Rh2BG009200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000428
Physical Location & Seq
Forward (+)
620922 .. 625438
4517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG009200.1

Sequence Viewer

Length: 450 bp
ATGGTGTTAGATCTCAGCCTTAGATCTAAACCTGGGCTAGCATACTACAACATGTCCTCGGTCTTTCTCGAACGAAATTATATAACTACCTTGAATTTGGAATGTGTGAGAATGAACCTAGGAAATCGTGGTATAAAACTTCCATTGTTGAGAACTATGTCCTTCAAAAGTGTGGAAGTGGACTCGCAAGATTCTCTCACACGTTTGGTTTCATCGTGCCCTAACATTGTGAATTTGTCATTGAATTTGAAGTACGCTACTCATGAAAAGTTTTTCTTATCGTTAGAGACTCTTCTGGGTTTGAAGTATATAACTACTTTACATTTGGAGAATATGAAAATAAAGAGTGATACTGATGATAGGAGGCGTGATGAGCTAAGTTTGCATCTTGCTGCTGCTAGGAAAAGAAATGCATTTCATAATCATCCAAAAATTGGGGCTTTCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

17.11

Weight (kDa)

9.61

Isoelectric Point (pI)

43.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 434
AcsI RAATTY 3 cut(s) 94, 232, 244
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 1 cut(s) 434
AflIII ACRYGT 2 cut(s) 51, 200
AgsI TTSAA 5 cut(s) 94, 166, 244, 250, 304
AjnI CCWGG 1 cut(s) 31
AluBI AGCT 1 cut(s) 376
AluI AGCT 1 cut(s) 376
Alw26I GTCTC 1 cut(s) 281
ApeKI GCWGC 2 cut(s) 392, 395
ApoI RAATTY 3 cut(s) 94, 232, 244
AspA2I CCTAGG 1 cut(s) 118
AsuNHI GCTAGC 1 cut(s) 37
AvrII CCTAGG 1 cut(s) 118
BaeGI GKGCMC 1 cut(s) 221
BbvI GCAGC 2 cut(s) 379, 382
BciT130I CCWGG 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 281
BfaI CTAG 3 cut(s) 38, 119, 399
BglII AGATCT 2 cut(s) 10, 23
BisI GCNGC 2 cut(s) 393, 396
BlnI CCTAGG 1 cut(s) 118
BlsI GCNGC 2 cut(s) 394, 397
Bme1390I CCNGG 1 cut(s) 33
BmrFI CCNGG 1 cut(s) 33
BmsI GCATC 1 cut(s) 394
BmtI GCTAGC 1 cut(s) 41
BsaJI CCNNGG 3 cut(s) 32, 57, 118
Bsc4I CCNNNNNNNGG 1 cut(s) 434
BseBI CCWGG 1 cut(s) 33
BseDI CCNNGG 3 cut(s) 32, 57, 118
BseGI GGATG 1 cut(s) 424
BseLI CCNNNNNNNGG 1 cut(s) 434
BseMII CTCAG 1 cut(s) 28
BseSI GKGCMC 1 cut(s) 221
BseXI GCAGC 2 cut(s) 379, 382
BslI CCNNNNNNNGG 1 cut(s) 434
BsmAI GTCTC 1 cut(s) 281
Bsp1286I GDGCHC 1 cut(s) 221
Bsp143I GATC 2 cut(s) 10, 23
BspCNI CTCAG 1 cut(s) 27
BspHI TCATGA 1 cut(s) 262
BspOI GCTAGC 1 cut(s) 41
BssECI CCNNGG 3 cut(s) 32, 57, 118
BssMI GATC 2 cut(s) 10, 23
BssT1I CCWWGG 1 cut(s) 118
Bst2UI CCWGG 1 cut(s) 33
Bst6I CTCTTC 1 cut(s) 297
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 3 cut(s) 14, 20, 377
BstF5I GGATG 1 cut(s) 424
BstKTI GATC 2 cut(s) 13, 26
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 2 cut(s) 10, 23
BstMWI GCNNNNNNNGC 2 cut(s) 373, 382
BstNI CCWGG 1 cut(s) 33
BstNSI RCATGY 1 cut(s) 55
BstSCI CCNGG 1 cut(s) 31
BstSLI GKGCMC 1 cut(s) 221
BstV1I GCAGC 2 cut(s) 379, 382
BstX2I RGATCY 2 cut(s) 10, 23
BstYI RGATCY 2 cut(s) 10, 23
BtsCI GGATG 1 cut(s) 424
Cac8I GCNNGC 1 cut(s) 39
CciI TCATGA 1 cut(s) 262
Csp6I GTAC 1 cut(s) 253
CviAII CATG 2 cut(s) 52, 263
CviJI RGCY 4 cut(s) 18, 37, 376, 440
CviKI_1 RGCY 4 cut(s) 18, 37, 376, 440
