Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8204816.1

Orthogroup ID

OG0000428

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 661

Gene Structure 661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8204816.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atgaatgcaaaaaatttgactactctgaatttggaatatctgaggattaaggaaattgacagtgctgagactgagcctttgtgtccctctttgaaaactttgtccctcaagaccgtgcattttgatgacaaggctctcttctacttagttttggggtgccctgctgtggagtacttgtcattaacatcatgttcctctgacaccccggtgcttcatgtttcaagttccagtctcagatccttagaagtcaagaattgtgatgctgagcagattgaagttgataaagctacaaatcttgagtcttttacatttgtttcaaagtttcctctccttcagagtataaccttaaatgatactatcaacttgaattatatcaaaatccgtgctcagtacctgacctactttggattatttggatgccaagatcatttgaatgctacagttaatactccaagtttacatcaccttgatatccatgctcatctgacagccaaagtttctgtcaatgctccaaacttatggttggccagcatcacacttgaggaagaagaagtttccaactataactggtcctggaaacattttgctactttctgtgactttcttaaagcattctgctccaaaaatataatccttgttatgcgcgactttaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TAF TAF6_C

Protein Analysis

218

Amino Acids

24.7

Weight (kDa)

5.72

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000428)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica	MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica	Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis	pycom17g10120
rosa_chinensis	RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora	Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii	Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa	Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha	Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana	Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	156
AccII	CGCG	1 cut(s)	645
AclWI	GGATC	1 cut(s)	231
AcoI	YGGCCR	1 cut(s)	525
AcsI	RAATTY	2 cut(s)	13, 28
AcuI	CTGAAG	1 cut(s)	317
AfaI	GTAC	2 cut(s)	173, 392
AfiI	CCNNNNNNNGG	1 cut(s)	166
AgsI	TTSAA	6 cut(s)	94, 222, 275, 318, 367, 433
AjnI	CCWGG	1 cut(s)	572
AleI	CACNNNNGTG	1 cut(s)	206
AluBI	AGCT	1 cut(s)	287
AluI	AGCT	1 cut(s)	287
Alw21I	GWGCWC	1 cut(s)	388
Alw26I	GTCTC	2 cut(s)	62, 236
AlwI	GGATC	1 cut(s)	231
AlwNI	CAGNNNCTG	1 cut(s)	394
AoxI	GGCC	1 cut(s)	525
ApoI	RAATTY	2 cut(s)	13, 28
ArsI	GACNNNNNNTTYG	6 cut(s)	61, 93, 284, 316, 486, 518
AspLEI	GCGC	1 cut(s)	645
AspS9I	GGNCC	1 cut(s)	570
AsuC2I	CCSGG	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	455
AvaII	GGWCC	1 cut(s)	570
BaeGI	GKGCMC	1 cut(s)	161
BalI	TGGCCA	1 cut(s)	527
BanI	GGYRCC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	388
BciT130I	CCWGG	1 cut(s)	574
BcnI	CCSGG	1 cut(s)	206
BcoDI	GTCTC	2 cut(s)	62, 236
BfmI	CTRYAG	1 cut(s)	438
BlpI	GCTNAGC	1 cut(s)	264
BmcAI	AGTACT	1 cut(s)	173
Bme1390I	CCNGG	2 cut(s)	206, 574
Bme18I	GGWCC	1 cut(s)	570
BmgT120I	GGNCC	1 cut(s)	570
BmiI	GGNNCC	1 cut(s)	158
BmrFI	CCNGG	2 cut(s)	206, 574
BmsI	GCATC	3 cut(s)	250, 407, 540
