Rh3AG050300

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000428
Physical Location & Seq
Forward (+)
3484277 .. 3503255
18979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG050300.1

Sequence Viewer

Length: 441 bp
ATGAGCAAAGACCCGAGAGCCTTCTTCTTCCCTTCTTTGAAAACTATGTCCCTCAAAGATGTTCAGTTTGATTCCGATGCTCTCATCTCCCTGGTTTGGGACTGCCCTTTGCTCGAGTATCTTACATTAACTTCATGTCGTTTTGATTGGGACGACATTGTCATTGCAAGTAAAAGTCTCAAATCCTTGGAACTTAAGCATTGCGAGACTTATCAAGTTCATCTTTATGCTGACAATCTTGAACATCTTACGGTCTTCTCATCAACATCTTCTCTCGACAATATGTACTTGGAAAGATGCTTCAATTTGAAATATATGAACATTTGTGATCCACATTTGTATCACCTTTCTGTTCAAGGATGCCATGATGTGAATGGTACCATCGATGCTCCAAGGTTACATGGCTTTATTTTCCGAGCTCTCACCAAAGGATGTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

146

Amino Acids

16.85

Weight (kDa)

5.72

Isoelectric Point (pI)

35.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 5 - 91 6e-12 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 158
Acc65I GGTACC 1 cut(s) 377
AccB1I GGYRCC 1 cut(s) 377
AclWI GGATC 1 cut(s) 323
AfaI GTAC 2 cut(s) 287, 379
AfiI CCNNNNNNNGG 2 cut(s) 96, 97
AflII CTTAAG 1 cut(s) 194
AgsI TTSAA 5 cut(s) 40, 242, 304, 310, 356
AjnI CCWGG 1 cut(s) 90
AluBI AGCT 1 cut(s) 419
AluI AGCT 1 cut(s) 419
Alw21I GWGCWC 1 cut(s) 421
Alw26I GTCTC 2 cut(s) 182, 200
AlwI GGATC 1 cut(s) 323
Ama87I CYCGRG 2 cut(s) 13, 113
Asp718I GGTACC 1 cut(s) 377
AsuHPI GGTGA 2 cut(s) 335, 415
AvaI CYCGRG 2 cut(s) 13, 113
BaeI ACNNNNGTAYC 2 cut(s) 323, 356
BanI GGYRCC 1 cut(s) 377
BanII GRGCYC 1 cut(s) 421
BbsI GAAGAC 1 cut(s) 247
Bbv12I GWGCWC 1 cut(s) 421
BccI CCATC 1 cut(s) 389
BciT130I CCWGG 1 cut(s) 92
BcoDI GTCTC 2 cut(s) 182, 200
BfrI CTTAAG 1 cut(s) 194
Bme1390I CCNGG 1 cut(s) 92
BmeT110I CYCGRG 2 cut(s) 13, 113
BmiI GGNNCC 1 cut(s) 379
BmrFI CCNGG 1 cut(s) 92
BmsI GCATC 4 cut(s) 67, 287, 350, 376
BpiI GAAGAC 1 cut(s) 247
Bsa29I ATCGAT 1 cut(s) 384
BsaJI CCNNGG 3 cut(s) 90, 186, 392
Bsc4I CCNNNNNNNGG 2 cut(s) 96, 97
Bse3DI GCAATG 2 cut(s) 162, 199
BseBI CCWGG 1 cut(s) 92
BseCI ATCGAT 1 cut(s) 384
BseDI CCNNGG 3 cut(s) 90, 186, 392
BseGI GGATG 2 cut(s) 365, 437
BseLI CCNNNNNNNGG 2 cut(s) 96, 97
BseMI GCAATG 2 cut(s) 162, 199
BshNI GGYRCC 1 cut(s) 377
BshVI ATCGAT 1 cut(s) 384
BsiHKAI GWGCWC 1 cut(s) 421
BsiHKCI CYCGRG 2 cut(s) 13, 113
BslFI GGGAC 3 cut(s) 34, 113, 164
BslI CCNNNNNNNGG 2 cut(s) 96, 97
BsmAI GTCTC 2 cut(s) 182, 200
BsmFI GGGAC 3 cut(s) 34, 113, 164
BsoBI CYCGRG 2 cut(s) 13, 113
Bsp1286I GDGCHC 1 cut(s) 421
Bsp143I GATC 1 cut(s) 328
BspDI ATCGAT 1 cut(s) 384
BspLI GGNNCC 1 cut(s) 379
BspPI GGATC 1 cut(s) 323
BspT107I GGYRCC 1 cut(s) 377
BspTI CTTAAG 1 cut(s) 194
BsrDI GCAATG 2 cut(s) 162, 199
BssECI CCNNGG 3 cut(s) 90, 186, 392
BssMI GATC 1 cut(s) 328
BssT1I CCWWGG 2 cut(s) 186, 392
Bst2UI CCWGG 1 cut(s) 92
Bst4CI ACNGT 1 cut(s) 253
BstAFI CTTAAG 1 cut(s) 194
BstF5I GGATG 2 cut(s) 365, 437
BstKTI GATC 1 cut(s) 331
BstMAI GTCTC 2 cut(s) 182, 200
BstMBI GATC 1 cut(s) 328
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 90
