Rh1CG272100

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000428
Physical Location & Seq
Forward (+)
53887317 .. 53892926
5610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG272100.1

Sequence Viewer

Length: 1164 bp
ATGACGGCAAGTTCAAGCCCGAAGAAAGCGGAAACCACTGCAGCTCATCAGGAATGTGATGAACAAAGCATGATGGCCATGGCTGTCAACCCAATACCGCCAGACTTGCCCGACCTTGTTATTCACCGAATCCTCCAACTCCTTCCCACTAAATCTGCTATCCGCATGAGCTTTCTTTCCAAGGAATGGCAAGATGCATGTTGTTTGGGCCCTGTAATAGATTTCGACGAGGGAGGTGATGACAACAACCTTCATGAACATACAAAGTTCGTCGAGAACATCCTCAATAGGTATTTGGAAATATGTGAGAAAGACCCAAACAAACAGAATTTAGAGAAATTCAAGCTCCACATGACCAGGTACTCATCTAGAGAAGCTGATATTGTAACTAAATGGTTGATATTTTCATGTAAGAGAAGCGTGAAGGAGTTTGATATTAGCCTTATGCCAGTTAGTGAATTGAACTACGACATGTTGTCATGTTTGGATCTTATCGAAGCAAGCAGGGCTGCAAGTCGCATGAAAAACTTGTTTTACTTGTCTCGGATGGCTCTTGTGAGTCTTGTCAATGCAAAATCTGTAACTACTCTAAATTTAGAGTATGTGAGAATGAAGAAAATCTACACTAAGCATCCTATATCTGTTGGTCTGCTTCCCTCTTTGAAATCCATGTCCTTCAAGAGGGTGCATTTTGACTACGAAGCTCTCCTCTCCTTAATTTCTGAGTGCCCTTTCATTGAGCACTTGTCACTAACTTCATGTTCTTTCCAAGGGGACATTTATATGCGGAGTTCCAGTCTCAAATCTTTGGAAATTGACCGATGCGAGGCTCTTTTAGTTCGAGTCTATGAAGCTATAAATCTTAAATCTCTTTCAGTTGTATCAGGTATCGGTTCATCTGAATTTTCGCAGCTTGAGCAGGTGATATTTAGAGATTGCCTCAAATTGAAATGTATGAACATACATGCTTCGCACTTGCGTTTCCTTAATTTAGATGGATGCCATAATGTGAAAGGCACAATCGATGCTCCAAAGCTCGAATTTTTCAATTTCGTTGGTTACTTGAAGTGCAAGTTCTCTTTGAAAGCTCCAAATCTGAGGATGACCCGCATTGAACTAATCGAAAATTGGGATAGAGAAGCAGCCACTTCCAACAGGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box LRR_2

Protein Analysis

387

Amino Acids

44.22

Weight (kDa)

7.53

Isoelectric Point (pI)

