Rorug01G0302700

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000428
Physical Location & Seq
Forward (+)
41852537 .. 41853875
1339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0302700.1

Sequence Viewer

Length: 735 bp
ATGAAGATGAACACCCAAGTACTCCTCAGCCTCACCTTGGCCATATTCTTCGCAGGTGCACATGCAGCTACAATCACCTTCACCAACAACTGCCCCTACACCGTATGGCCAGGATCCCTCACCTCCGACCAACAACCCCAACTATCCACCACCGGCTTCGAGCTAGCACAGGGAGCCAAAAACGAGGTCACCACTCCAGTTCCATGGAAAGGACGCTTCTGGGCCCGAACCGGATGCTCCACCGCTGCCGACGGAAAGTTCTCCTGCGCCACAGCTGACTGCGCCTCAGGCCAGGTCACATGCAACGGCAACGGCGCAGTCCCACCGGCAACTCTAGTTGAAATCAACATCGTAGCTGACGGCGGTCAGGACTTCTACGACGTCAGCCTGGTCGACGGCTTCAACGTGCCCATGTCCGTGGCCCCTCAGGGTGGAACCGGCGACTGCCAGACCTCTACATGCCCGGCCGACGTGAACGCCGTCTGTCCGGCAGAGCTGCAACTGAAGGCCGCCGACGGGAGCGTGATCGCCTGCAAGAGCGCGTGTACAGCGTTCAACGAGCCACAGTACTGTTGCACACCTCCCAATGACACTCCCGAAACCTGTCCTCCCACAAACTACTCTCAGATCTTTGAAGACCAGTGCCCTCAGGCTTATAGCTACGCTTACGATGACAAGAACAGCTTGTTTACATGCTTCGGTGGACCTAACTATGCCATTACATTCTGTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box LRR_2

Protein Analysis

244

Amino Acids

25.68

Weight (kDa)

4.15

Isoelectric Point (pI)

