Rmu_sc0007813.1_g000006

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007813.1
OG0000428
Physical Location & Seq
Reverse (-)
18495 .. 19463
969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007813.1_g000006.1.cds

Sequence Viewer

Length: 969 bp
atgaaaaacttgttttacttgtctaggatggctcttgtgagtcttgtcaatgcaaaatctgtgactactctaaatttagagtatgtgagaatgaagaaaatctacaataagcatcctatatctgttggtctgcttccctctttgaaatccatgtccttcaagagggtgcattttgactacgaagctctcctctccttaatttctgagtgccctttcattgagcacttgtcactaacttcatgttctttccaaggggacatttatatgcggagttccagtctcaaatctttggaaattgaccgatgcgaggctcttttagttcgagtctatgaagctataaatcttaaatctctttcagttgtatcaggtatcggttcatctgaattttcgcagcttgagcaggtgatatttagagattgcctcaaattgaaatgtatgaacatacatgcttcgcacttgcgtttccttaatttagatggatgccataatgtgaaaggcacaatcgatgctccaaagctcgaatttttcaatttcgttggttacttgaagtgcaagttctctttgaaagctccaaatctgaggatgacccgcattgaactaatcgaaaattgggatagagaagcagccacttccaacaggcaatggaaacattttacaacactgagcgattttcttcaagaatttggtatatccaaaagtttgtacctctgtgtttctgattttaaggctgtcatatttccaaaagatttcagaaagactctgtcttctccaatatttccaaatctcgaagaactgtatttctcagcgaagattcctgcaagtaagatgagagatggcaaagagttggtggattcctttaaatggatggcaccttataaactggatattagatgtgtaccatggagcagcggattccttgaaatggatgacaccttattttcaagatattcgatgtttaccatggagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box LRR_2

Protein Analysis

322

Amino Acids

37.22

Weight (kDa)

8.93

Isoelectric Point (pI)