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 3 cut(s) 14, 20, 377
DpnI GATC 2 cut(s) 12, 25
DpnII GATC 2 cut(s) 10, 23
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Eco130I CCWWGG 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 31
EcoT14I CCWWGG 1 cut(s) 118
EcoT22I ATGCAT 1 cut(s) 415
ErhI CCWWGG 1 cut(s) 118
FaeI CATG 2 cut(s) 55, 266
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FatI CATG 2 cut(s) 51, 262
Fnu4HI GCNGC 2 cut(s) 393, 396
FokI GGATG 1 cut(s) 411
Fsp4HI GCNGC 2 cut(s) 393, 396
FspBI CTAG 3 cut(s) 38, 119, 399
GluI GCNGC 2 cut(s) 393, 396
Hin1II CATG 2 cut(s) 55, 266
HinfI GANTC 3 cut(s) 182, 191, 289
Hpy166II GTNNAC 1 cut(s) 181
Hpy188III TCNNGA 2 cut(s) 68, 263
Hpy8I GTNNAC 1 cut(s) 181
HpyAV CCTTC 1 cut(s) 172
HpyCH4IV ACGT 1 cut(s) 202
HpyCH4V TGCA 2 cut(s) 385, 413
HpyF10VI GCNNNNNNNGC 2 cut(s) 373, 382
HpyF3I CTNAG 3 cut(s) 14, 20, 377
HpySE526I ACGT 1 cut(s) 202
Hsp92II CATG 2 cut(s) 55, 266
Kzo9I GATC 2 cut(s) 10, 23
LpnPI CCDG 3 cut(s) 18, 45, 281
Lsp1109I GCAGC 2 cut(s) 379, 382
LweI GCATC 1 cut(s) 394
MaeI CTAG 3 cut(s) 38, 119, 399
MaeII ACGT 1 cut(s) 202
MalI GATC 2 cut(s) 12, 25
MboI GATC 2 cut(s) 10, 23
MboII GAAGA 1 cut(s) 284
MflI RGATCY 2 cut(s) 10, 23
MhlI GDGCHC 1 cut(s) 221
MluCI AATT 5 cut(s) 76, 94, 232, 244, 432
MlyI GAGTC 2 cut(s) 176, 283
MnlI CCTC 2 cut(s) 67, 357
Mph1103I ATGCAT 1 cut(s) 415
MseI TTAA 1 cut(s) 448
MspR9I CCNGG 1 cut(s) 33
MvaI CCWGG 1 cut(s) 33
MwoI GCNNNNNNNGC 2 cut(s) 373, 382
NdeII GATC 2 cut(s) 10, 23
NheI GCTAGC 1 cut(s) 37
NlaIII CATG 2 cut(s) 55, 266
NsiI ATGCAT 1 cut(s) 415
NspI RCATGY 1 cut(s) 55
PagI TCATGA 1 cut(s) 262
PciI ACATGT 1 cut(s) 51
PfeI GAWTC 1 cut(s) 191
PflMI CCANNNNNTGG 1 cut(s) 434
PkrI GCNGC 2 cut(s) 394, 397
PleI GAGTC 2 cut(s) 176, 283
PpsI GAGTC 2 cut(s) 176, 283
PscI ACATGT 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 31
PspGI CCWGG 1 cut(s) 31
PsuI RGATCY 2 cut(s) 10, 23
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
SaqAI TTAA 1 cut(s) 448
SatI GCNGC 2 cut(s) 393, 396
Sau3AI GATC 2 cut(s) 10, 23
SchI GAGTC 2 cut(s) 176, 283
ScrFI CCNGG 1 cut(s) 33
SduI GDGCHC 1 cut(s) 221
SetI ASST 5 cut(s) 34, 92, 120, 205, 378
SfaNI GCATC 1 cut(s) 394
Sse9I AATT 5 cut(s) 76, 94, 232, 244, 432
SspMI CTAG 3 cut(s) 38, 119, 399
StyD4I CCNGG 1 cut(s) 31
StyI CCWWGG 1 cut(s) 118
TaiI ACGT 1 cut(s) 205
TaqI TCGA 1 cut(s) 69
TaqII GACCGA 1 cut(s) 49
TasI AATT 5 cut(s) 76, 94, 232, 244, 432
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 1 cut(s) 448
Tru9I TTAA 1 cut(s) 448
TseI GCWGC 2 cut(s) 392, 395
TspDTI ATGAA 5 cut(s) 128, 201, 279, 350, 407
Van91I CCANNNNNTGG 1 cut(s) 434
XapI RAATTY 3 cut(s) 94, 232, 244
XceI RCATGY 1 cut(s) 55
XmaJI CCTAGG 1 cut(s) 118
XspI CTAG 3 cut(s) 38, 119, 399
Zsp2I ATGCAT 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.