Bpu1102I	GCTNAGC	1 cut(s)	264
BpuEI	CTTGAG	3 cut(s)	92, 317, 560
BpuMI	CCSGG	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	204
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse1I	ACTGG	2 cut(s)	228, 572
BseBI	CCWGG	1 cut(s)	574
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	1 cut(s)	422
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMII	CTCAG	6 cut(s)	32, 57, 63, 247, 255, 401
BseNI	ACTGG	2 cut(s)	228, 572
BseSI	GKGCMC	1 cut(s)	161
Bsh1236I	CGCG	1 cut(s)	645
BshFI	GGCC	1 cut(s)	527
BshNI	GGYRCC	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	388
BsiSI	CCGG	1 cut(s)	206
BslFI	GGGAC	2 cut(s)	69, 88
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	2 cut(s)	62, 236
BsmFI	GGGAC	2 cut(s)	69, 88
BsmI	GAATGC	3 cut(s)	10, 439, 611
BsnI	GGCC	1 cut(s)	527
Bsp1286I	GDGCHC	2 cut(s)	161, 388
Bsp143I	GATC	2 cut(s)	236, 424
Bsp1720I	GCTNAGC	1 cut(s)	264
BspANI	GGCC	1 cut(s)	527
BspCNI	CTCAG	6 cut(s)	33, 58, 64, 246, 256, 400
BspFNI	CGCG	1 cut(s)	645
BspLI	GGNNCC	1 cut(s)	158
BspPI	GGATC	1 cut(s)	231
BspT107I	GGYRCC	1 cut(s)	156
BsrI	ACTGG	2 cut(s)	228, 572
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	2 cut(s)	236, 424
Bst2UI	CCWGG	1 cut(s)	574
Bst4CI	ACNGT	3 cut(s)	62, 115, 442
Bst6I	CTCTTC	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	529
BstDEI	CTNAG	8 cut(s)	41, 66, 72, 145, 233, 241, 264, 387
BstF5I	GGATG	1 cut(s)	422
BstFNI	CGCG	1 cut(s)	645
BstHHI	GCGC	1 cut(s)	645
BstKTI	GATC	2 cut(s)	239, 427
BstMAI	GTCTC	2 cut(s)	62, 236
BstMBI	GATC	2 cut(s)	236, 424
BstNI	CCWGG	1 cut(s)	574
BstSCI	CCNGG	2 cut(s)	204, 572
BstSFI	CTRYAG	1 cut(s)	438
BstSLI	GKGCMC	1 cut(s)	161
BstUI	CGCG	1 cut(s)	645
BstX2I	RGATCY	1 cut(s)	236
BstXI	CCANNNNNNTGG	1 cut(s)	519
BstYI	RGATCY	1 cut(s)	236
BsuRI	GGCC	1 cut(s)	527
BtsCI	GGATG	1 cut(s)	422
BtsIMutI	CAGTG	1 cut(s)	67
Cac8I	GCNNGC	1 cut(s)	529
CaiI	CAGNNNCTG	1 cut(s)	394
CfoI	GCGC	1 cut(s)	645
Cfr13I	GGNCC	1 cut(s)	570
Csp6I	GTAC	2 cut(s)	172, 391
CviAII	CATG	3 cut(s)	189, 215, 476
CviJI	RGCY	5 cut(s)	76, 134, 287, 491, 527
CviKI_1	RGCY	5 cut(s)	76, 134, 287, 491, 527
CviQI	GTAC	2 cut(s)	172, 391
DdeI	CTNAG	8 cut(s)	41, 66, 72, 145, 233, 241, 264, 387
DpnI	GATC	2 cut(s)	238, 426
DpnII	GATC	2 cut(s)	236, 424
EaeI	YGGCCR	1 cut(s)	525
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
Eco32I	GATATC	1 cut(s)	472
Eco47I	GGWCC	1 cut(s)	570
Eco57I	CTGAAG	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	572
EcoRV	GATATC	1 cut(s)	472
FaeI	CATG	3 cut(s)	192, 218, 479
FaiI	YATR	9 cut(s)	190, 216, 341, 372, 477, 520, 564, 629, 641
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FaqI	GGGAC	2 cut(s)	69, 88
FatI	CATG	3 cut(s)	188, 214, 475
FokI	GGATG	1 cut(s)	429
GlaI	GCGC	1 cut(s)	644
HaeIII	GGCC	1 cut(s)	527
HapII	CCGG	1 cut(s)	206
HhaI	GCGC	1 cut(s)	645
Hin1II	CATG	3 cut(s)	192, 218, 479
Hin6I	GCGC	1 cut(s)	643
