FvH4_3g02591

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000428
Physical Location & Seq
Reverse (-)
1312993 .. 1315394
2402 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g02591.t1

Sequence Viewer

Length: 1413 bp
ATGGACGTCGTGAGTTCAATACGCCCTCCTTTACCTGACCTTGTTATCCACCACATTCTCCAAATCCTTCCTACTAAAGCTGCTGTTCGCATGAGCTTCCTTTCCAAGCAATGGGATGGAGTTTGGTGCTCGACCCCGGTATTGGATTTCGACGAGGGAGATGATCCCGGTAAGTATGACAACGACCACATCGATCTTAACAAGATTCTCGAACATAGAAAGTTCATCAACGTCGTGGAAAAGTGGCTGGAATTCTGTGACCAAGAGGAGCAAAAACAAGTCTTATTGAATAAATTCAGACTTCGCATGATGAGGTACGTACCCGGAGATTATGACTCAATAGACAAATGCCTGAGTTATGTATTCGAGAGAAACGTCAAGGAGTTAGATATCAGTCTTAGAATCAGTCGATTATTCTGGGGATTTTCTTGGCAGATCCGGTTAGGATTCTACTACTGCGTATCTAGGACGACCCTTGCAAATGCAAAAACCCTAACTGTTTTGAAGTTGGAGTATGTGAGGATAAAAAATCTTCGATTAACCAAAAAACAGAGAAGGAGAATAAAAAATCTTGGCAGTTCTATGCCTGTAGATACAAGACTACTTTTGCCCAATTTGAAAACTATGTACTTGAAAAACGTGCAGTTTGATAAACTTGCTCTCTTGTATTTGATCTTCGAGTGTCCTTCCATTCAAGGTTTGTCATTAACTTCATGCCATTGTGAAAACTCGGATGACTTTCATGTTATAAGTTCGAGTCTCAAATCACTGGAAATTGAGCATTGCGATTCTCGGACTATTTGGGTTGATGAAGCTATGAATCTTGAATCTTTTACGGTTTCATCAAACTCTTCGTTTCTGGATAATATTACCTTGAGTGATACCTCCAACTTGAAACACATCAACGTCCATGCGGAGCACTTGAAGCACCTTACCGTAAGTCAAAGCCATGATTGTTTGAAGGCCACAATCAATACTCCAAATCTAGTTACTTTCAGTTTCGTAGGGTTTTCGAAGTCCAAGATTCTTGTGAAAGCTCCAAATTTAAAAGTTACACGAGTCTTTTTTTCGGAACTTAGGGATAGAGACGTTCTGGGGTTTAACAGGTCATTCAGACATTTTACAACACTCAGAGATTTTCTTAAGAATATTGGTTTTTCAAAGAGGATCGTCCTTTATATTCGTAATTATAAGGCTCTCCTCTTTCCTGAAGATTTTAGGAAGAACTTCTCTTCACCATTGTATGGTGTCAAGCACCTCGTTGTTGTGATGCCGAATTCTCAAAAGGAGGTGAGCGATATTCCTGAGTTCCGCCACGCATTGGGTTGGATGGCACCTTCAATAAATCAGTTGTCTCTTGGAGAAGAGAATCACCAAGAATACCTTGCTCATACTTCCTTGGTAGGGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

471

Amino Acids

54.57

Weight (kDa)

8.95

Isoelectric Point (pI)

