Rmu_sc0008490.1_g000002

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008490.1
OG0000428
Physical Location & Seq
Forward (+)
4096 .. 5475
1380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008490.1_g000002.1.cds

Sequence Viewer

Length: 1380 bp
atggctttagagttgcccgatcttgtcatccaccaaatcctccaattccttcccactaaatctgctgtgcgcttgagctttctttccaagcaatgggaaggtgtatggtctttggccccaataatagatttcgatgagggaggtgaggatggaaacaacaacctcagccaacataaaaggttcgtcaaaaacattctgagcaggtatttggaattccttgttgagaaagagaaagaaaaacaaggtttagaaaaattcaagcttcacatgacaaggtacttatctggagatgctagtatcgtaaccaaattgttgagttcttcatttgagagaggcgtgaaagagttagatatcagccttagagtaagtaaatcacagtgggatcattggagtggcatgaaaaactacaacaacttgtccccgatggagcttatcaatgcaaaatctgcggcccgtatgaaaaactactactacttttctcggacggctcttgccaatgcaaaatccttgactactctaaatctagggtatgttagaataaagaacattagctttaaggaatgctctacatccacatgtcttcttccctctttgaaatctatgtctctcaagaaggtccactttgacaaggaagctctcttctacttgatccgtgagtgctcttgcatcgaatatttgtcaataatttcatgttctttcaaagacggtgaatttcgggtctcgagttctagtctcaagtctttgcaagttgagcattgcgactcttttgcaattcaagttgatgacgctgtgaatcttgaatctctcacaattgtttcagatatcggtccacctcaacttccgaacttccatagcataatcttgaaagactgcttcaacttgaaatgtttgcacatatgtgctccgcaggtgaaagtattcgatttagatggatgccatgatgtgaaaggcacgatcgacgctccacttctagattctattactttcaagggttacttgagttccaaactttctctcaaagctccaaacttgagtatgacccgcatcgtactatttgacaaatggggcagcgaagcggccactttcaacagcaggccatggaaccattttacaacattgagcaattttcttgaagaatttggtagctccaaaactttggatctttacgtgagtgattttaaggcccttatgtttccgaaagatttcagaaagaccttgtcttctccaatattcccaagtctcaaaaagctttatttctcggtgaagaatccagctccaagaaagatgagcaaagagttgagcgattcgttgtattggatggcacctgatgtgctgttcattaaaaatctaccatggagaatcaggcacagacctctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box LRR_2

Protein Analysis

459

Amino Acids

52.44

Weight (kDa)

9.06

Isoelectric Point (pI)

