RchiOBHm_Chr2g0096151

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000428
Physical Location & Seq
Reverse (-)
9029866 .. 9031335
1470 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47112

Sequence Viewer

Length: 1419 bp
ATGGCTGTGGACAAATTGCTACCTCGCCTTCCAGACCTTATTGTTCACAAGATTTTCCGACTCATTCCCACTAAACTTGCCATACGCTCAACCATTGTTTCTAAACAATGGGCAAGTGTGTGGTCTTTGGGAGTCCCCCTCTTAGATTTCGATGACGAGGGGGACTCTACTGATCATGATGGTGACAATCTCGTCCGCAGGAAGCTGTTGTTCATTGATTTTGTGGAAAGCTGTATGAAACATTGTGGGAAAAAGAAGCTCTTGGAGTTGGATAGTTTCAGGCTTCGAATGAGATATGATTCTGAGTTAATAGGCGCGACAAGAATAGACAAGTGGTTTAGTTTTGTGGTTGATAGATGCGTCAAAGAGTTAGATATCAGCATTCAAAGAAAAGATGACAATGATCCGGTCAAAAGCACATACTACTGCATACCTCATACCATTCTCAATGCTCAATTTCTTACTGGTCTGAATCTGGAGCATGTGAGAATACAGGAGAGTATTGATCTGATAAGCCTTCCGTTGTTGAAAACCATGTCCCTAAACACTGTGCTGTTTGATTGCCGCATGCATTCGGATAGATCACTCTGGATGGGTTGTCCTTCCATCGAGCATTTGTCATTAACTTCGTGTTCTTTTAGCTCATTACAGTGTTCGACGATCACTGTCATAAATTCCAGTCTTAAATTCTTGCAGGTTATGTATTGCAAGTGTGTGTCTTTTCAACTTAGAGATGAGAATCTTGAATCTGTTATATTCACTTCAGAATTTTCTCAACTTCATTCCATCTGCTTGCTTAATGAATGCGTCAAGTTGAAATATATCAGCATTTATGCTCAGCATGCGAAGATTTGTGAAATTCCCGGAACATGTCGAGATAATGTGAAGGCCAATATTGATATTCCAAATCTCCGAGTTTTTGGCTACGATGGTTATTTGCTGCCTAATGATGTAATCTCTATGAAAGCTCGAAATCCATTGGCTGCACTTATCAAGCTTAATTGGGATGCTGAAGAAGAAGTTCTAGAACTTACTTTCCTCCCTCCATGGACACATTTTCCTACTTGGAGAGATTTTCTTCAAAACTTTGATTGCTTCGATAAATTAGAGCTAGATATTCGTCATGATGCCATTGCAGAGGTTAATTATTTGTCGTTATTAATTGAACTGTTGCGAACATTGTTGCTGCAGGTACTCACGTTTTCAGAAAATTTCAGGAAGACCTTCTCACCACCATTGCCTAATATCAAGTATGTTAGAATCTCGATTGTACGTCTTCGTTGTCCGCAGACAGTGGCCAGAGTTTCTGCCTTGATAAACTCTTTGCATTGGATGGCACCATCTGCAACAATCACATTAAATTACTGGGACTATGGGCCGCCTGAATCTTCAGGGGAATCTTCAGGCGAAGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

472

Amino Acids

54.28

Weight (kDa)

5.89

Isoelectric Point (pI)