47.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 198 - 311 1.1e-07 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 749, 1191
AatII GACGTC 1 cut(s) 9
AccB1I GGYRCC 1 cut(s) 1333
AccB7I CCANNNNNTGG 3 cut(s) 111, 1244, 1321
AciI CCGC 2 cut(s) 914, 1312
AclWI GGATC 3 cut(s) 158, 430, 1175
AcsI RAATTY 4 cut(s) 251, 293, 1042, 1276
AcuI CTGAAG 1 cut(s) 1230
AcyI GRCGYC 1 cut(s) 6
AfaI GTAC 3 cut(s) 317, 321, 629
AfiI CCNNNNNNNGG 5 cut(s) 111, 142, 1244, 1321, 1404
AflII CTTAAG 1 cut(s) 1142
AluBI AGCT 4 cut(s) 80, 96, 815, 1037
AluI AGCT 4 cut(s) 80, 96, 815, 1037
Alw21I GWGCWC 2 cut(s) 131, 921
Alw26I GTCTC 3 cut(s) 764, 1080, 1359
AlwI GGATC 3 cut(s) 158, 430, 1175
AoxI GGCC 1 cut(s) 963
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 4 cut(s) 251, 293, 1042, 1276
Asp700I GAANNNNTTC 2 cut(s) 293, 1226
AsuC2I CCSGG 3 cut(s) 137, 168, 324
AsuHPI GGTGA 3 cut(s) 1227, 1303, 1364
AsuII TTCGAA 1 cut(s) 1013
BanI GGYRCC 1 cut(s) 1333
BarI GAAGNNNNNNTAC 2 cut(s) 659, 691
BauI CACGAG 1 cut(s) 1056
Bbv12I GWGCWC 2 cut(s) 131, 921
BbvI GCAGC 1 cut(s) 67
BccI CCATC 2 cut(s) 110, 1324
BcnI CCSGG 3 cut(s) 137, 168, 324
BcoDI GTCTC 3 cut(s) 764, 1080, 1359
BfaI CTAG 2 cut(s) 465, 986
BfmI CTRYAG 1 cut(s) 588
BfrI CTTAAG 1 cut(s) 1142
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 3 cut(s) 137, 168, 324
BmiI GGNNCC 1 cut(s) 1335
BmrFI CCNGG 3 cut(s) 137, 168, 324
BmsI GCATC 1 cut(s) 1260
Bpu14I TTCGAA 1 cut(s) 1013
BpuEI CTTGAG 1 cut(s) 895
BpuMI CCSGG 3 cut(s) 137, 168, 324
Bsa29I ATCGAT 1 cut(s) 192
BsaAI YACGTR 1 cut(s) 319
BsaHI GRCGYC 1 cut(s) 6
BsaJI CCNNGG 2 cut(s) 135, 1398
BsaWI WCCGGW 1 cut(s) 438
Bsc4I CCNNNNNNNGG 5 cut(s) 111, 142, 1244, 1321, 1404
Bse1I ACTGG 1 cut(s) 774
Bse3DI GCAATG 2 cut(s) 116, 781
BseCI ATCGAT 1 cut(s) 192
BseDI CCNNGG 2 cut(s) 135, 1398
BseGI GGATG 3 cut(s) 121, 739, 1335
BseLI CCNNNNNNNGG 5 cut(s) 111, 142, 1244, 1321, 1404
BseMI GCAATG 2 cut(s) 116, 781
BseMII CTCAG 3 cut(s) 344, 1144, 1296
BseNI ACTGG 1 cut(s) 774
BseRI GAGGAG 2 cut(s) 281, 1190
BseXI GCAGC 1 cut(s) 67
BsgI GTGCAG 1 cut(s) 662
BshFI GGCC 1 cut(s) 965
BshNI GGYRCC 1 cut(s) 1333
BshVI ATCGAT 1 cut(s) 192
BsiHKAI GWGCWC 2 cut(s) 131, 921
BsiSI CCGG 4 cut(s) 137, 168, 324, 439
BslI CCNNNNNNNGG 5 cut(s) 111, 142, 1244, 1321, 1404
BsmAI GTCTC 3 cut(s) 764, 1080, 1359
BsmBI CGTCTC 1 cut(s) 1080
BsnI GGCC 1 cut(s) 965
Bsp119I TTCGAA 1 cut(s) 1013
Bsp1286I GDGCHC 2 cut(s) 131, 921
Bsp143I GATC 5 cut(s) 163, 193, 435, 672, 1167
BspACI CCGC 2 cut(s) 914, 1312
BspANI GGCC 1 cut(s) 965
BspCNI CTCAG 3 cut(s) 345, 1143, 1297
BspDI ATCGAT 1 cut(s) 192
BspLI GGNNCC 1 cut(s) 1335
BspPI GGATC 3 cut(s) 158, 430, 1175
BspT104I TTCGAA 1 cut(s) 1013
BspT107I GGYRCC 1 cut(s) 1333
BspTI CTTAAG 1 cut(s) 1142
BsrDI GCAATG 2 cut(s) 116, 781
BsrI ACTGG 1 cut(s) 774
