Rmu_sc0017847.1_g000006

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017847.1
OG0000428
Physical Location & Seq
Reverse (-)
18314 .. 19144
831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017847.1_g000006.1.cds

Sequence Viewer

Length: 831 bp
atgagttgtctttccaagcaatgggaaggtgtatggtctgcgctccgcatattagattttgacgagtgcaatcaggcacatgatgataatgatgatgacaactacaaacatgtaaagttcctcaacatcttggcaaggtatttggaattccgtcagaaggacaaccagcaacctcccttggataaattcaggctttcaaggagatacgtagatgcagatgaagatgctatcataggaaagttattgagtaattcatttgagagcaatgtcaaggacttagatatcagccttagaagtaaacatcaggaggttgaaagctactattgcttaccccggacggccattattaatgcaaaatctgtgactactctaaatttggagcacctgaggataaaggacattgacagtgttggacctgagcctatgtttccctctttgaaaactttgtcccttaaaaccgtgcaagtgagtggccaggctcccttctacttaattttggggtgcacttcagttgagcatttatcattaacttcatgctcttttgaccccccgctgcttcatgttttgagttctagtctcaaaacattggaagttgagaattgctatgcccagcatattcaagttgatgaagctatgaatcttgaatctttcacatgtgtttcaaaactttctctgtttctgggtatggtgttgaacaaatctttcaagctgagttatgtcaaaatccgtgctcaacacttgaaatacttcggtgtatttggatgccgtgatactttgaaggccagaatcagtactccaagtctgggtcattttgattttcagggtttataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box LRR_2

Protein Analysis

276

Amino Acids

31.46

Weight (kDa)

6.31

Isoelectric Point (pI)

