Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000428

Physical Location & Seq

Genomic Coordinates Reverse (-)

22169855 .. 22171118

Gene Structure 1264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG139000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGCAAGTGAGTGGCCCGGCTCTCTTCTACTTAATTTTGGGGTGTACTTCAGTTGAGCATTTGTCATTAACTTCATGTTCTTTTGACCCCCCGGTGTTTCTCATTTCAAGTTCTAGCCTCAAATCATTGGAAGTTAAGAATTGCAATTTGCAGCATATTCGAGTTGATGAAGCTGTAAATCTTGAATCTTTTATTCTTGTTTCTGAATTTTCTACCCTCAAGGGTGTGCTCTTGGATAAATCTTTCAAGTTGAGTTCTATGAAAATCCGTGATCAACACCTGAGTTACTTTGGTTTATCTGAATGCCATGATAGCTTGGAGGCCACAATCAATACTCCAAATCTGGTTCATTTTCTGTTCCAGGGTTCTATAAAGTCCAAAGTTTCTCTGTCAGCTCCCAATTTACAAATCGCTCACATCCTACTTAAGAAAGAGTTTTCCACCTTCAAGGGGCCATGGCAACATTTTGATATTTTGAGGGACTTTCTTGAAGCATTTAGTTGCTCCAAAAATATAACCTTCTTTATACGTGATTTCAAGGATATCATCTTTCCAGCAGATTTCAAAAGAACATTCCATCCACCATTGCCTAGTGTTGAGGGTGTCAAGGTTGTGATGTTGAATCCTCCGACAAAGGAAATAGAGAGTTCTAAGTTGAAGGTCTCCTTGGTTTGGATGGCCCCTTCTGCAGTGGAAATTGAATGTGATTCCCTATCTGAGCATCGAGGATTAAACATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TAF TAF6_C

Protein Analysis

246

Amino Acids

27.67

Weight (kDa)

6.5

Isoelectric Point (pI)