41.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 191
Acc36I ACCTGC 2 cut(s) 685, 1180
AccB1I GGYRCC 1 cut(s) 1336
AccII CGCG 1 cut(s) 317
AciI CCGC 4 cut(s) 196, 565, 1286, 1379
AclWI GGATC 1 cut(s) 398
AcoI YGGCCR 1 cut(s) 1296
AcsI RAATTY 5 cut(s) 673, 686, 767, 858, 1210
AcuI CTGAAG 4 cut(s) 747, 1032, 1374, 1386
AfaI GTAC 2 cut(s) 1194, 1272
AflIII ACRYGT 1 cut(s) 869
AgsI TTSAA 7 cut(s) 386, 529, 725, 746, 817, 1082, 1166
AloI GAACNNNNNNTCC 2 cut(s) 1020, 1052
AluBI AGCT 7 cut(s) 205, 231, 259, 642, 968, 997, 1111
AluI AGCT 7 cut(s) 205, 231, 259, 642, 968, 997, 1111
AlwI GGATC 1 cut(s) 398
AoxI GGCC 3 cut(s) 888, 1296, 1376
ApeKI GCWGC 3 cut(s) 940, 983, 1186
ApoI RAATTY 5 cut(s) 673, 686, 767, 858, 1210
AseI ATTAAT 1 cut(s) 1160
Asp700I GAANNNNTTC 2 cut(s) 1020, 1223
AspLEI GCGC 1 cut(s) 317
AspS9I GGNCC 1 cut(s) 1376
AsuC2I CCSGG 1 cut(s) 864
AsuHPI GGTGA 2 cut(s) 194, 1221
AsuII TTCGAA 1 cut(s) 286
BaeI ACNNNNGTAYC 2 cut(s) 1184, 1217
BalI TGGCCA 1 cut(s) 1298
BanI GGYRCC 1 cut(s) 1336
BbsI GAAGAC 2 cut(s) 1226, 1268
BbvI GCAGC 3 cut(s) 927, 970, 1173
BccI CCATC 7 cut(s) 173, 586, 614, 794, 923, 1327, 1348
BclI TGATCA 1 cut(s) 172
BcnI CCSGG 1 cut(s) 864
BfaI CTAG 2 cut(s) 1025, 1112
BfmI CTRYAG 1 cut(s) 1187
BfuAI ACCTGC 2 cut(s) 685, 1180
BisI GCNGC 5 cut(s) 565, 941, 984, 1187, 1379
BlpI GCTNAGC 1 cut(s) 837
BlsI GCNGC 5 cut(s) 566, 942, 985, 1188, 1380
Bme1390I CCNGG 1 cut(s) 864
BmgT120I GGNCC 1 cut(s) 1376
BmiI GGNNCC 1 cut(s) 1338
BmrFI CCNGG 1 cut(s) 864
BmrI ACTGGG 1 cut(s) 1375
BmsI GCATC 3 cut(s) 347, 997, 1117
BmuI ACTGGG 1 cut(s) 1375
BpiI GAAGAC 2 cut(s) 1226, 1268
BplI GAGNNNNNCTC 4 cut(s) 123, 155, 149, 181
BpmI CTGGAG 1 cut(s) 497
Bpu1102I GCTNAGC 1 cut(s) 837
Bpu14I TTCGAA 1 cut(s) 286
BpuMI CCSGG 1 cut(s) 864
BsaBI GATNNNNATC 1 cut(s) 738
BsaJI CCNNGG 1 cut(s) 1046
BsaWI WCCGGW 1 cut(s) 406
Bse1I ACTGG 3 cut(s) 469, 678, 1370
Bse3DI GCAATG 2 cut(s) 1131, 1235
Bse8I GATNNNNATC 1 cut(s) 738
BseDI CCNNGG 1 cut(s) 1046
BseGI GGATG 3 cut(s) 597, 1012, 1338
BseJI GATNNNNATC 1 cut(s) 738
BseMI GCAATG 2 cut(s) 1131, 1235
BseMII CTCAG 2 cut(s) 294, 851
BseNI ACTGG 3 cut(s) 469, 678, 1370
BseXI GCAGC 3 cut(s) 927, 970, 1173
BsgI GTGCAG 1 cut(s) 969
Bsh1236I CGCG 1 cut(s) 317
BshFI GGCC 3 cut(s) 890, 1298, 1378
BshNI GGYRCC 1 cut(s) 1336
BsiSI CCGG 2 cut(s) 407, 864