39.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 29 - 244 1.3e-78 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 44
AatII GACGTC 1 cut(s) 384
Acc36I ACCTGC 1 cut(s) 44
AccI GTMKAC 1 cut(s) 393
AccII CGCG 1 cut(s) 542
AciI CCGC 3 cut(s) 243, 363, 510
AclWI GGATC 2 cut(s) 108, 121
AcoI YGGCCR 3 cut(s) 39, 107, 465
AcuI CTGAAG 1 cut(s) 524
AcyI GRCGYC 1 cut(s) 381
AfaI GTAC 3 cut(s) 21, 547, 569
AfiI CCNNNNNNNGG 4 cut(s) 37, 209, 431, 516
AgsI TTSAA 4 cut(s) 341, 403, 556, 635
AjiI CACGTC 1 cut(s) 472
AjnI CCWGG 3 cut(s) 109, 291, 387
AluBI AGCT 7 cut(s) 68, 163, 275, 356, 496, 660, 684
AluI AGCT 7 cut(s) 68, 163, 275, 356, 496, 660, 684
Alw21I GWGCWC 1 cut(s) 61
Alw44I GTGCAC 1 cut(s) 57
AlwI GGATC 2 cut(s) 108, 121
AoxI GGCC 7 cut(s) 39, 107, 222, 289, 420, 465, 507
ApaI GGGCCC 1 cut(s) 226
ApaLI GTGCAC 1 cut(s) 57
ApeKI GCWGC 3 cut(s) 65, 245, 496
ArsI GACNNNNNNTTYG 2 cut(s) 171, 203
AspLEI GCGC 4 cut(s) 269, 284, 317, 542
AspS9I GGNCC 4 cut(s) 222, 223, 421, 704
AsuC2I CCSGG 1 cut(s) 464
AsuHPI GGTGA 5 cut(s) 25, 67, 73, 112, 181
AsuNHI GCTAGC 1 cut(s) 163
AvaII GGWCC 1 cut(s) 704
AxyI CCTNAGG 3 cut(s) 286, 426, 648
BaeGI GKGCMC 4 cut(s) 61, 226, 411, 647
BalI TGGCCA 2 cut(s) 41, 109
BamHI GGATCC 1 cut(s) 113
BanII GRGCYC 1 cut(s) 226
BbsI GAAGAC 1 cut(s) 642
Bbv12I GWGCWC 1 cut(s) 61
BbvCI CCTCAGC 1 cut(s) 26
BbvI GCAGC 3 cut(s) 77, 232, 483
BceAI ACGGC 5 cut(s) 322, 328, 376, 412, 464
BcgI CGANNNNNNTGC 2 cut(s) 216, 250
BciT130I CCWGG 3 cut(s) 111, 293, 389
BcnI CCSGG 1 cut(s) 464
BfaI CTAG 2 cut(s) 164, 335
BfuAI ACCTGC 1 cut(s) 44
BglII AGATCT 1 cut(s) 627
BisI GCNGC 4 cut(s) 66, 246, 497, 510
BlsI GCNGC 4 cut(s) 67, 247, 498, 511
BmcAI AGTACT 2 cut(s) 21, 569
Bme1390I CCNGG 4 cut(s) 111, 293, 389, 464
Bme18I GGWCC 1 cut(s) 704
BmgBI CACGTC 1 cut(s) 472
BmgT120I GGNCC 4 cut(s) 222, 223, 421, 704
BmiI GGNNCC 5 cut(s) 115, 175, 224, 423, 436
BmrFI CCNGG 4 cut(s) 111, 293, 389, 464
BmsI GCATC 1 cut(s) 224
BmtI GCTAGC 1 cut(s) 167
BoxI GACNNNNGTC 1 cut(s) 363
BpiI GAAGAC 1 cut(s) 642
BpmI CTGGAG 1 cut(s) 180
Bpu10I CCTNAGC 1 cut(s) 26
BpuMI CCSGG 1 cut(s) 464
BsaHI GRCGYC 1 cut(s) 381
BsaJI CCNNGG 3 cut(s) 36, 203, 417
BsaWI WCCGGW 1 cut(s) 230
BsaXI ACNNNNNCTCC 2 cut(s) 592, 622
Bsc4I CCNNNNNNNGG 4 cut(s) 37, 209, 431, 516
Bse118I RCCGGY 3 cut(s) 152, 325, 437
Bse1I ACTGG 2 cut(s) 197, 640
Bse21I CCTNAGG 3 cut(s) 286, 426, 648
BseBI CCWGG 3 cut(s) 111, 293, 389
BseDI CCNNGG 3 cut(s) 36, 203, 417
BseGI GGATG 1 cut(s) 239