49.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At5g56370	PF24758	3 - 70	5.1e-07	FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1	PF23622	16 - 140	4.9e-08	At1g61320/AtMIF1, LRR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000428)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica	MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica	Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis	pycom17g10120
rosa_chinensis	RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora	Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii	Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa	Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha	Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana	Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	206
AcuI	CTGAAG	1 cut(s)	33
AfaI	GTAC	1 cut(s)	46
AfiI	CCNNNNNNNGG	2 cut(s)	450, 672
AflII	CTTAAG	1 cut(s)	425
AflIII	ACRYGT	1 cut(s)	735
AjnI	CCWGG	1 cut(s)	360
AjuI	GAANNNNNNNTTGG	2 cut(s)	650, 682
AloI	GAACNNNNNNTCC	2 cut(s)	562, 594
AluBI	AGCT	3 cut(s)	173, 315, 395
AluI	AGCT	3 cut(s)	173, 315, 395
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	1 cut(s)	667
AoxI	GGCC	4 cut(s)	13, 321, 452, 678
ApeKI	GCWGC	1 cut(s)	151
ApoI	RAATTY	1 cut(s)	206
AspS9I	GGNCC	3 cut(s)	14, 452, 679
AsuC2I	CCSGG	2 cut(s)	17, 92
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	2 cut(s)	585, 670
BcgI	CGANNNNNNTGC	2 cut(s)	140, 174
BciT130I	CCWGG	1 cut(s)	362
BclI	TGATCA	1 cut(s)	271
BcnI	CCSGG	2 cut(s)	17, 92
BcoDI	GTCTC	1 cut(s)	667
BfaI	CTAG	2 cut(s)	114, 591
BfmI	CTRYAG	1 cut(s)	687
BfrI	CTTAAG	1 cut(s)	425
BisI	GCNGC	1 cut(s)	152
BlsI	GCNGC	1 cut(s)	153
Bme1390I	CCNGG	3 cut(s)	17, 92, 362
BmgT120I	GGNCC	3 cut(s)	14, 452, 679
BmiI	GGNNCC	2 cut(s)	453, 681
BmrFI	CCNGG	3 cut(s)	17, 92, 362
BmsI	GCATC	1 cut(s)	730
BpuEI	CTTGAG	1 cut(s)	203
BpuMI	CCSGG	2 cut(s)	17, 92
BsaAI	YACGTR	1 cut(s)	530
BsaI	GGTCTC	1 cut(s)	667
BsaJI	CCNNGG	4 cut(s)	90, 361, 455, 666
Bsc4I	CCNNNNNNNGG	2 cut(s)	450, 672
Bse3DI	GCAATG	1 cut(s)	584
BseBI	CCWGG	1 cut(s)	362
BseDI	CCNNGG	4 cut(s)	90, 361, 455, 666
BseGI	GGATG	3 cut(s)	417, 577, 681
BseLI	CCNNNNNNNGG	2 cut(s)	450, 672
BseMI	GCAATG	1 cut(s)	584
BseMII	CTCAG	2 cut(s)	272, 708
BseXI	GCAGC	1 cut(s)	163
BshFI	GGCC	4 cut(s)	15, 323, 454, 680
BsiHKAI	GWGCWC	1 cut(s)	231
BsiSI	CCGG	2 cut(s)	17, 92
BslFI	GGGAC	1 cut(s)	494
BslI	CCNNNNNNNGG	2 cut(s)	450, 672
BsmAI	GTCTC	1 cut(s)	667
BsmFI	GGGAC	1 cut(s)	494
BsmI	GAATGC	1 cut(s)	308
BsnI	GGCC	4 cut(s)	15, 323, 454, 680
Bso31I	GGTCTC	1 cut(s)	667
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	1 cut(s)	271
Bsp19I	CCATGG	1 cut(s)	455
BspANI	GGCC	4 cut(s)	15, 323, 454, 680
BspCNI	CTCAG	2 cut(s)	273, 709
BspLI	GGNNCC	2 cut(s)	453, 681
BspMAI	CTGCAG	1 cut(s)	691
BspTI	CTTAAG	1 cut(s)	425
BspTNI	GGTCTC	1 cut(s)	667
BsrDI	GCAATG	1 cut(s)	584
BssECI	CCNNGG	4 cut(s)	90, 361, 455, 666
BssMI	GATC	1 cut(s)	271
BssT1I	CCWWGG	2 cut(s)	455, 666
Bst2UI	CCWGG	1 cut(s)	362
Bst6I	CTCTTC	1 cut(s)	29
BstAFI	CTTAAG	1 cut(s)	425
BstBAI	YACGTR	1 cut(s)	530
BstDEI	CTNAG	3 cut(s)	281, 651, 717
BstDSI	CCRYGG	1 cut(s)	455
BstF5I	GGATG	3 cut(s)	417, 577, 681
BstKTI	GATC	1 cut(s)	274
BstMAI	GTCTC	1 cut(s)	667
BstMBI	GATC	1 cut(s)	271
BstMWI	GCNNNNNNNGC	2 cut(s)	312, 686
BstNI	CCWGG	1 cut(s)	362
BstNSI	RCATGY	1 cut(s)	739
BstSCI	CCNGG	3 cut(s)	15, 90, 360
BstSFI	CTRYAG	1 cut(s)	687
BstV1I	GCAGC	1 cut(s)	163
BsuRI	GGCC	4 cut(s)	15, 323, 454, 680
BtgI	CCRYGG	1 cut(s)	455
BtsCI	GGATG	3 cut(s)	417, 577, 681
BtsI	GCAGTG	1 cut(s)	696
BtsIMutI	CAGTG	1 cut(s)	696
Cfr13I	GGNCC	3 cut(s)	14, 452, 679
Csp6I	GTAC	1 cut(s)	45
CviAII	CATG	4 cut(s)	75, 308, 456, 736
CviJI	RGCY	9 cut(s)	15, 20, 117, 173, 315, 323, 395, 454, 680