38.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 876
AarI CACCTGC 1 cut(s) 391
Acc36I ACCTGC 1 cut(s) 391
AccB1I GGYRCC 1 cut(s) 868
AciI CCGC 3 cut(s) 268, 589, 909
AcsI RAATTY 4 cut(s) 73, 383, 521, 680
AfaI GTAC 2 cut(s) 704, 897
AfiI CCNNNNNNNGG 4 cut(s) 162, 307, 861, 922
AluBI AGCT 5 cut(s) 185, 335, 394, 517, 569
AluI AGCT 5 cut(s) 185, 335, 394, 517, 569
Alw21I GWGCWC 1 cut(s) 225
Alw26I GTCTC 1 cut(s) 284
ApeKI GCWGC 3 cut(s) 391, 623, 906
ApoI RAATTY 4 cut(s) 73, 383, 521, 680
AsuHPI GGTGA 1 cut(s) 415
BaeGI GKGCMC 1 cut(s) 212
BanI GGYRCC 1 cut(s) 868
BarI GAAGNNNNNNTAC 2 cut(s) 86, 118
BbsI GAAGAC 1 cut(s) 756
Bbv12I GWGCWC 1 cut(s) 225
BbvI GCAGC 3 cut(s) 403, 635, 918
BccI CCATC 4 cut(s) 22, 470, 827, 859
BcoDI GTCTC 1 cut(s) 284
BfaI CTAG 1 cut(s) 24
BfuAI ACCTGC 1 cut(s) 391
BisI GCNGC 3 cut(s) 392, 624, 907
BlsI GCNGC 3 cut(s) 393, 625, 908
BmiI GGNNCC 1 cut(s) 870
BmsI GCATC 4 cut(s) 121, 293, 470, 496
BpiI GAAGAC 1 cut(s) 756
BplI GAGNNNNNCTC 2 cut(s) 405, 437
BpuEI CTTGAG 1 cut(s) 416
Bsa29I ATCGAT 1 cut(s) 504
BsaJI CCNNGG 3 cut(s) 250, 899, 960
BsaXI ACNNNNNCTCC 2 cut(s) 262, 292
Bsc4I CCNNNNNNNGG 4 cut(s) 162, 307, 861, 922
Bse1I ACTGG 2 cut(s) 276, 885
Bse3DI GCAATG 1 cut(s) 647
BseCI ATCGAT 1 cut(s) 504
BseDI CCNNGG 3 cut(s) 250, 899, 960
BseGI GGATG 6 cut(s) 33, 112, 485, 588, 870, 931
BseLI CCNNNNNNNGG 4 cut(s) 162, 307, 861, 922
BseMI GCAATG 1 cut(s) 647
BseMII CTCAG 4 cut(s) 195, 569, 653, 816
BseNI ACTGG 2 cut(s) 276, 885
BseRI GAGGAG 1 cut(s) 179
BseSI GKGCMC 1 cut(s) 212
BseXI GCAGC 3 cut(s) 403, 635, 918
BshNI GGYRCC 1 cut(s) 868
BshVI ATCGAT 1 cut(s) 504
BsiHKAI GWGCWC 1 cut(s) 225
BslFI GGGAC 1 cut(s) 269
BslI CCNNNNNNNGG 4 cut(s) 162, 307, 861, 922
BsmAI GTCTC 1 cut(s) 284
BsmFI GGGAC 1 cut(s) 269
Bsp1286I GDGCHC 2 cut(s) 212, 225
Bsp19I CCATGG 2 cut(s) 899, 960
BspACI CCGC 3 cut(s) 268, 589, 909
BspCNI CTCAG 4 cut(s) 196, 570, 654, 815
BspDI ATCGAT 1 cut(s) 504
BspLI GGNNCC 1 cut(s) 870
BspMI ACCTGC 1 cut(s) 391
BspT107I GGYRCC 1 cut(s) 868
BsrDI GCAATG 1 cut(s) 647
BsrI ACTGG 2 cut(s) 276, 885
BssECI CCNNGG 3 cut(s) 250, 899, 960
BssT1I CCWWGG 3 cut(s) 250, 899, 960
Bst4CI ACNGT 1 cut(s) 795
BstDEI CTNAG 4 cut(s) 204, 578, 662, 802
BstDSI CCRYGG 2 cut(s) 899, 960
BstENI CCTNNNNNAGG 1 cut(s) 160
BstF5I GGATG 6 cut(s) 33, 112, 485, 588, 870, 931
BstMAI GTCTC 1 cut(s) 284
BstMWI GCNNNNNNNGC 1 cut(s) 397
BstNSI RCATGY 1 cut(s) 449
BstSLI GKGCMC 1 cut(s) 212
BstV1I GCAGC 3 cut(s) 403, 635, 918
BstV2I GAAGAC 1 cut(s) 756
Bsu15I ATCGAT 1 cut(s) 504
BsuTUI ATCGAT 1 cut(s) 504
BtgI CCRYGG 2 cut(s) 899, 960
BtsCI GGATG 6 cut(s) 33, 112, 485, 588, 870, 931
BtsIMutI CAGTG 1 cut(s) 659
BveI ACCTGC 1 cut(s) 391
ClaI ATCGAT 1 cut(s) 504
Csp6I GTAC 2 cut(s) 703, 896
CviAII CATG 5 cut(s) 151, 240, 446, 900, 961
CviJI RGCY 9 cut(s) 32, 185, 311, 335, 394, 517, 569, 626, 728
CviKI_1 RGCY 9 cut(s) 32, 185, 311, 335, 394, 517, 569, 626, 728
CviQI GTAC 2 cut(s) 703, 896
DdeI CTNAG 4 cut(s) 204, 578, 662, 802
