Rmu_sc0004896.1_g000001

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004896.1
OG0000428
Physical Location & Seq
Reverse (-)
1021 .. 1626
606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004896.1_g000001.1.cds

Sequence Viewer

Length: 606 bp
atgaagaagatcaagatgaccaaatccccatggtggtggacaagatacggcctcacttacccaaccttgttatccaccaaatctgccctccgcatgagctttctttccaaacaatgggaaggtgtgtggtctttgtcccctgttatagatttcgaccagggaggtacacacactgatgacgaggacaacataaagttcatcaacatcttggaaaggtatttggaattccgtctgaaagacaaacaactcttagataaattccggcttcacatgaggtatcatggagaaggtagaactgtgactatagtcgatatgtgggtaaggtttgcagttatgagaagcgtaaaagaactagatatcagccttggaagtatctggccagactactactacttatccttggaaaaccttggtggaaaatctatcacaacattaaatttggagtatgtagcaatcgataagatctctaacgagttgagccttccttccctgaaatatgtgtccctcaagactgtgcgcatggattactcggttatacatagattgatttcggagtgcccttccatgcatggagtatttgtcactaacttcatgttctctaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

201

Amino Acids

23.64

Weight (kDa)

9.04

Isoelectric Point (pI)

30.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 518
AccB7I CCANNNNNTGG 1 cut(s) 114
AciI CCGC 1 cut(s) 91
AcoI YGGCCR 1 cut(s) 377
AcsI RAATTY 3 cut(s) 224, 257, 436
AfaI GTAC 1 cut(s) 166
AfiI CCNNNNNNNGG 2 cut(s) 33, 114
AjnI CCWGG 1 cut(s) 156
AluBI AGCT 1 cut(s) 99
AluI AGCT 1 cut(s) 99
AoxI GGCC 2 cut(s) 49, 377
ApoI RAATTY 3 cut(s) 224, 257, 436
AspLEI GCGC 1 cut(s) 519
BaeGI GKGCMC 1 cut(s) 560
BalI TGGCCA 1 cut(s) 379
BceAI ACGGC 1 cut(s) 64
BciT130I CCWGG 1 cut(s) 158
BfaI CTAG 1 cut(s) 353
BfmI CTRYAG 1 cut(s) 303
BglII AGATCT 1 cut(s) 462
Bme1390I CCNGG 1 cut(s) 158
BmrFI CCNGG 1 cut(s) 158
BoxI GACNNNNGTC 1 cut(s) 305
BpuEI CTTGAG 1 cut(s) 491
Bsa29I ATCGAT 1 cut(s) 456
BsaJI CCNNGG 5 cut(s) 29, 157, 364, 399, 409
BsaXI ACNNNNNCTCC 2 cut(s) 564, 594
Bsc4I CCNNNNNNNGG 2 cut(s) 33, 114
BseBI CCWGG 1 cut(s) 158
BseCI ATCGAT 1 cut(s) 456
BseDI CCNNGG 5 cut(s) 29, 157, 364, 399, 409
BseLI CCNNNNNNNGG 2 cut(s) 33, 114
BseSI GKGCMC 1 cut(s) 560
BshFI GGCC 2 cut(s) 51, 379
BshVI ATCGAT 1 cut(s) 456
BsiSI CCGG 1 cut(s) 262
BslFI GGGAC 2 cut(s) 121, 487
BslI CCNNNNNNNGG 2 cut(s) 33, 114
BsmFI GGGAC 2 cut(s) 121, 487
BsnI GGCC 2 cut(s) 51, 379
Bsp1286I GDGCHC 1 cut(s) 560
Bsp143I GATC 2 cut(s) 9, 462
Bsp19I CCATGG 1 cut(s) 29
BspACI CCGC 1 cut(s) 91
BspANI GGCC 2 cut(s) 51, 379
BspDI ATCGAT 1 cut(s) 456
BssECI CCNNGG 5 cut(s) 29, 157, 364, 399, 409
BssMI GATC 2 cut(s) 9, 462
BssT1I CCWWGG 4 cut(s) 29, 364, 399, 409
Bst2UI CCWGG 1 cut(s) 158
Bst4CI ACNGT 2 cut(s) 298, 514
BstDEI CTNAG 1 cut(s) 250
BstDSI CCRYGG 1 cut(s) 29
BstHHI GCGC 1 cut(s) 519
BstKTI GATC 2 cut(s) 12, 465
BstMBI GATC 2 cut(s) 9, 462
BstNI CCWGG 1 cut(s) 158
BstPAI GACNNNNGTC 1 cut(s) 305
BstSCI CCNGG 1 cut(s) 156
BstSFI CTRYAG 1 cut(s) 303
BstSLI GKGCMC 1 cut(s) 560
BstX2I RGATCY 1 cut(s) 462
BstXI CCANNNNNNTGG 1 cut(s) 36
BstYI RGATCY 1 cut(s) 462
Bsu15I ATCGAT 1 cut(s) 456
BsuRI GGCC 2 cut(s) 51, 379
BsuTUI ATCGAT 1 cut(s) 456
BtgI CCRYGG 1 cut(s) 29
BtsIMutI CAGTG 1 cut(s) 171
CfoI GCGC 1 cut(s) 519
ClaI ATCGAT 1 cut(s) 456
Csp6I GTAC 1 cut(s) 165
CviAII CATG 8 cut(s) 30, 94, 271, 281, 520, 565, 569, 592
CviJI RGCY 6 cut(s) 51, 99, 265, 363, 379, 480