BstV2I GAAGAC 1 cut(s) 247
Bsu15I ATCGAT 1 cut(s) 384
BsuTUI ATCGAT 1 cut(s) 384
BtsCI GGATG 2 cut(s) 365, 437
ClaI ATCGAT 1 cut(s) 384
Csp6I GTAC 2 cut(s) 286, 378
CviAII CATG 3 cut(s) 135, 365, 401
CviJI RGCY 3 cut(s) 20, 405, 419
CviKI_1 RGCY 3 cut(s) 20, 405, 419
CviQI GTAC 2 cut(s) 286, 378
DpnI GATC 1 cut(s) 330
DpnII GATC 1 cut(s) 328
DrdI GACNNNNNNGTC 1 cut(s) 158
DseDI GACNNNNNNGTC 1 cut(s) 158
Ecl136II GAGCTC 1 cut(s) 419
Eco130I CCWWGG 2 cut(s) 186, 392
Eco24I GRGCYC 1 cut(s) 421
Eco53kI GAGCTC 1 cut(s) 419
Eco88I CYCGRG 2 cut(s) 13, 113
EcoICRI GAGCTC 1 cut(s) 419
EcoRII CCWGG 1 cut(s) 90
EcoT14I CCWWGG 2 cut(s) 186, 392
EcoT38I GRGCYC 1 cut(s) 421
ErhI CCWWGG 2 cut(s) 186, 392
FaeI CATG 3 cut(s) 138, 368, 404
FaiI YATR 9 cut(s) 47, 136, 228, 284, 315, 317, 366, 402, 437
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FaqI GGGAC 3 cut(s) 34, 113, 164
FatI CATG 3 cut(s) 134, 364, 400
FokI GGATG 1 cut(s) 372
FriOI GRGCYC 1 cut(s) 421
Hin1II CATG 3 cut(s) 138, 368, 404
HinfI GANTC 1 cut(s) 71
HphI GGTGA 2 cut(s) 335, 415
Hpy188I TCNGA 2 cut(s) 76, 416
Hpy188III TCNNGA 2 cut(s) 239, 275
HpyAV CCTTC 2 cut(s) 31, 42
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4V TGCA 1 cut(s) 167
Hsp92II CATG 3 cut(s) 138, 368, 404
KpnI GGTACC 1 cut(s) 381
Kzo9I GATC 1 cut(s) 328
LmnI GCTCC 1 cut(s) 394
LpnPI CCDG 2 cut(s) 77, 104
LweI GCATC 4 cut(s) 67, 287, 350, 376
MaeIII GTNAC 1 cut(s) 396
MalI GATC 1 cut(s) 330
MboI GATC 1 cut(s) 328
MboII GAAGA 4 cut(s) 16, 19, 247, 261
MhlI GDGCHC 1 cut(s) 421
MluCI AATT 1 cut(s) 304
MnlI CCTC 1 cut(s) 62
MseI TTAA 2 cut(s) 128, 195
MslI CAYNNNNRTG 1 cut(s) 225
MspCI CTTAAG 1 cut(s) 194
MspR9I CCNGG 1 cut(s) 92
MvaI CCWGG 1 cut(s) 92
NdeII GATC 1 cut(s) 328
NlaIII CATG 3 cut(s) 138, 368, 404
NlaIV GGNNCC 1 cut(s) 379
PaeR7I CTCGAG 1 cut(s) 113
PfeI GAWTC 1 cut(s) 71
PflFI GACNNNGTC 1 cut(s) 158
Psp124BI GAGCTC 1 cut(s) 421
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 1 cut(s) 379
PspXI VCTCGAGB 1 cut(s) 113
PsyI GACNNNGTC 1 cut(s) 158
RsaI GTAC 2 cut(s) 287, 379
RsaNI GTAC 2 cut(s) 286, 378
RseI CAYNNNNRTG 1 cut(s) 225
SacI GAGCTC 1 cut(s) 421
SaqAI TTAA 2 cut(s) 128, 195
Sau3AI GATC 1 cut(s) 328
ScrFI CCNGG 1 cut(s) 92
SduI GDGCHC 1 cut(s) 421
SetI ASST 3 cut(s) 348, 398, 421
SfaNI GCATC 4 cut(s) 67, 287, 350, 376
Sfr274I CTCGAG 1 cut(s) 113
SlaI CTCGAG 1 cut(s) 113
SmiMI CAYNNNNRTG 1 cut(s) 225
SmlI CTYRAG 2 cut(s) 113, 194
SmoI CTYRAG 2 cut(s) 113, 194
Sse9I AATT 1 cut(s) 304
SstI GAGCTC 1 cut(s) 421
StyD4I CCNGG 1 cut(s) 90
StyI CCWWGG 2 cut(s) 186, 392
TaaI ACNGT 1 cut(s) 253
TaqI TCGA 3 cut(s) 114, 276, 384
TasI AATT 1 cut(s) 304
TatI WGTACW 1 cut(s) 285
TfiI GAWTC 1 cut(s) 71
Tru1I TTAA 2 cut(s) 128, 195
Tru9I TTAA 2 cut(s) 128, 195
TspDTI ATGAA 3 cut(s) 123, 209, 332
Tth111I GACNNNGTC 1 cut(s) 158
Vha464I CTTAAG 1 cut(s) 194
XcmI CCANNNNNNNNNTGG 1 cut(s) 371
XhoI CTCGAG 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.