DraI TTTAAA 1 cut(s) 859
Eco130I CCWWGG 3 cut(s) 250, 899, 960
EcoNI CCTNNNNNAGG 1 cut(s) 160
EcoT14I CCWWGG 3 cut(s) 250, 899, 960
ErhI CCWWGG 3 cut(s) 250, 899, 960
FaeI CATG 5 cut(s) 154, 243, 449, 903, 964
FaqI GGGAC 1 cut(s) 269
FatI CATG 5 cut(s) 150, 239, 445, 899, 960
FauI CCCGC 1 cut(s) 596
Fnu4HI GCNGC 3 cut(s) 392, 624, 907
FokI GGATG 6 cut(s) 40, 99, 492, 595, 877, 938
Fsp4HI GCNGC 3 cut(s) 392, 624, 907
FspBI CTAG 1 cut(s) 24
GluI GCNGC 3 cut(s) 392, 624, 907
Hin1II CATG 5 cut(s) 154, 243, 449, 903, 964
HinfI GANTC 6 cut(s) 40, 324, 757, 811, 851, 912
HphI GGTGA 1 cut(s) 415
Hpy166II GTNNAC 2 cut(s) 896, 957
Hpy188I TCNGA 5 cut(s) 205, 382, 579, 718, 752
Hpy188III TCNNGA 4 cut(s) 160, 677, 785, 942
Hpy8I GTNNAC 2 cut(s) 896, 957
HpyAV CCTTC 1 cut(s) 166
HpyCH4III ACNGT 1 cut(s) 795
HpyCH4V TGCA 4 cut(s) 53, 169, 552, 818
HpyF10VI GCNNNNNNNGC 1 cut(s) 397
HpyF3I CTNAG 4 cut(s) 204, 578, 662, 802
Hsp92II CATG 5 cut(s) 154, 243, 449, 903, 964
LmnI GCTCC 3 cut(s) 514, 574, 903
LpnPI CCDG 6 cut(s) 289, 351, 386, 622, 828, 866
Lsp1109I GCAGC 3 cut(s) 403, 635, 918
LweI GCATC 4 cut(s) 121, 293, 470, 496
MaeI CTAG 1 cut(s) 24
MaeIII GTNAC 3 cut(s) 61, 228, 539
MboII GAAGA 5 cut(s) 106, 665, 756, 800, 820
MhlI GDGCHC 2 cut(s) 212, 225
MlyI GAGTC 3 cut(s) 49, 333, 751
MmeI TCCRAC 1 cut(s) 657
MnlI CCTC 7 cut(s) 148, 156, 200, 301, 431, 573, 716
MseI TTAA 5 cut(s) 197, 345, 468, 723, 858
MslI CAYNNNNRTG 1 cut(s) 263
MspA1I CMGCKG 1 cut(s) 909
MwoI GCNNNNNNNGC 1 cut(s) 397
NcoI CCATGG 2 cut(s) 899, 960
NlaIII CATG 5 cut(s) 154, 243, 449, 903, 964
NlaIV GGNNCC 1 cut(s) 870
NmuCI GTSAC 2 cut(s) 61, 228
NspI RCATGY 1 cut(s) 449
PaqCI CACCTGC 1 cut(s) 391
PfeI GAWTC 3 cut(s) 811, 851, 912
PflFI GACNNNGTC 1 cut(s) 760
PkrI GCNGC 3 cut(s) 393, 625, 908
PleI GAGTC 3 cut(s) 48, 332, 751
PpsI GAGTC 3 cut(s) 48, 332, 751
PsiI TTATAA 1 cut(s) 876
PspN4I GGNNCC 1 cut(s) 870
PsyI GACNNNGTC 1 cut(s) 760
RsaI GTAC 2 cut(s) 704, 897
RsaNI GTAC 2 cut(s) 703, 896
RseI CAYNNNNRTG 1 cut(s) 263
SaqAI TTAA 5 cut(s) 197, 345, 468, 723, 858
SatI GCNGC 3 cut(s) 392, 624, 907
SchI GAGTC 3 cut(s) 49, 333, 751
SduI GDGCHC 2 cut(s) 212, 225
SfaNI GCATC 4 cut(s) 121, 293, 470, 496
SmiMI CAYNNNNRTG 1 cut(s) 263
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
SsiI CCGC 3 cut(s) 268, 589, 909
SspI AATATT 1 cut(s) 774
SspMI CTAG 1 cut(s) 24
StyI CCWWGG 3 cut(s) 250, 899, 960
TaaI ACNGT 1 cut(s) 795
TaqI TCGA 6 cut(s) 322, 504, 519, 603, 786, 950
TaqII GACCGA 1 cut(s) 315
TfiI GAWTC 3 cut(s) 811, 851, 912
Tru1I TTAA 5 cut(s) 197, 345, 468, 723, 858
Tru9I TTAA 5 cut(s) 197, 345, 468, 723, 858
TscAI CASTG 1 cut(s) 666
TseFI GTSAC 2 cut(s) 61, 228
TseI GCWGC 3 cut(s) 391, 623, 906
Tsp45I GTSAC 2 cut(s) 61, 228
TspDTI ATGAA 7 cut(s) 17, 107, 205, 228, 345, 366, 452
TspRI CASTG 1 cut(s) 666
Tth111I GACNNNGTC 1 cut(s) 760
XagI CCTNNNNNAGG 1 cut(s) 160
XapI RAATTY 4 cut(s) 73, 383, 521, 680
XceI RCATGY 1 cut(s) 449
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.