38.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 829
AccB7I CCANNNNNTGG 1 cut(s) 21
AciI CCGC 2 cut(s) 46, 551
AcoI YGGCCR 2 cut(s) 339, 472
AcsI RAATTY 3 cut(s) 146, 185, 373
AcuI CTGAAG 1 cut(s) 492
AfaI GTAC 1 cut(s) 793
AfiI CCNNNNNNNGG 3 cut(s) 21, 157, 803
AflIII ACRYGT 2 cut(s) 109, 653
AjnI CCWGG 1 cut(s) 474
AluBI AGCT 3 cut(s) 318, 632, 709
AluI AGCT 3 cut(s) 318, 632, 709
Alw21I GWGCWC 3 cut(s) 384, 506, 733
Alw26I GTCTC 1 cut(s) 581
Alw44I GTGCAC 1 cut(s) 502
AoxI GGCC 3 cut(s) 339, 472, 780
ApaLI GTGCAC 1 cut(s) 502
ApeKI GCWGC 1 cut(s) 553
ApoI RAATTY 3 cut(s) 146, 185, 373
AseI ATTAAT 1 cut(s) 348
Asp700I GAANNNNTTC 1 cut(s) 746
AspLEI GCGC 1 cut(s) 43
AspS9I GGNCC 1 cut(s) 413
AsuC2I CCSGG 1 cut(s) 334
AvaII GGWCC 1 cut(s) 413
AxyI CCTNAGG 1 cut(s) 386
BaeGI GKGCMC 1 cut(s) 506
BalI TGGCCA 1 cut(s) 474
Bbv12I GWGCWC 3 cut(s) 384, 506, 733
BbvI GCAGC 1 cut(s) 540
BceAI ACGGC 2 cut(s) 354, 750
BciT130I CCWGG 1 cut(s) 476
BcnI CCSGG 1 cut(s) 334
BcoDI GTCTC 1 cut(s) 581
BfaI CTAG 1 cut(s) 573
BisI GCNGC 1 cut(s) 554
BlsI GCNGC 1 cut(s) 555
BmcAI AGTACT 1 cut(s) 793
Bme1390I CCNGG 2 cut(s) 334, 476
Bme18I GGWCC 1 cut(s) 413
BmgT120I GGNCC 1 cut(s) 413
BmiI GGNNCC 1 cut(s) 480
BmrFI CCNGG 2 cut(s) 334, 476
BmsI GCATC 3 cut(s) 202, 214, 752
Bpu10I CCTNAGC 1 cut(s) 417
BpuMI CCSGG 1 cut(s) 334
BsaAI YACGTR 1 cut(s) 208
BsaJI CCNNGG 2 cut(s) 177, 332
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 157, 803
Bse21I CCTNAGG 1 cut(s) 386
Bse3DI GCAATG 2 cut(s) 26, 271
BseBI CCWGG 1 cut(s) 476
BseDI CCNNGG 2 cut(s) 177, 332
BseGI GGATG 1 cut(s) 767
BseLI CCNNNNNNNGG 3 cut(s) 21, 157, 803
BseMI GCAATG 2 cut(s) 26, 271
BseMII CTCAG 3 cut(s) 377, 408, 701
BseSI GKGCMC 1 cut(s) 506
BseXI GCAGC 1 cut(s) 540
BseYI CCCAGC 1 cut(s) 609
BshFI GGCC 3 cut(s) 341, 474, 782
BsiHKAI GWGCWC 3 cut(s) 384, 506, 733
BsiSI CCGG 1 cut(s) 334
BslFI GGGAC 1 cut(s) 433
BslI CCNNNNNNNGG 3 cut(s) 21, 157, 803
BsmAI GTCTC 1 cut(s) 581
BsmFI GGGAC 1 cut(s) 433
BsnI GGCC 3 cut(s) 341, 474, 782
Bsp1286I GDGCHC 3 cut(s) 384, 506, 733
BspACI CCGC 2 cut(s) 46, 551
BspANI GGCC 3 cut(s) 341, 474, 782
BspCNI CTCAG 3 cut(s) 378, 409, 702
BspLI GGNNCC 1 cut(s) 480
BsrDI GCAATG 2 cut(s) 26, 271
BssECI CCNNGG 2 cut(s) 177, 332
BssT1I CCWWGG 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 476
Bst4CI ACNGT 2 cut(s) 407, 460
BstBAI YACGTR 1 cut(s) 208
BstDEI CTNAG 5 cut(s) 277, 290, 386, 417, 710
BstF5I GGATG 1 cut(s) 767
BstHHI GCGC 1 cut(s) 43
BstMAI GTCTC 1 cut(s) 581
BstMWI GCNNNNNNNGC 1 cut(s) 324
BstNI CCWGG 1 cut(s) 476
BstNSI RCATGY 2 cut(s) 113, 657
BstSCI CCNGG 2 cut(s) 332, 474
BstSLI GKGCMC 1 cut(s) 506
BstSNI TACGTA 1 cut(s) 208
BstV1I GCAGC 1 cut(s) 540
Bsu36I CCTNAGG 1 cut(s) 386
BsuRI GGCC 3 cut(s) 341, 474, 782
BtsCI GGATG 1 cut(s) 767
BtsIMutI CAGTG 1 cut(s) 412
CfoI GCGC 1 cut(s) 43
Cfr13I GGNCC 1 cut(s) 413
Csp6I GTAC 1 cut(s) 792
CviAII CATG 5 cut(s) 80, 110, 534, 560, 654
CviQI GTAC 1 cut(s) 792
DdeI CTNAG 5 cut(s) 277, 290, 386, 417, 710
EaeI YGGCCR 2 cut(s) 339, 472
Eco105I TACGTA 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 177
Eco32I GATATC 1 cut(s) 283
Eco47I GGWCC 1 cut(s) 413
Eco57I CTGAAG 1 cut(s) 492
Eco81I CCTNAGG 1 cut(s) 386
EcoRI GAATTC 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 474
EcoRV GATATC 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 5 cut(s) 83, 113, 537, 563, 657
FaqI GGGAC 1 cut(s) 433