BseLI CCNNNNNNNGG 4 cut(s) 37, 209, 431, 516
BseMII CTCAG 5 cut(s) 40, 300, 440, 638, 662
BseNI ACTGG 2 cut(s) 197, 640
BseRI GAGGAG 1 cut(s) 14
BseSI GKGCMC 4 cut(s) 61, 226, 411, 647
BseX3I CGGCCG 1 cut(s) 465
BseXI GCAGC 3 cut(s) 77, 232, 483
Bsh1236I CGCG 1 cut(s) 542
Bsh1285I CGRYCG 1 cut(s) 468
BshFI GGCC 7 cut(s) 41, 109, 224, 291, 422, 467, 509
BsiEI CGRYCG 1 cut(s) 468
BsiHKAI GWGCWC 1 cut(s) 61
BsiSI CCGG 6 cut(s) 153, 231, 326, 438, 464, 488
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 4 cut(s) 37, 209, 431, 516
BsmFI GGGAC 1 cut(s) 305
BsnI GGCC 7 cut(s) 41, 109, 224, 291, 422, 467, 509
Bsp120I GGGCCC 1 cut(s) 222
Bsp1286I GDGCHC 4 cut(s) 61, 226, 411, 647
Bsp1407I TGTACA 1 cut(s) 545
Bsp143I GATC 3 cut(s) 113, 525, 627
Bsp19I CCATGG 1 cut(s) 203
BspACI CCGC 3 cut(s) 243, 363, 510
BspANI GGCC 7 cut(s) 41, 109, 224, 291, 422, 467, 509
BspCNI CTCAG 5 cut(s) 39, 299, 439, 637, 661
BspFNI CGCG 1 cut(s) 542
BspLI GGNNCC 5 cut(s) 115, 175, 224, 423, 436
BspMI ACCTGC 1 cut(s) 44
BspOI GCTAGC 1 cut(s) 167
BspPI GGATC 2 cut(s) 108, 121
BsrFI RCCGGY 3 cut(s) 152, 325, 437
BsrGI TGTACA 1 cut(s) 545
BsrI ACTGG 2 cut(s) 197, 640
BssAI RCCGGY 3 cut(s) 152, 325, 437
BssECI CCNNGG 3 cut(s) 36, 203, 417
BssMI GATC 3 cut(s) 113, 525, 627
BssNI GRCGYC 1 cut(s) 381
BssT1I CCWWGG 2 cut(s) 36, 203
Bst2UI CCWGG 3 cut(s) 111, 293, 389
Bst4CI ACNGT 3 cut(s) 103, 567, 572
BstACI GRCGYC 1 cut(s) 381
BstAUI TGTACA 1 cut(s) 545
BstC8I GCNNGC 2 cut(s) 165, 532
BstDEI CTNAG 5 cut(s) 26, 286, 426, 624, 648
BstDSI CCRYGG 2 cut(s) 203, 417
BstEII GGTNACC 1 cut(s) 187
BstF5I GGATG 1 cut(s) 239
BstFNI CGCG 1 cut(s) 542
BstHHI GCGC 4 cut(s) 269, 284, 317, 542
BstKTI GATC 3 cut(s) 116, 528, 630
BstMBI GATC 3 cut(s) 113, 525, 627
BstMCI CGRYCG 1 cut(s) 468
BstMWI GCNNNNNNNGC 5 cut(s) 65, 173, 281, 288, 548
BstNI CCWGG 3 cut(s) 111, 293, 389
BstNSI RCATGY 4 cut(s) 65, 303, 462, 696
BstPAI GACNNNNGTC 1 cut(s) 363
BstPI GGTNACC 1 cut(s) 187
BstSCI CCNGG 4 cut(s) 109, 291, 387, 462
BstSLI GKGCMC 4 cut(s) 61, 226, 411, 647
BstUI CGCG 1 cut(s) 542
BstV1I GCAGC 3 cut(s) 77, 232, 483
BstV2I GAAGAC 1 cut(s) 642
BstX2I RGATCY 2 cut(s) 113, 627
BstXI CCANNNNNNTGG 2 cut(s) 204, 418
BstYI RGATCY 2 cut(s) 113, 627
BstZI CGGCCG 1 cut(s) 465
Bsu36I CCTNAGG 3 cut(s) 286, 426, 648
BsuRI GGCC 7 cut(s) 41, 109, 224, 291, 422, 467, 509
BtgI CCRYGG 2 cut(s) 203, 417
BtrI CACGTC 1 cut(s) 472
BtsCI GGATG 1 cut(s) 239
BtsIMutI CAGTG 1 cut(s) 647
BveI ACCTGC 1 cut(s) 44
Cac8I GCNNGC 2 cut(s) 165, 532