39.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 898
Acc36I ACCTGC 2 cut(s) 192, 898
AccB1I GGYRCC 1 cut(s) 1321
AccB7I CCANNNNNTGG 1 cut(s) 93
AciI CCGC 4 cut(s) 449, 905, 1042, 1076
AclWI GGATC 3 cut(s) 390, 643, 1167
AcoI YGGCCR 1 cut(s) 1077
AcsI RAATTY 4 cut(s) 212, 254, 710, 1136
AfaI GTAC 2 cut(s) 278, 1050
AfiI CCNNNNNNNGG 1 cut(s) 93
AflIII ACRYGT 1 cut(s) 575
AleI CACNNNNGTG 1 cut(s) 897
AluBI AGCT 9 cut(s) 78, 262, 430, 552, 635, 1022, 1146, 1249, 1274
AluI AGCT 9 cut(s) 78, 262, 430, 552, 635, 1022, 1146, 1249, 1274
Alw21I GWGCWC 2 cut(s) 662, 904
Alw26I GTCTC 4 cut(s) 609, 724, 737, 1244
AlwI GGATC 3 cut(s) 390, 643, 1167
Ama87I CYCGRG 1 cut(s) 721
AoxI GGCC 5 cut(s) 114, 450, 1077, 1094, 1182
ApeKI GCWGC 1 cut(s) 1068
ApoI RAATTY 4 cut(s) 212, 254, 710, 1136
Asp700I GAANNNNTTC 2 cut(s) 917, 1202
AspLEI GCGC 1 cut(s) 72
AspS9I GGNCC 5 cut(s) 115, 451, 616, 827, 1183
AsuHPI GGTGA 4 cut(s) 155, 719, 922, 1273
AvaI CYCGRG 1 cut(s) 721
AvaII GGWCC 2 cut(s) 616, 827
BanI GGYRCC 1 cut(s) 1321
BbsI GAAGAC 2 cut(s) 572, 1212
Bbv12I GWGCWC 2 cut(s) 662, 904
BbvCI CCTCAGC 1 cut(s) 164
BbvI GCAGC 1 cut(s) 1080
BccI CCATC 4 cut(s) 143, 418, 923, 1312
BceAI ACGGC 1 cut(s) 501
BcgI CGANNNNNNTGC 2 cut(s) 749, 783
BcoDI GTCTC 4 cut(s) 609, 724, 737, 1244
BfaI CTAG 4 cut(s) 294, 524, 729, 971
BfuAI ACCTGC 2 cut(s) 192, 898
BisI GCNGC 3 cut(s) 450, 1069, 1077
BlsI GCNGC 3 cut(s) 451, 1070, 1078
Bme18I GGWCC 2 cut(s) 616, 827
BmeT110I CYCGRG 1 cut(s) 721
BmgT120I GGNCC 5 cut(s) 115, 451, 616, 827, 1183
BmiI GGNNCC 3 cut(s) 117, 1103, 1323
BmsI GCATC 4 cut(s) 280, 675, 923, 1053
BpiI GAAGAC 2 cut(s) 572, 1212
BpmI CTGGAG 1 cut(s) 306
Bpu10I CCTNAGC 1 cut(s) 164
BpuEI CTTGAG 5 cut(s) 94, 593, 719, 1018, 1051
BsaAI YACGTR 1 cut(s) 1168
BsaI GGTCTC 1 cut(s) 724
BsaJI CCNNGG 2 cut(s) 1097, 1352
Bsc4I CCNNNNNNNGG 1 cut(s) 93
Bse3DI GCAATG 2 cut(s) 98, 754
BseDI CCNNGG 2 cut(s) 1097, 1352
BseGI GGATG 5 cut(s) 27, 154, 569, 938, 1323
BseLI CCNNNNNNNGG 1 cut(s) 93
BseMI GCAATG 2 cut(s) 98, 754
BseMII CTCAG 2 cut(s) 178, 188
BseXI GCAGC 1 cut(s) 1080
Bsh1285I CGRYCG 1 cut(s) 957
BshFI GGCC 5 cut(s) 116, 452, 1079, 1096, 1184
BshNI GGYRCC 1 cut(s) 1321
BsiEI CGRYCG 1 cut(s) 957
BsiHKAI GWGCWC 2 cut(s) 662, 904
BsiHKCI CYCGRG 1 cut(s) 721
BslFI GGGAC 1 cut(s) 403
