Rmu_sc0040696.1_g000001

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0040696.1
OG0000428
Physical Location & Seq
Reverse (-)
1633 .. 2241
609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0040696.1_g000001.1.cds

Sequence Viewer

Length: 609 bp
atgggcgcccacacaatacttcccgacatacccgaggatgttctcaaacagatgtttcaattccttcccactaaagctgccatctgcatgagctgtctttctaagcaatggcaaggcgtccccatatcagaatttaacgagggtggtgagcatgacgatcgcaactttgatgagcacaggaagttcatcagcatgttaaaattccagttggtattatgtgagaaagagaaacaaagacaaaccacctgggataaattcagacttcgcatgacgagatactcagctaaagatgccactattgtatacaagtggttgaagttttcatttgagagaagcgtgaaagagttggatctcagccttagagggagtagggtgcaaaattactactacttgtgccggaccagctttatcaatgcaaaatctctaacgattctaaatttggagtctgtgagaattaagatcataatggacatcgacaaaggtgaggagtattatgagcaaagacccgagagccttcttcttcgttctttgaaaactatgtccctcaaagatgttcagtttgattccgatgctctcatctccctggtttgggactgccctttgctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

202

Amino Acids

23.85

Weight (kDa)

8.21

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 5
AccI GTMKAC 1 cut(s) 303
AclWI GGATC 1 cut(s) 357
AcsI RAATTY 4 cut(s) 131, 200, 254, 436
AcyI GRCGYC 2 cut(s) 6, 117
AfiI CCNNNNNNNGG 2 cut(s) 588, 589
AgsI TTSAA 3 cut(s) 59, 316, 532
AjnI CCWGG 2 cut(s) 245, 582
AluBI AGCT 4 cut(s) 77, 93, 284, 405
AluI AGCT 4 cut(s) 77, 93, 284, 405
Alw21I GWGCWC 1 cut(s) 177
AlwI GGATC 1 cut(s) 357
Ama87I CYCGRG 2 cut(s) 32, 506
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 4 cut(s) 131, 200, 254, 436
AspLEI GCGC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 399
AsuHPI GGTGA 2 cut(s) 158, 494
AvaI CYCGRG 2 cut(s) 32, 506
AvaII GGWCC 1 cut(s) 399
BanI GGYRCC 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 64
BccI CCATC 1 cut(s) 89
BcgI CGANNNNNNTGC 2 cut(s) 140, 174
BciT130I CCWGG 2 cut(s) 247, 584
BfoI RGCGCY 1 cut(s) 9
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
Bme1390I CCNGG 2 cut(s) 247, 584
Bme18I GGWCC 1 cut(s) 399
BmeT110I CYCGRG 2 cut(s) 32, 506
BmgT120I GGNCC 1 cut(s) 399
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 2 cut(s) 247, 584
BmsI GCATC 2 cut(s) 280, 559
BsaHI GRCGYC 2 cut(s) 6, 117
BsaJI CCNNGG 3 cut(s) 33, 246, 582
Bsc4I CCNNNNNNNGG 2 cut(s) 588, 589
Bse1I ACTGG 1 cut(s) 205
Bse3DI GCAATG 1 cut(s) 113
BseBI CCWGG 2 cut(s) 247, 584
BseDI CCNNGG 3 cut(s) 33, 246, 582
BseGI GGATG 1 cut(s) 43
BseLI CCNNNNNNNGG 2 cut(s) 588, 589
BseMI GCAATG 1 cut(s) 113