CfoI GCGC 4 cut(s) 269, 284, 317, 542
Cfr10I RCCGGY 3 cut(s) 152, 325, 437
Cfr13I GGNCC 4 cut(s) 222, 223, 421, 704
CseI GACGC 1 cut(s) 222
Csp6I GTAC 3 cut(s) 20, 546, 568
CviAII CATG 7 cut(s) 62, 204, 300, 412, 459, 693, 732
CviQI GTAC 3 cut(s) 20, 546, 568
DdeI CTNAG 5 cut(s) 26, 286, 426, 624, 648
DpnI GATC 3 cut(s) 115, 527, 629
DpnII GATC 3 cut(s) 113, 525, 627
EaeI YGGCCR 3 cut(s) 39, 107, 465
EagI CGGCCG 1 cut(s) 465
EclXI CGGCCG 1 cut(s) 465
Eco130I CCWWGG 2 cut(s) 36, 203
Eco24I GRGCYC 1 cut(s) 226
Eco47I GGWCC 1 cut(s) 704
Eco52I CGGCCG 1 cut(s) 465
Eco57I CTGAAG 1 cut(s) 524
Eco81I CCTNAGG 3 cut(s) 286, 426, 648
Eco91I GGTNACC 1 cut(s) 187
EcoO65I GGTNACC 1 cut(s) 187
EcoRII CCWGG 3 cut(s) 109, 291, 387
EcoT14I CCWWGG 2 cut(s) 36, 203
EcoT38I GRGCYC 1 cut(s) 226
ErhI CCWWGG 2 cut(s) 36, 203
FaeI CATG 7 cut(s) 65, 207, 303, 415, 462, 696, 735
FalI AAGNNNNNCTT 2 cut(s) 668, 700
FaqI GGGAC 1 cut(s) 305
FatI CATG 7 cut(s) 61, 203, 299, 411, 458, 692, 731
FblI GTMKAC 1 cut(s) 393
Fnu4HI GCNGC 4 cut(s) 66, 246, 497, 510
FokI GGATG 1 cut(s) 246
FriOI GRGCYC 1 cut(s) 226
Fsp4HI GCNGC 4 cut(s) 66, 246, 497, 510
FspBI CTAG 2 cut(s) 164, 335
GlaI GCGC 4 cut(s) 268, 283, 316, 541
GluI GCNGC 4 cut(s) 66, 246, 497, 510
GsuI CTGGAG 1 cut(s) 180
HaeIII GGCC 7 cut(s) 41, 109, 224, 291, 422, 467, 509
HapII CCGG 6 cut(s) 153, 231, 326, 438, 464, 488
HgaI GACGC 1 cut(s) 222
HhaI GCGC 4 cut(s) 269, 284, 317, 542
Hin1I GRCGYC 1 cut(s) 381
Hin1II CATG 7 cut(s) 65, 207, 303, 415, 462, 696, 735
Hin6I GCGC 4 cut(s) 267, 282, 315, 540
HinP1I GCGC 4 cut(s) 267, 282, 315, 540
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HpaII CCGG 6 cut(s) 153, 231, 326, 438, 464, 488
HphI GGTGA 5 cut(s) 25, 67, 73, 112, 181
Hpy166II GTNNAC 6 cut(s) 59, 394, 475, 546, 690, 704
Hpy188I TCNGA 2 cut(s) 127, 627
Hpy188III TCNNGA 2 cut(s) 368, 596
Hpy8I GTNNAC 6 cut(s) 59, 394, 475, 546, 690, 704
Hpy99I CGWCG 5 cut(s) 254, 383, 398, 473, 518
HpyAV CCTTC 2 cut(s) 88, 499
HpyCH4III ACNGT 3 cut(s) 103, 567, 572
HpyCH4IV ACGT 3 cut(s) 381, 405, 471
HpyCH4V TGCA 6 cut(s) 59, 65, 303, 499, 534, 576
HpyF10VI GCNNNNNNNGC 5 cut(s) 65, 173, 281, 288, 548
HpyF3I CTNAG 5 cut(s) 26, 286, 426, 624, 648
HpySE526I ACGT 3 cut(s) 381, 405, 471
Hsp92I GRCGYC 1 cut(s) 381
Hsp92II CATG 7 cut(s) 65, 207, 303, 415, 462, 696, 735
HspAI GCGC 4 cut(s) 267, 282, 315, 540
Kzo9I GATC 3 cut(s) 113, 525, 627
LmnI GCTCC 3 cut(s) 173, 242, 519
Lsp1109I GCAGC 3 cut(s) 77, 232, 483
LweI GCATC 1 cut(s) 224
MaeI CTAG 2 cut(s) 164, 335