BslFI GGGAC 4 cut(s) 119, 176, 523, 1382
BsmFI GGGAC 4 cut(s) 119, 176, 523, 1382
BsmI GAATGC 3 cut(s) 381, 571, 809
BsnI GGCC 3 cut(s) 890, 1298, 1378
Bsp119I TTCGAA 1 cut(s) 286
Bsp143I GATC 5 cut(s) 172, 403, 505, 581, 660
Bsp1720I GCTNAGC 1 cut(s) 837
Bsp19I CCATGG 1 cut(s) 1046
BspACI CCGC 4 cut(s) 196, 565, 1286, 1379
BspANI GGCC 3 cut(s) 890, 1298, 1378
BspCNI CTCAG 2 cut(s) 295, 850
BspFNI CGCG 1 cut(s) 317
BspHI TCATGA 2 cut(s) 175, 1123
BspLI GGNNCC 1 cut(s) 1338
BspMAI CTGCAG 1 cut(s) 1191
BspMI ACCTGC 2 cut(s) 685, 1180
BspPI GGATC 1 cut(s) 398
BspT104I TTCGAA 1 cut(s) 286
BspT107I GGYRCC 1 cut(s) 1336
BsrDI GCAATG 2 cut(s) 1131, 1235
BsrI ACTGG 3 cut(s) 469, 678, 1370
BssECI CCNNGG 1 cut(s) 1046
BssMI GATC 5 cut(s) 172, 403, 505, 581, 660
BssT1I CCWWGG 1 cut(s) 1046
Bst4CI ACNGT 5 cut(s) 550, 651, 667, 1170, 1294
BstAPI GCANNNNNTGC 1 cut(s) 1343
BstBI TTCGAA 1 cut(s) 286
BstC8I GCNNGC 3 cut(s) 569, 794, 843
BstDEI CTNAG 4 cut(s) 142, 303, 728, 837
BstDSI CCRYGG 1 cut(s) 1046
BstF5I GGATG 3 cut(s) 597, 1012, 1338
BstFNI CGCG 1 cut(s) 317
BstHHI GCGC 1 cut(s) 317
BstKTI GATC 5 cut(s) 175, 406, 508, 584, 663
BstMBI GATC 5 cut(s) 172, 403, 505, 581, 660
BstMWI GCNNNNNNNGC 2 cut(s) 842, 1343
BstNSI RCATGY 4 cut(s) 485, 571, 845, 873
BstSCI CCNGG 1 cut(s) 862
BstSFI CTRYAG 1 cut(s) 1187
BstUI CGCG 1 cut(s) 317
BstV1I GCAGC 3 cut(s) 927, 970, 1173
BstV2I GAAGAC 2 cut(s) 1226, 1268
BsuRI GGCC 3 cut(s) 890, 1298, 1378
BtgI CCRYGG 1 cut(s) 1046
BtsCI GGATG 3 cut(s) 597, 1012, 1338
BtsIMutI CAGTG 4 cut(s) 546, 656, 663, 1299
BveI ACCTGC 2 cut(s) 685, 1180
Cac8I GCNNGC 3 cut(s) 569, 794, 843
CciI TCATGA 2 cut(s) 175, 1123
CfoI GCGC 1 cut(s) 317
Cfr13I GGNCC 1 cut(s) 1376
CseI GACGC 2 cut(s) 349, 796
Csp6I GTAC 2 cut(s) 1193, 1271
CspCI CAANNNNNGTGG 2 cut(s) 58, 93
CviAII CATG 8 cut(s) 176, 482, 535, 568, 842, 870, 1047, 1124
CviQI GTAC 2 cut(s) 1193, 1271
DdeI CTNAG 4 cut(s) 142, 303, 728, 837
DpnI GATC 5 cut(s) 174, 405, 507, 583, 662
DpnII GATC 5 cut(s) 172, 403, 505, 581, 660
DrdI GACNNNNNNGTC 1 cut(s) 191
DseDI GACNNNNNNGTC 1 cut(s) 191
EaeI YGGCCR 1 cut(s) 1296
Eco130I CCWWGG 1 cut(s) 1046
Eco32I GATATC 1 cut(s) 376
Eco57I CTGAAG 4 cut(s) 747, 1032, 1374, 1386
EcoRV GATATC 1 cut(s) 376
EcoT14I CCWWGG 1 cut(s) 1046
EcoT22I ATGCAT 1 cut(s) 573
ErhI CCWWGG 1 cut(s) 1046