BseMII CTCAG 2 cut(s) 294, 367
BseNI ACTGG 1 cut(s) 205
BseRI GAGGAG 1 cut(s) 500
BseXI GCAGC 1 cut(s) 64
Bsh1285I CGRYCG 1 cut(s) 160
BshNI GGYRCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 160
BsiHKAI GWGCWC 1 cut(s) 177
BsiHKCI CYCGRG 2 cut(s) 32, 506
BsiSI CCGG 1 cut(s) 397
BslFI GGGAC 3 cut(s) 104, 526, 605
BslI CCNNNNNNNGG 2 cut(s) 588, 589
BsmFI GGGAC 3 cut(s) 104, 526, 605
BsoBI CYCGRG 2 cut(s) 32, 506
Bsp1286I GDGCHC 1 cut(s) 177
Bsp143I GATC 3 cut(s) 157, 349, 459
BspCNI CTCAG 2 cut(s) 293, 366
BspLI GGNNCC 1 cut(s) 7
BspPI GGATC 1 cut(s) 357
BspT107I GGYRCC 1 cut(s) 5
BsrDI GCAATG 1 cut(s) 113
BsrI ACTGG 1 cut(s) 205
BssECI CCNNGG 3 cut(s) 33, 246, 582
BssMI GATC 3 cut(s) 157, 349, 459
BssNAI GTATAC 1 cut(s) 304
BssNI GRCGYC 2 cut(s) 6, 117
Bst1107I GTATAC 1 cut(s) 304
Bst2UI CCWGG 2 cut(s) 247, 584
BstACI GRCGYC 2 cut(s) 6, 117
BstDEI CTNAG 4 cut(s) 102, 280, 353, 359
BstF5I GGATG 1 cut(s) 43
BstH2I RGCGCY 1 cut(s) 9
BstHHI GCGC 1 cut(s) 8
BstKTI GATC 3 cut(s) 160, 352, 462
BstMBI GATC 3 cut(s) 157, 349, 459
BstMCI CGRYCG 1 cut(s) 160
BstMWI GCNNNNNNNGC 2 cut(s) 290, 402
BstNI CCWGG 2 cut(s) 247, 584
BstNSI RCATGY 1 cut(s) 196
BstSCI CCNGG 2 cut(s) 245, 582
BstV1I GCAGC 1 cut(s) 64
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
BstZ17I GTATAC 1 cut(s) 304
BtsCI GGATG 1 cut(s) 43
CfoI GCGC 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 399
CseI GACGC 1 cut(s) 106
CviAII CATG 4 cut(s) 88, 152, 193, 268
CviJI RGCY 6 cut(s) 77, 93, 284, 357, 405, 513
CviKI_1 RGCY 6 cut(s) 77, 93, 284, 357, 405, 513
DdeI CTNAG 4 cut(s) 102, 280, 353, 359
DinI GGCGCC 1 cut(s) 7
DpnI GATC 3 cut(s) 159, 351, 461
DpnII GATC 3 cut(s) 157, 349, 459
Eco47I GGWCC 1 cut(s) 399
Eco88I CYCGRG 2 cut(s) 32, 506
EcoRII CCWGG 2 cut(s) 245, 582
EgeI GGCGCC 1 cut(s) 7
EheI GGCGCC 1 cut(s) 7
FaeI CATG 4 cut(s) 91, 155, 196, 271
FaqI GGGAC 3 cut(s) 104, 526, 605
FatI CATG 4 cut(s) 87, 151, 192, 267
FblI GTMKAC 1 cut(s) 303
Fnu4HI GCNGC 1 cut(s) 78
FokI GGATG 1 cut(s) 50
Fsp4HI GCNGC 1 cut(s) 78
GlaI GCGC 1 cut(s) 7
GluI GCNGC 1 cut(s) 78
HaeII RGCGCY 1 cut(s) 9
HapII CCGG 1 cut(s) 397
HgaI GACGC 1 cut(s) 106
HhaI GCGC 1 cut(s) 8
Hin1I GRCGYC 2 cut(s) 6, 117
Hin1II CATG 4 cut(s) 91, 155, 196, 271
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HinfI GANTC 3 cut(s) 430, 443, 563
HpaII CCGG 1 cut(s) 397
HphI GGTGA 2 cut(s) 158, 494
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 4 cut(s) 130, 260, 568, 608