FatI CATG 5 cut(s) 79, 109, 533, 559, 653
FauI CCCGC 1 cut(s) 558
Fnu4HI GCNGC 1 cut(s) 554
FokI GGATG 1 cut(s) 774
Fsp4HI GCNGC 1 cut(s) 554
FspBI CTAG 1 cut(s) 573
GlaI GCGC 1 cut(s) 42
GluI GCNGC 1 cut(s) 554
GsaI CCCAGC 1 cut(s) 613
HaeIII GGCC 3 cut(s) 341, 474, 782
HapII CCGG 1 cut(s) 334
HhaI GCGC 1 cut(s) 43
Hin1II CATG 5 cut(s) 83, 113, 537, 563, 657
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HinfI GANTC 3 cut(s) 637, 644, 786
HpaII CCGG 1 cut(s) 334
Hpy166II GTNNAC 2 cut(s) 299, 504
Hpy188I TCNGA 1 cut(s) 156
Hpy188III TCNNGA 2 cut(s) 305, 641
Hpy8I GTNNAC 2 cut(s) 299, 504
HpyAV CCTTC 4 cut(s) 20, 151, 493, 772
HpyCH4III ACNGT 2 cut(s) 407, 460
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 5 cut(s) 69, 215, 353, 463, 504
HpyF10VI GCNNNNNNNGC 1 cut(s) 324
HpyF3I CTNAG 5 cut(s) 277, 290, 386, 417, 710
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 5 cut(s) 83, 113, 537, 563, 657
HspAI GCGC 1 cut(s) 41
LmnI GCTCC 3 cut(s) 48, 379, 484
Lsp1109I GCAGC 1 cut(s) 540
LweI GCATC 3 cut(s) 202, 214, 752
MaeI CTAG 1 cut(s) 573
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 1 cut(s) 361
MboII GAAGA 1 cut(s) 233
MhlI GDGCHC 3 cut(s) 384, 506, 733
MlsI TGGCCA 1 cut(s) 474
MluCI AATT 6 cut(s) 146, 185, 250, 373, 492, 598
MluNI TGGCCA 1 cut(s) 474
MmeI TCCRAC 1 cut(s) 391
MnlI CCTC 5 cut(s) 131, 183, 301, 381, 442
Mox20I TGGCCA 1 cut(s) 474
MroXI GAANNNNTTC 1 cut(s) 746
MscI TGGCCA 1 cut(s) 474
MseI TTAA 4 cut(s) 348, 453, 491, 527
Msp20I TGGCCA 1 cut(s) 474
MspA1I CMGCKG 1 cut(s) 553
MspI CCGG 1 cut(s) 334
MspR9I CCNGG 2 cut(s) 334, 476
MvaI CCWGG 1 cut(s) 476
MwoI GCNNNNNNNGC 1 cut(s) 324
NciI CCSGG 1 cut(s) 334
NlaIII CATG 5 cut(s) 83, 113, 537, 563, 657
NlaIV GGNNCC 1 cut(s) 480
NmuCI GTSAC 1 cut(s) 361
NspI RCATGY 2 cut(s) 113, 657
PciI ACATGT 2 cut(s) 109, 653
PdmI GAANNNNTTC 1 cut(s) 746
PfeI GAWTC 3 cut(s) 637, 644, 786
PflMI CCANNNNNTGG 1 cut(s) 21
PkrI GCNGC 1 cut(s) 555
Ppu21I YACGTR 1 cut(s) 208
PscI ACATGT 2 cut(s) 109, 653
PshBI ATTAAT 1 cut(s) 348
PsiI TTATAA 1 cut(s) 829
Psp6I CCWGG 1 cut(s) 474
PspFI CCCAGC 1 cut(s) 609
PspGI CCWGG 1 cut(s) 474
PspN4I GGNNCC 1 cut(s) 480
PspPI GGNCC 1 cut(s) 413
RsaI GTAC 1 cut(s) 793
RsaNI GTAC 1 cut(s) 792
SaqAI TTAA 4 cut(s) 348, 453, 491, 527
SatI GCNGC 1 cut(s) 554
Sau96I GGNCC 1 cut(s) 413
ScaI AGTACT 1 cut(s) 793
ScrFI CCNGG 2 cut(s) 334, 476
SduI GDGCHC 3 cut(s) 384, 506, 733
SfaNI GCATC 3 cut(s) 202, 214, 752
SinI GGWCC 1 cut(s) 413
SnaBI TACGTA 1 cut(s) 208
Sse9I AATT 6 cut(s) 146, 185, 250, 373, 492, 598
SsiI CCGC 2 cut(s) 46, 551
SspMI CTAG 1 cut(s) 573
StyD4I CCNGG 2 cut(s) 332, 474
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 2 cut(s) 407, 460
TaiI ACGT 1 cut(s) 210
TasI AATT 6 cut(s) 146, 185, 250, 373, 492, 598
TatI WGTACW 1 cut(s) 791
TfiI GAWTC 3 cut(s) 637, 644, 786
Tru1I TTAA 4 cut(s) 348, 453, 491, 527
Tru9I TTAA 4 cut(s) 348, 453, 491, 527
TscAI CASTG 1 cut(s) 412
TseFI GTSAC 1 cut(s) 361
TseI GCWGC 1 cut(s) 553
Tsp45I GTSAC 1 cut(s) 361
TspDTI ATGAA 6 cut(s) 234, 243, 522, 548, 642, 650
TspGWI ACGGA 2 cut(s) 140, 716
TspRI CASTG 1 cut(s) 412
Van91I CCANNNNNTGG 1 cut(s) 21
VneI GTGCAC 1 cut(s) 502
VpaK11BI GGWCC 1 cut(s) 413
VspI ATTAAT 1 cut(s) 348
XapI RAATTY 3 cut(s) 146, 185, 373
XceI RCATGY 2 cut(s) 113, 657
XmnI GAANNNNTTC 1 cut(s) 746
XspI CTAG 1 cut(s) 573
ZrmI AGTACT 1 cut(s) 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.