FaeI CATG 8 cut(s) 179, 485, 538, 571, 845, 873, 1050, 1127
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FaqI GGGAC 4 cut(s) 119, 176, 523, 1382
FatI CATG 8 cut(s) 175, 481, 534, 567, 841, 869, 1046, 1123
FbaI TGATCA 1 cut(s) 172
Fnu4HI GCNGC 5 cut(s) 565, 941, 984, 1187, 1379
FokI GGATG 3 cut(s) 604, 1019, 1345
Fsp4HI GCNGC 5 cut(s) 565, 941, 984, 1187, 1379
FspBI CTAG 2 cut(s) 1025, 1112
GlaI GCGC 1 cut(s) 316
GluI GCNGC 5 cut(s) 565, 941, 984, 1187, 1379
GsuI CTGGAG 1 cut(s) 497
HaeIII GGCC 3 cut(s) 890, 1298, 1378
HapII CCGG 2 cut(s) 407, 864
HgaI GACGC 2 cut(s) 349, 796
HhaI GCGC 1 cut(s) 317
Hin1II CATG 8 cut(s) 179, 485, 538, 571, 845, 873, 1050, 1127
Hin6I GCGC 1 cut(s) 315
HinP1I GCGC 1 cut(s) 315
HindIII AAGCTT 1 cut(s) 995
HpaII CCGG 2 cut(s) 407, 864
HphI GGTGA 2 cut(s) 194, 1221
Hpy166II GTNNAC 2 cut(s) 10, 46
Hpy188I TCNGA 8 cut(s) 59, 304, 471, 510, 577, 766, 914, 1207
Hpy8I GTNNAC 2 cut(s) 10, 46
Hpy99I CGWCG 1 cut(s) 661
HpyAV CCTTC 5 cut(s) 38, 527, 612, 880, 1234
HpyCH4III ACNGT 5 cut(s) 550, 651, 667, 1170, 1294
HpyCH4IV ACGT 2 cut(s) 1199, 1273
HpyCH4V TGCA 9 cut(s) 429, 571, 694, 708, 986, 1136, 1189, 1327, 1346
HpyF10VI GCNNNNNNNGC 2 cut(s) 842, 1343
HpyF3I CTNAG 4 cut(s) 142, 303, 728, 837
HpySE526I ACGT 2 cut(s) 1199, 1273
Hsp92II CATG 8 cut(s) 179, 485, 538, 571, 845, 873, 1050, 1127
HspAI GCGC 1 cut(s) 315
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 5 cut(s) 172, 403, 505, 581, 660
LmnI GCTCC 1 cut(s) 478
Lsp1109I GCAGC 3 cut(s) 927, 970, 1173
LweI GCATC 3 cut(s) 347, 997, 1117
MaeI CTAG 2 cut(s) 1025, 1112
MaeII ACGT 2 cut(s) 1199, 1273
MaeIII GTNAC 1 cut(s) 182
MalI GATC 5 cut(s) 174, 405, 507, 583, 662
MboI GATC 5 cut(s) 172, 403, 505, 581, 660
MboII GAAGA 8 cut(s) 859, 1025, 1028, 1070, 1231, 1268, 1380, 1392
MlsI TGGCCA 1 cut(s) 1298
MluNI TGGCCA 1 cut(s) 1298
MlyI GAGTC 3 cut(s) 54, 141, 158
MmeI TCCRAC 2 cut(s) 82, 249
MnlI CCTC 7 cut(s) 33, 149, 151, 444, 1049, 1053, 1132
Mox20I TGGCCA 1 cut(s) 1298
Mph1103I ATGCAT 1 cut(s) 573
MroXI GAANNNNTTC 2 cut(s) 1020, 1223
MscI TGGCCA 1 cut(s) 1298
MseI TTAA 8 cut(s) 308, 623, 684, 798, 999, 1143, 1160, 1358
MslI CAYNNNNRTG 2 cut(s) 180, 649
Msp20I TGGCCA 1 cut(s) 1298
MspI CCGG 2 cut(s) 407, 864
MspR9I CCNGG 1 cut(s) 864
Mva1269I GAATGC 3 cut(s) 381, 571, 809
MvnI CGCG 1 cut(s) 317