BslI CCNNNNNNNGG 1 cut(s) 93
BsmAI GTCTC 4 cut(s) 609, 724, 737, 1244
BsmFI GGGAC 1 cut(s) 403
BsmI GAATGC 1 cut(s) 566
BsnI GGCC 5 cut(s) 116, 452, 1079, 1096, 1184
Bso31I GGTCTC 1 cut(s) 724
BsoBI CYCGRG 1 cut(s) 721
Bsp1286I GDGCHC 2 cut(s) 662, 904
Bsp143I GATC 5 cut(s) 19, 382, 648, 954, 1159
Bsp19I CCATGG 2 cut(s) 1097, 1352
BspACI CCGC 4 cut(s) 449, 905, 1042, 1076
BspANI GGCC 5 cut(s) 116, 452, 1079, 1096, 1184
BspCNI CTCAG 2 cut(s) 177, 189
BspLI GGNNCC 3 cut(s) 117, 1103, 1323
BspMI ACCTGC 2 cut(s) 192, 898
BspPI GGATC 3 cut(s) 390, 643, 1167
BspT107I GGYRCC 1 cut(s) 1321
BspTNI GGTCTC 1 cut(s) 724
BsrDI GCAATG 2 cut(s) 98, 754
BssECI CCNNGG 2 cut(s) 1097, 1352
BssMI GATC 5 cut(s) 19, 382, 648, 954, 1159
BssT1I CCWWGG 2 cut(s) 1097, 1352
Bst4CI ACNGT 2 cut(s) 378, 707
Bst6I CTCTTC 1 cut(s) 644
BstAPI GCANNNNNTGC 1 cut(s) 446
BstBAI YACGTR 1 cut(s) 1168
BstC8I GCNNGC 1 cut(s) 1094
BstDEI CTNAG 3 cut(s) 164, 197, 359
BstDSI CCRYGG 2 cut(s) 1097, 1352
BstF5I GGATG 5 cut(s) 27, 154, 569, 938, 1323
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 5 cut(s) 22, 385, 651, 957, 1162
BstMAI GTCTC 4 cut(s) 609, 724, 737, 1244
BstMBI GATC 5 cut(s) 19, 382, 648, 954, 1159
BstMCI CGRYCG 1 cut(s) 957
BstMWI GCNNNNNNNGC 2 cut(s) 446, 751
BstNSI RCATGY 1 cut(s) 579
BstV1I GCAGC 1 cut(s) 1080
BstV2I GAAGAC 2 cut(s) 572, 1212
BstX2I RGATCY 1 cut(s) 1159
BstXI CCANNNNNNTGG 1 cut(s) 1156
BstYI RGATCY 1 cut(s) 1159
BsuRI GGCC 5 cut(s) 116, 452, 1079, 1096, 1184
BtgI CCRYGG 2 cut(s) 1097, 1352
BtsCI GGATG 5 cut(s) 27, 154, 569, 938, 1323
BtsIMutI CAGTG 1 cut(s) 383
BveI ACCTGC 2 cut(s) 192, 898
Cac8I GCNNGC 1 cut(s) 1094
CfoI GCGC 1 cut(s) 72
Cfr13I GGNCC 5 cut(s) 115, 451, 616, 827, 1183
CseI GACGC 2 cut(s) 794, 968
Csp6I GTAC 2 cut(s) 277, 1049
CviAII CATG 7 cut(s) 268, 397, 576, 690, 938, 1098, 1353
CviQI GTAC 2 cut(s) 277, 1049
DdeI CTNAG 3 cut(s) 164, 197, 359
DpnI GATC 5 cut(s) 21, 384, 650, 956, 1161
DpnII GATC 5 cut(s) 19, 382, 648, 954, 1159
EaeI YGGCCR 1 cut(s) 1077
Eam1104I CTCTTC 1 cut(s) 644
EarI CTCTTC 1 cut(s) 644
Eco130I CCWWGG 2 cut(s) 1097, 1352
Eco31I GGTCTC 1 cut(s) 724
Eco32I GATATC 2 cut(s) 352, 823
Eco47I GGWCC 2 cut(s) 616, 827
Eco88I CYCGRG 1 cut(s) 721
EcoO109I RGGNCCY 1 cut(s) 1183
EcoRI GAATTC 1 cut(s) 212