BssECI CCNNGG 2 cut(s) 135, 1398
BssMI GATC 5 cut(s) 163, 193, 435, 672, 1167
BssNI GRCGYC 1 cut(s) 6
BssSI CACGAG 1 cut(s) 1056
BssT1I CCWWGG 1 cut(s) 1398
Bst2BI CACGAG 1 cut(s) 1056
Bst4CI ACNGT 3 cut(s) 499, 838, 937
Bst6I CTCTTC 3 cut(s) 856, 1237, 1359
BstACI GRCGYC 1 cut(s) 6
BstAFI CTTAAG 1 cut(s) 1142
BstBAI YACGTR 1 cut(s) 319
BstBI TTCGAA 1 cut(s) 1013
BstDEI CTNAG 5 cut(s) 353, 398, 1076, 1130, 1305
BstF5I GGATG 3 cut(s) 121, 739, 1335
BstKTI GATC 5 cut(s) 166, 196, 438, 675, 1170
BstMAI GTCTC 3 cut(s) 764, 1080, 1359
BstMBI GATC 5 cut(s) 163, 193, 435, 672, 1167
BstMWI GCNNNNNNNGC 1 cut(s) 925
BstSCI CCNGG 3 cut(s) 135, 166, 322
BstSFI CTRYAG 1 cut(s) 588
BstSNI TACGTA 1 cut(s) 319
BstV1I GCAGC 1 cut(s) 67
BstX2I RGATCY 1 cut(s) 435
BstYI RGATCY 1 cut(s) 435
Bsu15I ATCGAT 1 cut(s) 192
BsuRI GGCC 1 cut(s) 965
BsuTUI ATCGAT 1 cut(s) 192
BtsCI GGATG 3 cut(s) 121, 739, 1335
BtsIMutI CAGTG 1 cut(s) 767
ClaI ATCGAT 1 cut(s) 192
Csp6I GTAC 3 cut(s) 316, 320, 628
CviAII CATG 6 cut(s) 91, 307, 714, 743, 911, 950
CviJI RGCY 9 cut(s) 80, 96, 247, 815, 948, 965, 1037, 1196, 1408
CviKI_1 RGCY 9 cut(s) 80, 96, 247, 815, 948, 965, 1037, 1196, 1408
CviQI GTAC 3 cut(s) 316, 320, 628
DdeI CTNAG 5 cut(s) 353, 398, 1076, 1130, 1305
DpnI GATC 5 cut(s) 165, 195, 437, 674, 1169
DpnII GATC 5 cut(s) 163, 193, 435, 672, 1167
DraI TTTAAA 1 cut(s) 1047
Eam1104I CTCTTC 3 cut(s) 856, 1237, 1359
EarI CTCTTC 3 cut(s) 856, 1237, 1359
EciI GGCGGA 1 cut(s) 1301
Eco105I TACGTA 1 cut(s) 319
Eco130I CCWWGG 1 cut(s) 1398
Eco32I GATATC 1 cut(s) 391
Eco57I CTGAAG 1 cut(s) 1230
EcoRI GAATTC 2 cut(s) 251, 1276
EcoRV GATATC 1 cut(s) 391
EcoT14I CCWWGG 1 cut(s) 1398
ErhI CCWWGG 1 cut(s) 1398
Esp3I CGTCTC 1 cut(s) 1080
FaeI CATG 6 cut(s) 94, 310, 717, 746, 914, 953
FalI AAGNNNNNCTT 2 cut(s) 1368, 1400
FatI CATG 6 cut(s) 90, 306, 713, 742, 910, 949
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 3 cut(s) 128, 746, 1342
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 2 cut(s) 465, 986
GluI GCNGC 1 cut(s) 81
HaeIII GGCC 1 cut(s) 965
HapII CCGG 4 cut(s) 137, 168, 324, 439
Hin1I GRCGYC 1 cut(s) 6
Hin1II CATG 6 cut(s) 94, 310, 717, 746, 914, 953
HpaII CCGG 4 cut(s) 137, 168, 324, 439
HphI GGTGA 3 cut(s) 1227, 1303, 1364
Hpy188I TCNGA 6 cut(s) 299, 733, 795, 1072, 1115, 1133
Hpy188III TCNNGA 7 cut(s) 10, 209, 367, 824, 860, 1208, 1304
Hpy99I CGWCG 3 cut(s) 11, 155, 236
HpyAV CCTTC 5 cut(s) 77, 549, 696, 955, 1347
HpyCH4III ACNGT 3 cut(s) 499, 838, 937
HpyCH4IV ACGT 7 cut(s) 6, 231, 318, 375, 639, 906, 1089
HpyCH4V TGCA 3 cut(s) 479, 485, 643
HpyF10VI GCNNNNNNNGC 1 cut(s) 925
HpyF3I CTNAG 5 cut(s) 353, 398, 1076, 1130, 1305
HpySE526I ACGT 7 cut(s) 6, 231, 318, 375, 639, 906, 1089
Hsp92I GRCGYC 1 cut(s) 6
Hsp92II CATG 6 cut(s) 94, 310, 717, 746, 914, 953
Kzo9I GATC 5 cut(s) 163, 193, 435, 672, 1167