MaeII ACGT 3 cut(s) 381, 405, 471
MaeIII GTNAC 2 cut(s) 187, 295
MalI GATC 3 cut(s) 115, 527, 629
MboI GATC 3 cut(s) 113, 525, 627
MboII GAAGA 3 cut(s) 16, 40, 647
MflI RGATCY 2 cut(s) 113, 627
MhlI GDGCHC 4 cut(s) 61, 226, 411, 647
MlsI TGGCCA 2 cut(s) 41, 109
MluNI TGGCCA 2 cut(s) 41, 109
MmeI TCCRAC 1 cut(s) 150
Mox20I TGGCCA 2 cut(s) 41, 109
MscI TGGCCA 2 cut(s) 41, 109
MslI CAYNNNNRTG 1 cut(s) 416
Msp20I TGGCCA 2 cut(s) 41, 109
MspA1I CMGCKG 2 cut(s) 245, 275
MspI CCGG 6 cut(s) 153, 231, 326, 438, 464, 488
MspR9I CCNGG 4 cut(s) 111, 293, 389, 464
MvaI CCWGG 3 cut(s) 111, 293, 389
MvnI CGCG 1 cut(s) 542
MwoI GCNNNNNNNGC 5 cut(s) 65, 173, 281, 288, 548
NciI CCSGG 1 cut(s) 464
NcoI CCATGG 1 cut(s) 203
NdeII GATC 3 cut(s) 113, 525, 627
NheI GCTAGC 1 cut(s) 163
NlaIII CATG 7 cut(s) 65, 207, 303, 415, 462, 696, 735
NlaIV GGNNCC 5 cut(s) 115, 175, 224, 423, 436
NmuCI GTSAC 2 cut(s) 187, 295
NspI RCATGY 4 cut(s) 65, 303, 462, 696
PaqCI CACCTGC 1 cut(s) 44
PcsI WCGNNNNNNNCGW 2 cut(s) 402, 477
PkrI GCNGC 4 cut(s) 67, 247, 498, 511
PshAI GACNNNNGTC 1 cut(s) 363
Psp6I CCWGG 3 cut(s) 109, 291, 387
PspEI GGTNACC 1 cut(s) 187
PspGI CCWGG 3 cut(s) 109, 291, 387
PspN4I GGNNCC 5 cut(s) 115, 175, 224, 423, 436
PspOMI GGGCCC 1 cut(s) 222
PspPI GGNCC 4 cut(s) 222, 223, 421, 704
PsuI RGATCY 2 cut(s) 113, 627
PvuII CAGCTG 1 cut(s) 275
RsaI GTAC 3 cut(s) 21, 547, 569
RsaNI GTAC 3 cut(s) 20, 546, 568
RseI CAYNNNNRTG 1 cut(s) 416
SalI GTCGAC 1 cut(s) 392
SatI GCNGC 4 cut(s) 66, 246, 497, 510
Sau3AI GATC 3 cut(s) 113, 525, 627
Sau96I GGNCC 4 cut(s) 222, 223, 421, 704
ScaI AGTACT 2 cut(s) 21, 569
ScrFI CCNGG 4 cut(s) 111, 293, 389, 464
SduI GDGCHC 4 cut(s) 61, 226, 411, 647
SfaNI GCATC 1 cut(s) 224
SinI GGWCC 1 cut(s) 704
SmiMI CAYNNNNRTG 1 cut(s) 416
SsiI CCGC 3 cut(s) 243, 363, 510
SspMI CTAG 2 cut(s) 164, 335
StyD4I CCNGG 4 cut(s) 109, 291, 387, 462
StyI CCWWGG 2 cut(s) 36, 203
TaaI ACNGT 3 cut(s) 103, 567, 572
TaiI ACGT 3 cut(s) 384, 408, 474
TaqI TCGA 2 cut(s) 159, 393
TatI WGTACW 3 cut(s) 19, 545, 567
TauI GCSGC 1 cut(s) 512
TscAI CASTG 1 cut(s) 647
TseFI GTSAC 2 cut(s) 187, 295
TseI GCWGC 3 cut(s) 65, 245, 496
Tsp45I GTSAC 2 cut(s) 187, 295
TspDTI ATGAA 2 cut(s) 17, 23
TspGWI ACGGA 2 cut(s) 267, 406
TspRI CASTG 1 cut(s) 647
VneI GTGCAC 1 cut(s) 57
VpaK11BI GGWCC 1 cut(s) 704
XceI RCATGY 4 cut(s) 65, 303, 462, 696
XmiI GTMKAC 1 cut(s) 393
XspI CTAG 2 cut(s) 164, 335
ZraI GACGTC 1 cut(s) 382
ZrmI AGTACT 2 cut(s) 21, 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.