Hpy188III TCNNGA 1 cut(s) 23
Hpy8I GTNNAC 1 cut(s) 304
HpyAV CCTTC 2 cut(s) 74, 524
HpyCH4V TGCA 3 cut(s) 87, 376, 416
HpyF10VI GCNNNNNNNGC 2 cut(s) 290, 402
HpyF3I CTNAG 4 cut(s) 102, 280, 353, 359
Hsp92I GRCGYC 2 cut(s) 6, 117
Hsp92II CATG 4 cut(s) 91, 155, 196, 271
HspAI GCGC 1 cut(s) 6
KasI GGCGCC 1 cut(s) 5
Kzo9I GATC 3 cut(s) 157, 349, 459
LpnPI CCDG 8 cut(s) 163, 218, 232, 259, 410, 415, 569, 596
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 2 cut(s) 280, 559
MalI GATC 3 cut(s) 159, 351, 461
MboI GATC 3 cut(s) 157, 349, 459
MboII GAAGA 2 cut(s) 509, 512
MflI RGATCY 1 cut(s) 349
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 7 cut(s) 59, 131, 200, 254, 379, 436, 453
Mly113I GGCGCC 1 cut(s) 6
MlyI GAGTC 1 cut(s) 452
MmeI TCCRAC 1 cut(s) 327
MnlI CCTC 5 cut(s) 28, 133, 356, 478, 554
MseI TTAA 3 cut(s) 135, 197, 456
MslI CAYNNNNRTG 2 cut(s) 86, 191
MspI CCGG 1 cut(s) 397
MspR9I CCNGG 2 cut(s) 247, 584
MvaI CCWGG 2 cut(s) 247, 584
MwoI GCNNNNNNNGC 2 cut(s) 290, 402
NarI GGCGCC 1 cut(s) 6
NdeII GATC 3 cut(s) 157, 349, 459
NlaIII CATG 4 cut(s) 91, 155, 196, 271
NlaIV GGNNCC 1 cut(s) 7
NspI RCATGY 1 cut(s) 196
PfeI GAWTC 2 cut(s) 430, 563
PkrI GCNGC 1 cut(s) 79
Ple19I CGATCG 1 cut(s) 160
PleI GAGTC 1 cut(s) 451
PluTI GGCGCC 1 cut(s) 9
PpsI GAGTC 1 cut(s) 451
Psp6I CCWGG 2 cut(s) 245, 582
PspGI CCWGG 2 cut(s) 245, 582
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 399
PsuI RGATCY 1 cut(s) 349
PvuI CGATCG 1 cut(s) 160
RseI CAYNNNNRTG 2 cut(s) 86, 191
SaqAI TTAA 3 cut(s) 135, 197, 456
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 3 cut(s) 157, 349, 459
Sau96I GGNCC 1 cut(s) 399
SchI GAGTC 1 cut(s) 452
ScrFI CCNGG 2 cut(s) 247, 584
SduI GDGCHC 1 cut(s) 177
SetI ASST 6 cut(s) 79, 95, 248, 286, 407, 484
SfaNI GCATC 2 cut(s) 280, 559
SfoI GGCGCC 1 cut(s) 7
SinI GGWCC 1 cut(s) 399
SmiMI CAYNNNNRTG 2 cut(s) 86, 191
Sse9I AATT 7 cut(s) 59, 131, 200, 254, 379, 436, 453
SspDI GGCGCC 1 cut(s) 5
StyD4I CCNGG 2 cut(s) 245, 582
TaqI TCGA 1 cut(s) 474
TasI AATT 7 cut(s) 59, 131, 200, 254, 379, 436, 453
TfiI GAWTC 2 cut(s) 430, 563
Tru1I TTAA 3 cut(s) 135, 197, 456
Tru9I TTAA 3 cut(s) 135, 197, 456
TseI GCWGC 1 cut(s) 77
TspDTI ATGAA 2 cut(s) 175, 312
VpaK11BI GGWCC 1 cut(s) 399
XapI RAATTY 4 cut(s) 131, 200, 254, 436
XceI RCATGY 1 cut(s) 196
XmiI GTMKAC 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.