LmnI GCTCC 3 cut(s) 268, 916, 1042
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 1 cut(s) 1260
MaeI CTAG 2 cut(s) 465, 986
MaeII ACGT 7 cut(s) 6, 231, 318, 375, 639, 906, 1089
MaeIII GTNAC 3 cut(s) 257, 988, 1051
MalI GATC 5 cut(s) 165, 195, 437, 674, 1169
MboI GATC 5 cut(s) 163, 193, 435, 672, 1167
MboII GAAGA 7 cut(s) 524, 667, 843, 1223, 1224, 1234, 1376
MflI RGATCY 1 cut(s) 435
MhlI GDGCHC 2 cut(s) 131, 921
MluCI AATT 7 cut(s) 251, 293, 613, 774, 1042, 1186, 1276
MlyI GAGTC 3 cut(s) 329, 766, 1068
MmeI TCCRAC 3 cut(s) 489, 912, 1307
MroXI GAANNNNTTC 2 cut(s) 293, 1226
MseI TTAA 6 cut(s) 198, 539, 707, 1046, 1101, 1143
MspCI CTTAAG 1 cut(s) 1142
MspI CCGG 4 cut(s) 137, 168, 324, 439
MspR9I CCNGG 3 cut(s) 137, 168, 324
MwoI GCNNNNNNNGC 1 cut(s) 925
NciI CCSGG 3 cut(s) 137, 168, 324
NdeII GATC 5 cut(s) 163, 193, 435, 672, 1167
NlaIII CATG 6 cut(s) 94, 310, 717, 746, 914, 953
NlaIV GGNNCC 1 cut(s) 1335
NmuCI GTSAC 1 cut(s) 257
NspV TTCGAA 1 cut(s) 1013
PcsI WCGNNNNNNNCGW 2 cut(s) 189, 372
PdmI GAANNNNTTC 2 cut(s) 293, 1226
PfeI GAWTC 8 cut(s) 205, 402, 447, 788, 820, 827, 1024, 1369
PflMI CCANNNNNTGG 3 cut(s) 111, 1244, 1321
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 3 cut(s) 329, 765, 1067
PpsI GAGTC 3 cut(s) 329, 765, 1067
Ppu21I YACGTR 1 cut(s) 319
PsiI TTATAA 2 cut(s) 749, 1191
PspN4I GGNNCC 1 cut(s) 1335
PsuI RGATCY 1 cut(s) 435
RsaI GTAC 3 cut(s) 317, 321, 629
RsaNI GTAC 3 cut(s) 316, 320, 628
SaqAI TTAA 6 cut(s) 198, 539, 707, 1046, 1101, 1143
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 5 cut(s) 163, 193, 435, 672, 1167
SchI GAGTC 3 cut(s) 329, 766, 1068
ScrFI CCNGG 3 cut(s) 137, 168, 324
SduI GDGCHC 2 cut(s) 131, 921
SfaNI GCATC 1 cut(s) 1260
SfcI CTRYAG 1 cut(s) 588
SfuI TTCGAA 1 cut(s) 1013
SmlI CTYRAG 2 cut(s) 874, 1142
SmoI CTYRAG 2 cut(s) 874, 1142
SnaBI TACGTA 1 cut(s) 319
Sse9I AATT 7 cut(s) 251, 293, 613, 774, 1042, 1186, 1276
SsiI CCGC 2 cut(s) 914, 1312
SspI AATATT 2 cut(s) 868, 1150
SspMI CTAG 2 cut(s) 465, 986
StyD4I CCNGG 3 cut(s) 135, 166, 322
StyI CCWWGG 1 cut(s) 1398
TaaI ACNGT 3 cut(s) 499, 838, 937
TaiI ACGT 7 cut(s) 9, 234, 321, 378, 642, 909, 1092
TasI AATT 7 cut(s) 251, 293, 613, 774, 1042, 1186, 1276
TatI WGTACW 1 cut(s) 627
TfiI GAWTC 8 cut(s) 205, 402, 447, 788, 820, 827, 1024, 1369
Tru1I TTAA 6 cut(s) 198, 539, 707, 1046, 1101, 1143
Tru9I TTAA 6 cut(s) 198, 539, 707, 1046, 1101, 1143
TscAI CASTG 1 cut(s) 774
TseFI GTSAC 1 cut(s) 257
TseI GCWGC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 6 cut(s) 214, 702, 731, 825, 831, 833
TspRI CASTG 1 cut(s) 774
Van91I CCANNNNNTGG 3 cut(s) 111, 1244, 1321
Vha464I CTTAAG 1 cut(s) 1142
XapI RAATTY 4 cut(s) 251, 293, 1042, 1276
XmnI GAANNNNTTC 2 cut(s) 293, 1226
XspI CTAG 2 cut(s) 465, 986
ZraI GACGTC 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.