51.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 35 - 67 4.9e-07 F-box domain
LRR_At5g56370 PF24758 186 - 320 4.6e-09 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 910
Acc36I ACCTGC 1 cut(s) 910
AccB7I CCANNNNNTGG 1 cut(s) 186
AciI CCGC 5 cut(s) 29, 98, 163, 787, 1108
AclWI GGATC 1 cut(s) 495
AcoI YGGCCR 1 cut(s) 75
AcsI RAATTY 5 cut(s) 328, 338, 592, 902, 1040
AfaI GTAC 1 cut(s) 362
AfiI CCNNNNNNNGG 3 cut(s) 186, 681, 826
AflIII ACRYGT 1 cut(s) 471
AhdI GACNNNNNGTC 1 cut(s) 475
AjnI CCWGG 1 cut(s) 356
AluBI AGCT 9 cut(s) 44, 171, 346, 377, 704, 854, 913, 1036, 1088
AluI AGCT 9 cut(s) 44, 171, 346, 377, 704, 854, 913, 1036, 1088
Alw21I GWGCWC 1 cut(s) 744
Alw26I GTCTC 2 cut(s) 546, 803
AlwI GGATC 1 cut(s) 495
AoxI GGCC 2 cut(s) 75, 208
ApaI GGGCCC 1 cut(s) 212
ApeKI GCWGC 4 cut(s) 41, 509, 910, 1142
ApoI RAATTY 5 cut(s) 328, 338, 592, 902, 1040
AspS9I GGNCC 2 cut(s) 208, 209
AsuHPI GGTGA 3 cut(s) 116, 248, 934
BaeGI GKGCMC 2 cut(s) 212, 731
BalI TGGCCA 1 cut(s) 77
BanII GRGCYC 1 cut(s) 212
BarI GAAGNNNNNNTAC 2 cut(s) 605, 637
Bbv12I GWGCWC 1 cut(s) 744
BbvI GCAGC 4 cut(s) 53, 496, 922, 1154
BccI CCATC 3 cut(s) 67, 541, 989
BceAI ACGGC 1 cut(s) 21
BciT130I CCWGG 1 cut(s) 358
BcoDI GTCTC 2 cut(s) 546, 803
BfaI CTAG 1 cut(s) 369
BfmI CTRYAG 1 cut(s) 39
BfuAI ACCTGC 1 cut(s) 910
BisI GCNGC 4 cut(s) 42, 510, 911, 1143
BlsI GCNGC 4 cut(s) 43, 511, 912, 1144
Bme1390I CCNGG 1 cut(s) 358
BmeRI GACNNNNNGTC 1 cut(s) 475
BmgT120I GGNCC 2 cut(s) 208, 209
BmiI GGNNCC 1 cut(s) 210
BmrFI CCNGG 1 cut(s) 358
BmsI GCATC 5 cut(s) 184, 640, 812, 989, 1015
BplI GAGNNNNNCTC 2 cut(s) 924, 956
BpuEI CTTGAG 1 cut(s) 935
Bsa29I ATCGAT 1 cut(s) 1023
BsaJI CCNNGG 3 cut(s) 78, 180, 769
BsaXI ACNNNNNCTCC 2 cut(s) 781, 811
Bsc4I CCNNNNNNNGG 3 cut(s) 186, 681, 826
Bse1I ACTGG 2 cut(s) 449, 795
BseBI CCWGG 1 cut(s) 358
BseCI ATCGAT 1 cut(s) 1023
BseDI CCNNGG 3 cut(s) 78, 180, 769
BseGI GGATG 5 cut(s) 279, 552, 631, 1004, 1107
BseLI CCNNNNNNNGG 3 cut(s) 186, 681, 826
BseMII CTCAG 2 cut(s) 714, 1088
BseNI ACTGG 2 cut(s) 449, 795
BseRI GAGGAG 1 cut(s) 698
BseSI GKGCMC 2 cut(s) 212, 731
BseXI GCAGC 4 cut(s) 53, 496, 922, 1154
BshFI GGCC 2 cut(s) 77, 210
BshVI ATCGAT 1 cut(s) 1023
BsiHKAI GWGCWC 1 cut(s) 744
BslFI GGGAC 1 cut(s) 788
BslI CCNNNNNNNGG 3 cut(s) 186, 681, 826
BsmAI GTCTC 2 cut(s) 546, 803
BsmFI GGGAC 1 cut(s) 788
BsnI GGCC 2 cut(s) 77, 210
Bsp120I GGGCCC 1 cut(s) 208
Bsp1286I GDGCHC 3 cut(s) 212, 731, 744
Bsp143I GATC 1 cut(s) 487
Bsp19I CCATGG 1 cut(s) 78
BspACI CCGC 5 cut(s) 29, 98, 163, 787, 1108