EcoRV GATATC 2 cut(s) 352, 823
EcoT14I CCWWGG 2 cut(s) 1097, 1352
ErhI CCWWGG 2 cut(s) 1097, 1352
FaeI CATG 7 cut(s) 271, 400, 579, 693, 941, 1101, 1356
FalI AAGNNNNNCTT 4 cut(s) 605, 637, 980, 1012
FaqI GGGAC 1 cut(s) 403
FatI CATG 7 cut(s) 267, 396, 575, 689, 937, 1097, 1352
FauI CCCGC 1 cut(s) 1049
FauNDI CATATG 1 cut(s) 896
Fnu4HI GCNGC 3 cut(s) 450, 1069, 1077
FokI GGATG 5 cut(s) 14, 161, 556, 945, 1330
Fsp4HI GCNGC 3 cut(s) 450, 1069, 1077
FspBI CTAG 4 cut(s) 294, 524, 729, 971
GlaI GCGC 1 cut(s) 71
GluI GCNGC 3 cut(s) 450, 1069, 1077
GsuI CTGGAG 1 cut(s) 306
HaeIII GGCC 5 cut(s) 116, 452, 1079, 1096, 1184
HgaI GACGC 2 cut(s) 794, 968
HhaI GCGC 1 cut(s) 72
Hin1II CATG 7 cut(s) 271, 400, 579, 693, 941, 1101, 1356
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HindIII AAGCTT 2 cut(s) 260, 1247
HinfI GANTC 7 cut(s) 761, 793, 800, 974, 1267, 1304, 1359
HphI GGTGA 4 cut(s) 155, 719, 922, 1273
Hpy166II GTNNAC 2 cut(s) 619, 830
Hpy188I TCNGA 6 cut(s) 198, 483, 820, 843, 1197, 1208
Hpy188III TCNNGA 7 cut(s) 285, 610, 721, 797, 862, 971, 1130
Hpy8I GTNNAC 2 cut(s) 619, 830
Hpy99I CGWCG 1 cut(s) 962
HpyAV CCTTC 3 cut(s) 59, 92, 607
HpyCH4III ACNGT 2 cut(s) 378, 707
HpyCH4IV ACGT 1 cut(s) 1167
HpyCH4V TGCA 6 cut(s) 440, 500, 666, 745, 770, 892
HpyF10VI GCNNNNNNNGC 2 cut(s) 446, 751
HpyF3I CTNAG 3 cut(s) 164, 197, 359
HpySE526I ACGT 1 cut(s) 1167
Hsp92II CATG 7 cut(s) 271, 400, 579, 693, 941, 1101, 1356
HspAI GCGC 1 cut(s) 70
Kzo9I GATC 5 cut(s) 19, 382, 648, 954, 1159
LmnI GCTCC 6 cut(s) 427, 907, 967, 1027, 1151, 1279
LpnPI CCDG 7 cut(s) 187, 270, 893, 1078, 1284, 1338, 1348
Lsp1109I GCAGC 1 cut(s) 1080
LweI GCATC 4 cut(s) 280, 675, 923, 1053
MaeI CTAG 4 cut(s) 294, 524, 729, 971
MaeII ACGT 1 cut(s) 1167
MaeIII GTNAC 2 cut(s) 301, 992
MalI GATC 5 cut(s) 21, 384, 650, 956, 1161
MboI GATC 5 cut(s) 19, 382, 648, 954, 1159
MboII GAAGA 7 cut(s) 312, 572, 575, 631, 1145, 1212, 1276
MfeI CAATTG 1 cut(s) 810
MflI RGATCY 1 cut(s) 1159
MhlI GDGCHC 2 cut(s) 662, 904
MlyI GAGTC 1 cut(s) 755
MnlI CCTC 8 cut(s) 50, 130, 134, 139, 173, 326, 598, 843
MroXI GAANNNNTTC 2 cut(s) 917, 1202
MseI TTAA 3 cut(s) 555, 1179, 1341
MslI CAYNNNNRTG 3 cut(s) 390, 574, 897
MunI CAATTG 1 cut(s) 810
Mva1269I GAATGC 1 cut(s) 566
MwoI GCNNNNNNNGC 2 cut(s) 446, 751
NcoI CCATGG 2 cut(s) 1097, 1352