HinP1I	GCGC	1 cut(s)	643
HinfI	GANTC	1 cut(s)	299
HpaII	CCGG	1 cut(s)	206
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	1 cut(s)	458
Hpy188I	TCNGA	6 cut(s)	27, 42, 199, 236, 336, 486
Hpy188III	TCNNGA	3 cut(s)	109, 250, 296
Hpy8I	GTNNAC	1 cut(s)	458
HpyAV	CCTTC	1 cut(s)	341
HpyCH4III	ACNGT	3 cut(s)	62, 115, 442
HpyCH4V	TGCA	2 cut(s)	8, 118
HpyF3I	CTNAG	8 cut(s)	41, 66, 72, 145, 233, 241, 264, 387
Hsp92II	CATG	3 cut(s)	192, 218, 479
HspAI	GCGC	1 cut(s)	643
Kzo9I	GATC	2 cut(s)	236, 424
LmnI	GCTCC	2 cut(s)	514, 623
LpnPI	CCDG	8 cut(s)	174, 219, 241, 407, 541, 553, 559, 586
LweI	GCATC	3 cut(s)	250, 407, 540
MaeIII	GTNAC	1 cut(s)	596
MalI	GATC	2 cut(s)	238, 426
MboI	GATC	2 cut(s)	236, 424
MboII	GAAGA	3 cut(s)	130, 557, 560
MflI	RGATCY	1 cut(s)	236
MhlI	GDGCHC	2 cut(s)	161, 388
MlsI	TGGCCA	1 cut(s)	527
MluCI	AATT	5 cut(s)	13, 28, 54, 253, 367
MluNI	TGGCCA	1 cut(s)	527
MlyI	GAGTC	1 cut(s)	308
MmeI	TCCRAC	1 cut(s)	582
MnlI	CCTC	6 cut(s)	36, 97, 116, 205, 336, 535
Mox20I	TGGCCA	1 cut(s)	527
MscI	TGGCCA	1 cut(s)	527
MseI	TTAA	6 cut(s)	48, 182, 347, 444, 606, 651
MslI	CAYNNNNRTG	3 cut(s)	123, 206, 432
Msp20I	TGGCCA	1 cut(s)	527
MspI	CCGG	1 cut(s)	206
MspR9I	CCNGG	2 cut(s)	206, 574
Mva1269I	GAATGC	3 cut(s)	10, 439, 611
MvaI	CCWGG	1 cut(s)	574
MvnI	CGCG	1 cut(s)	645
NciI	CCSGG	1 cut(s)	206
NdeII	GATC	2 cut(s)	236, 424
NlaIII	CATG	3 cut(s)	192, 218, 479
NlaIV	GGNNCC	1 cut(s)	158
NmuCI	GTSAC	1 cut(s)	596
OliI	CACNNNNGTG	1 cut(s)	206
PctI	GAATGC	3 cut(s)	10, 439, 611
PfoI	TCCNGGA	1 cut(s)	572
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
Psp6I	CCWGG	1 cut(s)	572
PspGI	CCWGG	1 cut(s)	572
PspN4I	GGNNCC	1 cut(s)	158
PspPI	GGNCC	1 cut(s)	570
PstNI	CAGNNNCTG	1 cut(s)	394
PsuI	RGATCY	1 cut(s)	236
RsaI	GTAC	2 cut(s)	173, 392
RsaNI	GTAC	2 cut(s)	172, 391
RseI	CAYNNNNRTG	3 cut(s)	123, 206, 432
SaqAI	TTAA	6 cut(s)	48, 182, 347, 444, 606, 651
Sau3AI	GATC	2 cut(s)	236, 424
Sau96I	GGNCC	1 cut(s)	570
ScaI	AGTACT	1 cut(s)	173
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	2 cut(s)	206, 574
SduI	GDGCHC	2 cut(s)	161, 388
SetI	ASST	5 cut(s)	289, 347, 396, 401, 468
SfaNI	GCATC	3 cut(s)	250, 407, 540
SfcI	CTRYAG	1 cut(s)	438
SinI	GGWCC	1 cut(s)	570
SmiMI	CAYNNNNRTG	3 cut(s)	123, 206, 432
SmlI	CTYRAG	3 cut(s)	107, 296, 539
SmoI	CTYRAG	3 cut(s)	107, 296, 539
Sse9I	AATT	5 cut(s)	13, 28, 54, 253, 367
StyD4I	CCNGG	2 cut(s)	204, 572
TaaI	ACNGT	3 cut(s)	62, 115, 442
TasI	AATT	5 cut(s)	13, 28, 54, 253, 367
TatI	WGTACW	1 cut(s)	171
Tru1I	TTAA	6 cut(s)	48, 182, 347, 444, 606, 651
Tru9I	TTAA	6 cut(s)	48, 182, 347, 444, 606, 651
TscAI	CASTG	1 cut(s)	67
TseFI	GTSAC	1 cut(s)	596
Tsp45I	GTSAC	1 cut(s)	596
TspDTI	ATGAA	2 cut(s)	17, 203
TspGWI	ACGGA	1 cut(s)	371
TspRI	CASTG	1 cut(s)	67
VpaK11BI	GGWCC	1 cut(s)	570
XapI	RAATTY	2 cut(s)	13, 28
ZrmI	AGTACT	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.