BspANI GGCC 2 cut(s) 77, 210
BspCNI CTCAG 2 cut(s) 715, 1089
BspDI ATCGAT 1 cut(s) 1023
BspHI TCATGA 1 cut(s) 253
BspLI GGNNCC 1 cut(s) 210
BspMAI CTGCAG 1 cut(s) 43
BspMI ACCTGC 1 cut(s) 910
BspPI GGATC 1 cut(s) 495
BsrI ACTGG 2 cut(s) 449, 795
BssECI CCNNGG 3 cut(s) 78, 180, 769
BssMI GATC 1 cut(s) 487
BssT1I CCWWGG 3 cut(s) 78, 180, 769
Bst2UI CCWGG 1 cut(s) 358
BstC8I GCNNGC 1 cut(s) 502
BstDEI CTNAG 3 cut(s) 627, 723, 1097
BstDSI CCRYGG 1 cut(s) 78
BstENI CCTNNNNNAGG 1 cut(s) 679
BstF5I GGATG 5 cut(s) 279, 552, 631, 1004, 1107
BstKTI GATC 1 cut(s) 490
BstMAI GTCTC 2 cut(s) 546, 803
BstMBI GATC 1 cut(s) 487
BstMWI GCNNNNNNNGC 3 cut(s) 106, 506, 916
BstNI CCWGG 1 cut(s) 358
BstNSI RCATGY 3 cut(s) 201, 475, 968
BstSCI CCNGG 1 cut(s) 356
BstSFI CTRYAG 1 cut(s) 39
BstSLI GKGCMC 2 cut(s) 212, 731
BstV1I GCAGC 4 cut(s) 53, 496, 922, 1154
BstX2I RGATCY 1 cut(s) 487
BstYI RGATCY 1 cut(s) 487
Bsu15I ATCGAT 1 cut(s) 1023
BsuRI GGCC 2 cut(s) 77, 210
BsuTUI ATCGAT 1 cut(s) 1023
BtgI CCRYGG 1 cut(s) 78
BtsCI GGATG 5 cut(s) 279, 552, 631, 1004, 1107
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 36
BveI ACCTGC 1 cut(s) 910
Cac8I GCNNGC 1 cut(s) 502
CciI TCATGA 1 cut(s) 253
Cfr13I GGNCC 2 cut(s) 208, 209
ClaI ATCGAT 1 cut(s) 1023
CsiI ACCWGGT 1 cut(s) 356
Csp6I GTAC 1 cut(s) 361
CviQI GTAC 1 cut(s) 361
DdeI CTNAG 3 cut(s) 627, 723, 1097
DpnI GATC 1 cut(s) 489
DpnII GATC 1 cut(s) 487
DriI GACNNNNNGTC 1 cut(s) 475
EaeI YGGCCR 1 cut(s) 75
Eam1105I GACNNNNNGTC 1 cut(s) 475
Eco130I CCWWGG 3 cut(s) 78, 180, 769
Eco24I GRGCYC 1 cut(s) 212
EcoNI CCTNNNNNAGG 1 cut(s) 679
EcoO109I RGGNCCY 1 cut(s) 209
EcoRII CCWGG 1 cut(s) 356
EcoT14I CCWWGG 3 cut(s) 78, 180, 769
EcoT22I ATGCAT 1 cut(s) 199
EcoT38I GRGCYC 1 cut(s) 212
ErhI CCWWGG 3 cut(s) 78, 180, 769
FaqI GGGAC 1 cut(s) 788
FauI CCCGC 1 cut(s) 1115
Fnu4HI GCNGC 4 cut(s) 42, 510, 911, 1143
FokI GGATG 5 cut(s) 266, 559, 618, 1011, 1114
FriOI GRGCYC 1 cut(s) 212
Fsp4HI GCNGC 4 cut(s) 42, 510, 911, 1143
FspBI CTAG 1 cut(s) 369
GluI GCNGC 4 cut(s) 42, 510, 911, 1143
HaeIII GGCC 2 cut(s) 77, 210
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HinfI GANTC 3 cut(s) 129, 559, 843
HphI GGTGA 3 cut(s) 116, 248, 934
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 4 cut(s) 546, 724, 901, 1098
Hpy188III TCNNGA 5 cut(s) 50, 254, 274, 369, 679
Hpy8I GTNNAC 1 cut(s) 88
Hpy99I CGWCG 2 cut(s) 230, 275
HpyAV CCTTC 4 cut(s) 152, 260, 418, 685
HpyCH4V TGCA 6 cut(s) 41, 197, 512, 572, 688, 1071
HpyF10VI GCNNNNNNNGC 3 cut(s) 106, 506, 916
HpyF3I CTNAG 3 cut(s) 627, 723, 1097