NdeI CATATG 1 cut(s) 896
NdeII GATC 5 cut(s) 19, 382, 648, 954, 1159
NlaIII CATG 7 cut(s) 271, 400, 579, 693, 941, 1101, 1356
NlaIV GGNNCC 3 cut(s) 117, 1103, 1323
NspI RCATGY 1 cut(s) 579
OliI CACNNNNGTG 1 cut(s) 897
PaeR7I CTCGAG 1 cut(s) 721
PaqCI CACCTGC 1 cut(s) 898
PciI ACATGT 1 cut(s) 575
PctI GAATGC 1 cut(s) 566
PdmI GAANNNNTTC 2 cut(s) 917, 1202
PfeI GAWTC 6 cut(s) 793, 800, 974, 1267, 1304, 1359
PflFI GACNNNGTC 1 cut(s) 1216
PflMI CCANNNNNTGG 1 cut(s) 93
PkrI GCNGC 3 cut(s) 451, 1070, 1078
Ple19I CGATCG 1 cut(s) 957
PleI GAGTC 1 cut(s) 755
PpsI GAGTC 1 cut(s) 755
Ppu21I YACGTR 1 cut(s) 1168
PscI ACATGT 1 cut(s) 575
PspN4I GGNNCC 3 cut(s) 117, 1103, 1323
PspPI GGNCC 5 cut(s) 115, 451, 616, 827, 1183
PsuI RGATCY 1 cut(s) 1159
PsyI GACNNNGTC 1 cut(s) 1216
PvuI CGATCG 1 cut(s) 957
RsaI GTAC 2 cut(s) 278, 1050
RsaNI GTAC 2 cut(s) 277, 1049
RseI CAYNNNNRTG 3 cut(s) 390, 574, 897
SaqAI TTAA 3 cut(s) 555, 1179, 1341
SatI GCNGC 3 cut(s) 450, 1069, 1077
Sau3AI GATC 5 cut(s) 19, 382, 648, 954, 1159
Sau96I GGNCC 5 cut(s) 115, 451, 616, 827, 1183
SchI GAGTC 1 cut(s) 755
SduI GDGCHC 2 cut(s) 662, 904
SfaNI GCATC 4 cut(s) 280, 675, 923, 1053
Sfr274I CTCGAG 1 cut(s) 721
SinI GGWCC 2 cut(s) 616, 827
SlaI CTCGAG 1 cut(s) 721
SmiMI CAYNNNNRTG 3 cut(s) 390, 574, 897
SmlI CTYRAG 6 cut(s) 73, 608, 721, 734, 997, 1030
SmoI CTYRAG 6 cut(s) 73, 608, 721, 734, 997, 1030
SsiI CCGC 4 cut(s) 449, 905, 1042, 1076
SspI AATATT 2 cut(s) 674, 1230
SspMI CTAG 4 cut(s) 294, 524, 729, 971
StyI CCWWGG 2 cut(s) 1097, 1352
TaaI ACNGT 2 cut(s) 378, 707
TaiI ACGT 1 cut(s) 1170
TaqI TCGA 5 cut(s) 132, 669, 722, 921, 957
TaqII GACCGA 1 cut(s) 815
TauI GCSGC 2 cut(s) 452, 1079
TfiI GAWTC 6 cut(s) 793, 800, 974, 1267, 1304, 1359
Tru1I TTAA 3 cut(s) 555, 1179, 1341
Tru9I TTAA 3 cut(s) 555, 1179, 1341
TscAI CASTG 1 cut(s) 383
TseI GCWGC 1 cut(s) 1068
TspDTI ATGAA 5 cut(s) 312, 413, 473, 678, 1327
TspGWI ACGGA 1 cut(s) 641
TspRI CASTG 1 cut(s) 383
Tth111I GACNNNGTC 1 cut(s) 1216
Van91I CCANNNNNTGG 1 cut(s) 93
VpaK11BI GGWCC 2 cut(s) 616, 827
XapI RAATTY 4 cut(s) 212, 254, 710, 1136
XbaI TCTAGA 1 cut(s) 970
XceI RCATGY 1 cut(s) 579
XhoI CTCGAG 1 cut(s) 721
XmnI GAANNNNTTC 2 cut(s) 917, 1202
XspI CTAG 4 cut(s) 294, 524, 729, 971
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.