CviKI_1 RGCY 6 cut(s) 51, 99, 265, 363, 379, 480
CviQI GTAC 1 cut(s) 165
DdeI CTNAG 1 cut(s) 250
DpnI GATC 2 cut(s) 11, 464
DpnII GATC 2 cut(s) 9, 462
EaeI YGGCCR 1 cut(s) 377
Eco130I CCWWGG 4 cut(s) 29, 364, 399, 409
Eco32I GATATC 1 cut(s) 358
EcoRI GAATTC 1 cut(s) 224
EcoRII CCWGG 1 cut(s) 156
EcoRV GATATC 1 cut(s) 358
EcoT14I CCWWGG 4 cut(s) 29, 364, 399, 409
EcoT22I ATGCAT 1 cut(s) 570
ErhI CCWWGG 4 cut(s) 29, 364, 399, 409
FaeI CATG 8 cut(s) 33, 97, 274, 284, 523, 568, 572, 595
FaqI GGGAC 2 cut(s) 121, 487
FatI CATG 8 cut(s) 29, 93, 270, 280, 519, 564, 568, 591
FspAI RTGCGCAY 1 cut(s) 518
FspBI CTAG 1 cut(s) 353
FspI TGCGCA 1 cut(s) 518
GlaI GCGC 1 cut(s) 518
HaeIII GGCC 2 cut(s) 51, 379
HapII CCGG 1 cut(s) 262
HhaI GCGC 1 cut(s) 519
Hin1II CATG 8 cut(s) 33, 97, 274, 284, 523, 568, 572, 595
Hin6I GCGC 1 cut(s) 517
HinP1I GCGC 1 cut(s) 517
HpaII CCGG 1 cut(s) 262
Hpy166II GTNNAC 2 cut(s) 39, 167
Hpy188I TCNGA 2 cut(s) 234, 553
Hpy188III TCNNGA 2 cut(s) 13, 508
Hpy8I GTNNAC 2 cut(s) 39, 167
HpyAV CCTTC 5 cut(s) 113, 281, 491, 495, 570
HpyCH4III ACNGT 2 cut(s) 298, 514
HpyCH4V TGCA 2 cut(s) 329, 568
HpyF3I CTNAG 1 cut(s) 250
Hsp92II CATG 8 cut(s) 33, 97, 274, 284, 523, 568, 572, 595
HspAI GCGC 1 cut(s) 517
Kzo9I GATC 2 cut(s) 9, 462
LpnPI CCDG 7 cut(s) 143, 153, 170, 275, 361, 393, 503
MaeI CTAG 1 cut(s) 353
MaeIII GTNAC 2 cut(s) 298, 580
MalI GATC 2 cut(s) 11, 464
MboI GATC 2 cut(s) 9, 462
MboII GAAGA 2 cut(s) 16, 19
MflI RGATCY 1 cut(s) 462
MhlI GDGCHC 1 cut(s) 560
MlsI TGGCCA 1 cut(s) 379
MluCI AATT 4 cut(s) 224, 257, 436, 601
MluNI TGGCCA 1 cut(s) 379
MnlI CCTC 6 cut(s) 62, 98, 155, 175, 267, 515
Mox20I TGGCCA 1 cut(s) 379
Mph1103I ATGCAT 1 cut(s) 570
MscI TGGCCA 1 cut(s) 379
MseI TTAA 1 cut(s) 434
MslI CAYNNNNRTG 2 cut(s) 34, 174
Msp20I TGGCCA 1 cut(s) 379
MspI CCGG 1 cut(s) 262
MspR9I CCNGG 1 cut(s) 158
MvaI CCWGG 1 cut(s) 158
NcoI CCATGG 1 cut(s) 29
NdeII GATC 2 cut(s) 9, 462
NlaIII CATG 8 cut(s) 33, 97, 274, 284, 523, 568, 572, 595
NmuCI GTSAC 2 cut(s) 298, 580
NsbI TGCGCA 1 cut(s) 518
NsiI ATGCAT 1 cut(s) 570
PflMI CCANNNNNTGG 1 cut(s) 114
PshAI GACNNNNGTC 1 cut(s) 305
Psp6I CCWGG 1 cut(s) 156
PspGI CCWGG 1 cut(s) 156
PsuI RGATCY 1 cut(s) 462
RsaI GTAC 1 cut(s) 166
RsaNI GTAC 1 cut(s) 165
RseI CAYNNNNRTG 2 cut(s) 34, 174
SaqAI TTAA 1 cut(s) 434
Sau3AI GATC 2 cut(s) 9, 462
ScrFI CCNGG 1 cut(s) 158
SduI GDGCHC 1 cut(s) 560
SetI ASST 9 cut(s) 68, 101, 124, 166, 218, 278, 292, 326, 411
SfcI CTRYAG 1 cut(s) 303
SmiMI CAYNNNNRTG 2 cut(s) 34, 174
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
Sse9I AATT 4 cut(s) 224, 257, 436, 601
SsiI CCGC 1 cut(s) 91
SspMI CTAG 1 cut(s) 353
StyD4I CCNGG 1 cut(s) 156
StyI CCWWGG 4 cut(s) 29, 364, 399, 409
TaaI ACNGT 2 cut(s) 298, 514
TaqI TCGA 3 cut(s) 153, 309, 456
TasI AATT 4 cut(s) 224, 257, 436, 601
Tru1I TTAA 1 cut(s) 434
Tru9I TTAA 1 cut(s) 434
TscAI CASTG 1 cut(s) 178
TseFI GTSAC 2 cut(s) 298, 580
Tsp45I GTSAC 2 cut(s) 298, 580
TspDTI ATGAA 3 cut(s) 17, 187, 580
TspGWI ACGGA 1 cut(s) 218
TspRI CASTG 1 cut(s) 178
Van91I CCANNNNNTGG 1 cut(s) 114
XapI RAATTY 3 cut(s) 224, 257, 436
XspI CTAG 1 cut(s) 353
Zsp2I ATGCAT 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.