MwoI GCNNNNNNNGC 2 cut(s) 842, 1343
NciI CCSGG 1 cut(s) 864
NcoI CCATGG 1 cut(s) 1046
NdeII GATC 5 cut(s) 172, 403, 505, 581, 660
NlaIII CATG 8 cut(s) 179, 485, 538, 571, 845, 873, 1050, 1127
NlaIV GGNNCC 1 cut(s) 1338
NmuCI GTSAC 1 cut(s) 182
NsiI ATGCAT 1 cut(s) 573
NspI RCATGY 4 cut(s) 485, 571, 845, 873
NspV TTCGAA 1 cut(s) 286
PaeI GCATGC 2 cut(s) 571, 845
PagI TCATGA 2 cut(s) 175, 1123
PciI ACATGT 1 cut(s) 869
PctI GAATGC 3 cut(s) 381, 571, 809
PdmI GAANNNNTTC 2 cut(s) 1020, 1223
PfeI GAWTC 7 cut(s) 299, 472, 739, 746, 1260, 1385, 1397
PfoI TCCNGGA 1 cut(s) 862
PkrI GCNGC 5 cut(s) 566, 942, 985, 1188, 1380
PleI GAGTC 3 cut(s) 54, 140, 158
PpsI GAGTC 3 cut(s) 54, 140, 158
PscI ACATGT 1 cut(s) 869
PshBI ATTAAT 1 cut(s) 1160
PspN4I GGNNCC 1 cut(s) 1338
PspPI GGNCC 1 cut(s) 1376
PstI CTGCAG 1 cut(s) 1191
RsaI GTAC 2 cut(s) 1194, 1272
RsaNI GTAC 2 cut(s) 1193, 1271
RseI CAYNNNNRTG 2 cut(s) 180, 649
SaqAI TTAA 8 cut(s) 308, 623, 684, 798, 999, 1143, 1160, 1358
SatI GCNGC 5 cut(s) 565, 941, 984, 1187, 1379
Sau3AI GATC 5 cut(s) 172, 403, 505, 581, 660
Sau96I GGNCC 1 cut(s) 1376
SchI GAGTC 3 cut(s) 54, 141, 158
ScrFI CCNGG 1 cut(s) 864
SfaNI GCATC 3 cut(s) 347, 997, 1117
SfcI CTRYAG 1 cut(s) 1187
SfuI TTCGAA 1 cut(s) 286
SmiMI CAYNNNNRTG 2 cut(s) 180, 649
SphI GCATGC 2 cut(s) 571, 845
SsiI CCGC 4 cut(s) 196, 565, 1286, 1379
SspI AATATT 1 cut(s) 895
SspMI CTAG 2 cut(s) 1025, 1112
StyD4I CCNGG 1 cut(s) 862
StyI CCWWGG 1 cut(s) 1046
TaaI ACNGT 5 cut(s) 550, 651, 667, 1170, 1294
TaiI ACGT 2 cut(s) 1202, 1276
TaqI TCGA 8 cut(s) 150, 286, 609, 656, 874, 970, 1098, 1265
TauI GCSGC 2 cut(s) 567, 1381
TfiI GAWTC 7 cut(s) 299, 472, 739, 746, 1260, 1385, 1397
Tru1I TTAA 8 cut(s) 308, 623, 684, 798, 999, 1143, 1160, 1358
Tru9I TTAA 8 cut(s) 308, 623, 684, 798, 999, 1143, 1160, 1358
TscAI CASTG 4 cut(s) 553, 656, 670, 1299
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 3 cut(s) 940, 983, 1186
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 5 cut(s) 202, 251, 770, 816, 977
TspGWI ACGGA 1 cut(s) 510
TspRI CASTG 4 cut(s) 553, 656, 670, 1299
VspI ATTAAT 1 cut(s) 1160
XapI RAATTY 5 cut(s) 673, 686, 767, 858, 1210
XbaI TCTAGA 1 cut(s) 1024
XceI RCATGY 4 cut(s) 485, 571, 845, 873
XmnI GAANNNNTTC 2 cut(s) 1020, 1223
XspI CTAG 2 cut(s) 1025, 1112
Zsp2I ATGCAT 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.