Kzo9I GATC 1 cut(s) 487
LmnI GCTCC 3 cut(s) 351, 1033, 1093
Lsp1109I GCAGC 4 cut(s) 53, 496, 922, 1154
LweI GCATC 5 cut(s) 184, 640, 812, 989, 1015
MabI ACCWGGT 1 cut(s) 356
MaeI CTAG 1 cut(s) 369
MaeIII GTNAC 4 cut(s) 385, 580, 747, 1058
MalI GATC 1 cut(s) 489
MboI GATC 1 cut(s) 487
MboII GAAGA 2 cut(s) 34, 625
MflI RGATCY 1 cut(s) 487
MhlI GDGCHC 3 cut(s) 212, 731, 744
MlsI TGGCCA 1 cut(s) 77
MluNI TGGCCA 1 cut(s) 77
MlyI GAGTC 2 cut(s) 568, 852
MmeI TCCRAC 1 cut(s) 160
Mox20I TGGCCA 1 cut(s) 77
Mph1103I ATGCAT 1 cut(s) 199
MscI TGGCCA 1 cut(s) 77
MseI TTAA 3 cut(s) 716, 864, 987
MslI CAYNNNNRTG 1 cut(s) 782
Msp20I TGGCCA 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 358
MvaI CCWGG 1 cut(s) 358
MwoI GCNNNNNNNGC 3 cut(s) 106, 506, 916
NcoI CCATGG 1 cut(s) 78
NdeII GATC 1 cut(s) 487
NlaIV GGNNCC 1 cut(s) 210
NmuCI GTSAC 1 cut(s) 747
NsiI ATGCAT 1 cut(s) 199
NspI RCATGY 3 cut(s) 201, 475, 968
PagI TCATGA 1 cut(s) 253
PaqCI CACCTGC 1 cut(s) 910
PciI ACATGT 1 cut(s) 471
PfeI GAWTC 1 cut(s) 129
PflMI CCANNNNNTGG 1 cut(s) 186
PkrI GCNGC 4 cut(s) 43, 511, 912, 1144
PleI GAGTC 2 cut(s) 567, 851
PpsI GAGTC 2 cut(s) 567, 851
PscI ACATGT 1 cut(s) 471
Psp6I CCWGG 1 cut(s) 356
PspGI CCWGG 1 cut(s) 356
PspN4I GGNNCC 1 cut(s) 210
PspOMI GGGCCC 1 cut(s) 208
PspPI GGNCC 2 cut(s) 208, 209
PstI CTGCAG 1 cut(s) 43
PsuI RGATCY 1 cut(s) 487
RsaI GTAC 1 cut(s) 362
RsaNI GTAC 1 cut(s) 361
RseI CAYNNNNRTG 1 cut(s) 782
SaqAI TTAA 3 cut(s) 716, 864, 987
SatI GCNGC 4 cut(s) 42, 510, 911, 1143
Sau3AI GATC 1 cut(s) 487
Sau96I GGNCC 2 cut(s) 208, 209
SchI GAGTC 2 cut(s) 568, 852
ScrFI CCNGG 1 cut(s) 358
SduI GDGCHC 3 cut(s) 212, 731, 744
SexAI ACCWGGT 1 cut(s) 356
SfaNI GCATC 5 cut(s) 184, 640, 812, 989, 1015
SfcI CTRYAG 1 cut(s) 39
SmiMI CAYNNNNRTG 1 cut(s) 782
SmlI CTYRAG 1 cut(s) 914
SmoI CTYRAG 1 cut(s) 914
SsiI CCGC 5 cut(s) 29, 98, 163, 787, 1108
SspMI CTAG 1 cut(s) 369
StyD4I CCNGG 1 cut(s) 356
StyI CCWWGG 3 cut(s) 78, 180, 769
TaqI TCGA 7 cut(s) 225, 273, 495, 841, 1023, 1038, 1122
TaqII GACCGA 1 cut(s) 834
TfiI GAWTC 1 cut(s) 129
Tru1I TTAA 3 cut(s) 716, 864, 987
Tru9I TTAA 3 cut(s) 716, 864, 987
TscAI CASTG 1 cut(s) 43
TseFI GTSAC 1 cut(s) 747
TseI GCWGC 4 cut(s) 41, 509, 910, 1142
Tsp45I GTSAC 1 cut(s) 747
TspRI CASTG 1 cut(s) 43
Van91I CCANNNNNTGG 1 cut(s) 186
XagI CCTNNNNNAGG 1 cut(s) 679
XapI RAATTY 5 cut(s) 328, 338, 592, 902, 1040
XbaI TCTAGA 1 cut(s) 368
XceI RCATGY 3 cut(s) 201, 475, 968
XspI CTAG 1 cut(s) 369
Zsp2I ATGCAT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.