Rh1CG307500

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000428
Physical Location & Seq
Forward (+)
58134472 .. 58134930
459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG307500.1

Sequence Viewer

Length: 459 bp
ATGAAGAACATTGACAGTTGTGTCGAGCCTATTGACTACTCTATCTCTCTGCGCCTTCTTCCTTCTTTGAAAACCATGTCTCTTAAAACTGTTCAATTTGATCACAATGCTCTCTTCTTCTTAGTTTGGGAGTGCCCTTTCATCGAGCATCTTTCGTTAGCCTCATGTTCTTTTGAACTCTCCGAGATTCGTCTTTTAAGTCCCACACTCAAATCCTTGGAAATTAAGCACTGCAAGGCTTCTCAAGCTGAACTTTATGTTGAAGATCTTGAATCTCTTTCCATCGTTTCATCAGACTTTCCGTTGGAAAGCGTGATCTTGGAAAGATGCTTGAAATTGAAACATGTGAATATATGTGCTCAGTTCTTGGAATGGTTTTATTTACACGGACAATGCCATGATGTTAATGCCATAATCGATGCTCCAGCCCTATTTTTTTCAGTTTCAGAGGTCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

152

Amino Acids

17.34

Weight (kDa)

5.0

Isoelectric Point (pI)

55.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 20 - 93 6.2e-09 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 20
AflIII ACRYGT 1 cut(s) 343
AgsI TTSAA 7 cut(s) 70, 95, 176, 263, 272, 334, 340
AluBI AGCT 1 cut(s) 248
AluI AGCT 1 cut(s) 248
Alw21I GWGCWC 1 cut(s) 361
Alw26I GTCTC 1 cut(s) 84
AspLEI GCGC 1 cut(s) 54
BaeGI GKGCMC 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 361
BccI CCATC 1 cut(s) 290
BclI TGATCA 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 84
BglII AGATCT 1 cut(s) 265
BmsI GCATC 3 cut(s) 157, 317, 409
BpmI CTGGAG 1 cut(s) 408
BpuEI CTTGAG 1 cut(s) 228
Bsa29I ATCGAT 1 cut(s) 417
BsaJI CCNNGG 1 cut(s) 216
BseCI ATCGAT 1 cut(s) 417
BseDI CCNNGG 1 cut(s) 216
BseMII CTCAG 1 cut(s) 374
BseSI GKGCMC 1 cut(s) 137
BshVI ATCGAT 1 cut(s) 417
BsiHKAI GWGCWC 1 cut(s) 361
BslFI GGGAC 1 cut(s) 186
BsmAI GTCTC 1 cut(s) 84
BsmFI GGGAC 1 cut(s) 186
Bsp1286I GDGCHC 2 cut(s) 137, 361
Bsp143I GATC 3 cut(s) 100, 265, 315
BspCNI CTCAG 1 cut(s) 373
BspDI ATCGAT 1 cut(s) 417
BssECI CCNNGG 1 cut(s) 216
BssMI GATC 3 cut(s) 100, 265, 315
BssT1I CCWWGG 1 cut(s) 216
Bst4CI ACNGT 2 cut(s) 17, 91
Bst6I CTCTTC 1 cut(s) 119
BstDEI CTNAG 2 cut(s) 121, 360
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 3 cut(s) 103, 268, 318
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 3 cut(s) 100, 265, 315
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNSI RCATGY 1 cut(s) 347
BstSLI GKGCMC 1 cut(s) 137
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
Bsu15I ATCGAT 1 cut(s) 417
BsuTUI ATCGAT 1 cut(s) 417
BtsI GCAGTG 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 229
CfoI GCGC 1 cut(s) 54
ClaI ATCGAT 1 cut(s) 417
CviAII CATG 4 cut(s) 76, 165, 344, 398
CviJI RGCY 5 cut(s) 28, 161, 239, 248, 428
CviKI_1 RGCY 5 cut(s) 28, 161, 239, 248, 428
DdeI CTNAG 2 cut(s) 121, 360
DpnI GATC 3 cut(s) 102, 267, 317
DpnII GATC 3 cut(s) 100, 265, 315
DrdI GACNNNNNNGTC 1 cut(s) 20
DseDI GACNNNNNNGTC 1 cut(s) 20
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 216
EcoT14I CCWWGG 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 4 cut(s) 79, 168, 347, 401
FaiI YATR 8 cut(s) 77, 166, 258, 345, 353, 355, 399, 413
FalI AAGNNNNNCTT 2 cut(s) 237, 269
FaqI GGGAC 1 cut(s) 186
FatI CATG 4 cut(s) 75, 164, 343, 397
FbaI TGATCA 1 cut(s) 100
GlaI GCGC 1 cut(s) 53
GsuI CTGGAG 1 cut(s) 408
HhaI GCGC 1 cut(s) 54
Hin1II CATG 4 cut(s) 79, 168, 347, 401
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HinfI GANTC 2 cut(s) 187, 272
Hpy188I TCNGA 3 cut(s) 184, 295, 448
Hpy188III TCNNGA 1 cut(s) 269
HpyAV CCTTC 2 cut(s) 65, 72
HpyCH4III ACNGT 2 cut(s) 17, 91
HpyCH4V TGCA 1 cut(s) 234
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 2 cut(s) 121, 360
Hsp92II CATG 4 cut(s) 79, 168, 347, 401
HspAI GCGC 1 cut(s) 52
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 3 cut(s) 100, 265, 315
LmnI GCTCC 1 cut(s) 427
LpnPI CCDG 1 cut(s) 438
LweI GCATC 3 cut(s) 157, 317, 409
MalI GATC 3 cut(s) 102, 267, 317
MboI GATC 3 cut(s) 100, 265, 315
MboII GAAGA 5 cut(s) 16, 50, 106, 109, 275
MflI RGATCY 1 cut(s) 265
MhlI GDGCHC 2 cut(s) 137, 361
MluCI AATT 3 cut(s) 95, 222, 335
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 2 cut(s) 172, 442
MseI TTAA 4 cut(s) 84, 197, 225, 405
MwoI GCNNNNNNNGC 1 cut(s) 245
NdeII GATC 3 cut(s) 100, 265, 315
NlaIII CATG 4 cut(s) 79, 168, 347, 401
NspI RCATGY 1 cut(s) 347
PciI ACATGT 1 cut(s) 343
PfeI GAWTC 2 cut(s) 187, 272
PscI ACATGT 1 cut(s) 343
PsuI RGATCY 1 cut(s) 265
SaqAI TTAA 4 cut(s) 84, 197, 225, 405
Sau3AI GATC 3 cut(s) 100, 265, 315
SduI GDGCHC 2 cut(s) 137, 361
SetI ASST 2 cut(s) 250, 453
SfaNI GCATC 3 cut(s) 157, 317, 409
SmlI CTYRAG 1 cut(s) 243
SmoI CTYRAG 1 cut(s) 243
Sse9I AATT 3 cut(s) 95, 222, 335
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 2 cut(s) 17, 91
TaqI TCGA 3 cut(s) 24, 144, 417
TasI AATT 3 cut(s) 95, 222, 335
TfiI GAWTC 2 cut(s) 187, 272
Tru1I TTAA 4 cut(s) 84, 197, 225, 405
Tru9I TTAA 4 cut(s) 84, 197, 225, 405
TscAI CASTG 1 cut(s) 236
TspDTI ATGAA 3 cut(s) 17, 130, 279
TspGWI ACGGA 2 cut(s) 291, 402
TspRI CASTG 1 cut(s) 236
XceI RCATGY 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.