CviKI_1	RGCY	9 cut(s)	15, 20, 117, 173, 315, 323, 395, 454, 680
CviQI	GTAC	1 cut(s)	45
DdeI	CTNAG	3 cut(s)	281, 651, 717
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco130I	CCWWGG	2 cut(s)	455, 666
Eco31I	GGTCTC	1 cut(s)	667
Eco32I	GATATC	1 cut(s)	544
Eco57I	CTGAAG	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	360
EcoRV	GATATC	1 cut(s)	544
EcoT14I	CCWWGG	2 cut(s)	455, 666
ErhI	CCWWGG	2 cut(s)	455, 666
FaeI	CATG	4 cut(s)	78, 311, 459, 739
FaiI	YATR	9 cut(s)	76, 156, 260, 309, 371, 457, 515, 527, 737
FalI	AAGNNNNNCTT	2 cut(s)	650, 682
FaqI	GGGAC	1 cut(s)	494
FatI	CATG	4 cut(s)	74, 307, 455, 735
FbaI	TGATCA	1 cut(s)	271
Fnu4HI	GCNGC	1 cut(s)	152
FokI	GGATG	3 cut(s)	404, 564, 688
Fsp4HI	GCNGC	1 cut(s)	152
FspBI	CTAG	2 cut(s)	114, 591
GluI	GCNGC	1 cut(s)	152
HaeIII	GGCC	4 cut(s)	15, 323, 454, 680
HapII	CCGG	2 cut(s)	17, 92
Hin1II	CATG	4 cut(s)	78, 311, 459, 739
HinfI	GANTC	3 cut(s)	185, 622, 707
HpaII	CCGG	2 cut(s)	17, 92
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188I	TCNGA	4 cut(s)	205, 301, 630, 718
Hpy188III	TCNNGA	2 cut(s)	182, 488
Hpy8I	GTNNAC	1 cut(s)	45
HpyAV	CCTTC	4 cut(s)	454, 529, 652, 693
HpyCH4IV	ACGT	1 cut(s)	529
HpyCH4V	TGCA	4 cut(s)	4, 144, 151, 689
HpyF10VI	GCNNNNNNNGC	2 cut(s)	312, 686
HpyF3I	CTNAG	3 cut(s)	281, 651, 717
HpySE526I	ACGT	1 cut(s)	529
Hsp92II	CATG	4 cut(s)	78, 311, 459, 739
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	1 cut(s)	271
LmnI	GCTCC	2 cut(s)	400, 509
LpnPI	CCDG	7 cut(s)	30, 105, 293, 329, 347, 374, 567
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	1 cut(s)	730
MaeI	CTAG	2 cut(s)	114, 591
MaeII	ACGT	1 cut(s)	529
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MboII	GAAGA	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	6 cut(s)	33, 139, 145, 206, 400, 696
MmeI	TCCRAC	1 cut(s)	653
MnlI	CCTC	7 cut(s)	128, 227, 313, 471, 592, 636, 719
MseI	TTAA	5 cut(s)	32, 68, 135, 426, 731
MspCI	CTTAAG	1 cut(s)	425
MspI	CCGG	2 cut(s)	17, 92
MspR9I	CCNGG	3 cut(s)	17, 92, 362
Mva1269I	GAATGC	1 cut(s)	308
MvaI	CCWGG	1 cut(s)	362
MwoI	GCNNNNNNNGC	2 cut(s)	312, 686
NciI	CCSGG	2 cut(s)	17, 92
NcoI	CCATGG	1 cut(s)	455
NdeII	GATC	1 cut(s)	271
NlaIII	CATG	4 cut(s)	78, 311, 459, 739
NlaIV	GGNNCC	2 cut(s)	453, 681
NspI	RCATGY	1 cut(s)	739
PciI	ACATGT	1 cut(s)	735
PctI	GAATGC	1 cut(s)	308
PfeI	GAWTC	3 cut(s)	185, 622, 707
PkrI	GCNGC	1 cut(s)	153
Ppu21I	YACGTR	1 cut(s)	530
PscI	ACATGT	1 cut(s)	735
Psp6I	CCWGG	1 cut(s)	360
PspGI	CCWGG	1 cut(s)	360
PspN4I	GGNNCC	2 cut(s)	453, 681
PspPI	GGNCC	3 cut(s)	14, 452, 679
PstI	CTGCAG	1 cut(s)	691
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
SaqAI	TTAA	5 cut(s)	32, 68, 135, 426, 731
SatI	GCNGC	1 cut(s)	152
Sau3AI	GATC	1 cut(s)	271
Sau96I	GGNCC	3 cut(s)	14, 452, 679
ScrFI	CCNGG	3 cut(s)	17, 92, 362
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	9 cut(s)	175, 282, 317, 397, 446, 521, 532, 612, 663
SfaNI	GCATC	1 cut(s)	730
SfcI	CTRYAG	1 cut(s)	687
SmlI	CTYRAG	2 cut(s)	218, 425
SmoI	CTYRAG	2 cut(s)	218, 425
Sse9I	AATT	6 cut(s)	33, 139, 145, 206, 400, 696
SspMI	CTAG	2 cut(s)	114, 591
StyD4I	CCNGG	3 cut(s)	15, 90, 360
StyI	CCWWGG	2 cut(s)	455, 666
TaiI	ACGT	1 cut(s)	532
TaqI	TCGA	2 cut(s)	160, 724
TasI	AATT	6 cut(s)	33, 139, 145, 206, 400, 696
TatI	WGTACW	1 cut(s)	44
TfiI	GAWTC	3 cut(s)	185, 622, 707
Tru1I	TTAA	5 cut(s)	32, 68, 135, 426, 731
Tru9I	TTAA	5 cut(s)	32, 68, 135, 426, 731
TscAI	CASTG	1 cut(s)	696
TseI	GCWGC	1 cut(s)	151
TspDTI	ATGAA	4 cut(s)	63, 183, 275, 338
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	1 cut(s)	696
Vha464I	CTTAAG	1 cut(s)	425
XapI	RAATTY	1 cut(s)	206
XceI	RCATGY	1 cut(s)	739
XspI	CTAG	2 cut(s)	114, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.