438
Bsu36I CCTNAGG 1 cut(s) 287
BsuRI GGCC 1 cut(s) 10
BtgI CCRYGG 1 cut(s) 537
BtsCI GGATG 1 cut(s) 533
BtsI GCAGTG 1 cut(s) 666
BtsIMutI CAGTG 2 cut(s) 632, 666
CfoI GCGC 1 cut(s) 508
Cfr13I GGNCC 1 cut(s) 49
CseI GACGC 1 cut(s) 227
CsiI ACCWGGT 1 cut(s) 93
Csp6I GTAC 4 cut(s) 205, 394, 432, 514
CviAII CATG 6 cut(s) 6, 35, 196, 397, 538, 561
CviJI RGCY 9 cut(s) 10, 190, 285, 310, 330, 442, 470, 635, 703
CviKI_1 RGCY 9 cut(s) 10, 190, 285, 310, 330, 442, 470, 635, 703
CviQI GTAC 4 cut(s) 205, 394, 432, 514
DdeI CTNAG 4 cut(s) 287, 323, 438, 605
EaeI YGGCCR 1 cut(s) 8
Eco130I CCWWGG 1 cut(s) 537
Eco32I GATATC 1 cut(s) 280
Eco47I GGWCC 1 cut(s) 49
Eco81I CCTNAGG 1 cut(s) 287
EcoRII CCWGG 1 cut(s) 93
EcoRV GATATC 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 537
ErhI CCWWGG 1 cut(s) 537
FaeI CATG 6 cut(s) 9, 38, 199, 400, 541, 564
FaqI GGGAC 2 cut(s) 35, 460
FatI CATG 6 cut(s) 5, 34, 195, 396, 537, 560
Fnu4HI GCNGC 1 cut(s) 427
FokI GGATG 1 cut(s) 520
Fsp4HI GCNGC 1 cut(s) 427
GlaI GCGC 1 cut(s) 507
GluI GCNGC 1 cut(s) 427
GsuI CTGGAG 1 cut(s) 543
HaeIII GGCC 1 cut(s) 10
HgaI GACGC 1 cut(s) 227
HhaI GCGC 1 cut(s) 508
Hin1II CATG 6 cut(s) 9, 38, 199, 400, 541, 564
Hin6I GCGC 1 cut(s) 506
HinP1I GCGC 1 cut(s) 506
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HinfI GANTC 3 cut(s) 542, 664, 671
HphI GGTGA 2 cut(s) 86, 650
Hpy166II GTNNAC 4 cut(s) 118, 320, 490, 652
Hpy188I TCNGA 2 cut(s) 384, 608
Hpy188III TCNNGA 2 cut(s) 345, 668
Hpy8I GTNNAC 4 cut(s) 118, 320, 490, 652
HpyAV CCTTC 3 cut(s) 22, 262, 461
HpyCH4III ACNGT 3 cut(s) 226, 371, 682
HpyCH4V TGCA 5 cut(s) 34, 195, 215, 365, 490
HpyF10VI GCNNNNNNNGC 2 cut(s) 336, 423
HpyF3I CTNAG 4 cut(s) 287, 323, 438, 605
Hsp92II CATG 6 cut(s) 9, 38, 199, 400, 541, 564
HspAI GCGC 1 cut(s) 506
LpnPI CCDG 6 cut(s) 80, 107, 172, 507, 613, 621
Lsp1109I GCAGC 1 cut(s) 438
LweI GCATC 1 cut(s) 599
MabI ACCWGGT 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 549
MboII GAAGA 2 cut(s) 446, 681
MhlI GDGCHC 2 cut(s) 492, 533
MlsI TGGCCA 1 cut(s) 10
MluCI AATT 7 cut(s) 143, 182, 385, 574, 582, 595, 642
MluNI TGGCCA 1 cut(s) 10
MlyI GAGTC 1 cut(s) 551
MmeI TCCRAC 1 cut(s) 255
MnlI CCTC 4 cut(s) 55, 64, 195, 469
Mox20I TGGCCA 1 cut(s) 10
MscI TGGCCA 1 cut(s) 10
MseI TTAA 3 cut(s) 480, 518, 621
Msp20I TGGCCA 1 cut(s) 10
MspR9I CCNGG 1 cut(s) 95
MvaI CCWGG 1 cut(s) 95
MwoI GCNNNNNNNGC 2 cut(s) 336, 423
NcoI CCATGG 1 cut(s) 537
NlaIII CATG 6 cut(s) 9, 38, 199, 400, 541, 564
NlaIV GGNNCC 1 cut(s) 51
NmuCI GTSAC 1 cut(s) 549
NspI RCATGY 1 cut(s) 38
NspV TTCGAA 1 cut(s) 579
PcsI WCGNNNNNNNCGW 1 cut(s) 576
PfeI GAWTC 2 cut(s) 664, 671
PkrI GCNGC 1 cut(s) 428
PleI GAGTC 1 cut(s) 550
PpsI GAGTC 1 cut(s) 550
Psp6I CCWGG 1 cut(s) 93
PspGI CCWGG 1 cut(s) 93
PspN4I GGNNCC 1 cut(s) 51
PspPI GGNCC 1 cut(s) 49
PstI CTGCAG 1 cut(s) 217
RsaI GTAC 4 cut(s) 206, 395, 433, 515
RsaNI GTAC 4 cut(s) 205, 394, 432, 514
SaqAI TTAA 3 cut(s) 480, 518, 621
SatI GCNGC 1 cut(s) 427
Sau96I GGNCC 1 cut(s) 49
ScaI AGTACT 1 cut(s) 433
SchI GAGTC 1 cut(s) 551
ScrFI CCNGG 1 cut(s) 95
SduI GDGCHC 2 cut(s) 492, 533
SetI ASST 6 cut(s) 33, 96, 137, 206, 332, 472
SexAI ACCWGGT 1 cut(s) 93
SfaNI GCATC 1 cut(s) 599
SfcI CTRYAG 1 cut(s) 213
SfuI TTCGAA 1 cut(s) 579
SinI GGWCC 1 cut(s) 49
Sse9I AATT 7 cut(s) 143, 182, 385, 574, 582, 595, 642
StyD4I CCNGG 1 cut(s) 93
StyI CCWWGG 1 cut(s) 537
TaaI ACNGT 3 cut(s) 226, 371, 682
TaqI TCGA 7 cut(s) 66, 100, 177, 346, 579, 646, 692
TaqII GACCGA 1 cut(s) 37
TasI AATT 7 cut(s) 143, 182, 385, 574, 582, 595, 642
TatI WGTACW 3 cut(s) 393, 431, 513
TfiI GAWTC 2 cut(s) 664, 671
Tru1I TTAA 3 cut(s) 480, 518, 621
Tru9I TTAA 3 cut(s) 480, 518, 621
TscAI CASTG 2 cut(s) 632, 666
TseFI GTSAC 1 cut(s) 549
TseI GCWGC 1 cut(s) 426
Tsp45I GTSAC 1 cut(s) 549
TspDTI ATGAA 1 cut(s) 549
TspRI CASTG 2 cut(s) 632, 666
VneI GTGCAC 1 cut(s) 488
VpaK11BI GGWCC 1 cut(s) 49
XapI RAATTY 6 cut(s) 182, 385, 574, 582, 595, 642
XceI RCATGY 1 cut(s) 38
ZrmI AGTACT 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.