Rroxscaffold_2G00146070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000428
Physical Location & Seq
Forward (+)
83922984 .. 83924255
1272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00146070.1

Sequence Viewer

Length: 321 bp
ATGGTGGCTAGCCGAGCTACAGAGAAGGGAGAGAACCGGGGGAGAAGAGAGAGAATCGCGCGGGAAGAGAGAGAGAAAAGAGAAAAAAAGAAAACTTACCGGCCACGCTATCACAGTTCCAGAAAATTTCAGGCAGACATTCTACCACCCTTACCGAATGTCAAGTATCTCAGAGTCTTGATTGTACGTCTTCGTTGTCCCCAAACAGTGGCCAGAGTTTCCGCCTTGACTGACTCTCTGAGTTGGATGGCACCATATGCATTATTTACATTAACTTTCTGGGACTATGGTGAGGCTGAATCTTCAGAGGAAGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

12.53

Weight (kDa)

9.71

Isoelectric Point (pI)

58.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 250
AccB7I CCANNNNNTGG 1 cut(s) 208
AccII CGCG 2 cut(s) 59, 61
AciI CCGC 2 cut(s) 61, 222
AcoI YGGCCR 2 cut(s) 101, 210
AcsI RAATTY 1 cut(s) 125
AcuI CTGAAG 1 cut(s) 288
AfaI GTAC 1 cut(s) 186
AfiI CCNNNNNNNGG 1 cut(s) 208
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
AoxI GGCC 2 cut(s) 101, 210
ApoI RAATTY 1 cut(s) 125
AspLEI GCGC 1 cut(s) 61
AsuC2I CCSGG 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 302
AsuNHI GCTAGC 1 cut(s) 8
BalI TGGCCA 1 cut(s) 212
BanI GGYRCC 1 cut(s) 250
BbsI GAAGAC 1 cut(s) 182
BccI CCATC 1 cut(s) 241
BcnI CCSGG 1 cut(s) 38
BfaI CTAG 1 cut(s) 9
BfmI CTRYAG 1 cut(s) 18
Bme1390I CCNGG 1 cut(s) 38
BmiI GGNNCC 1 cut(s) 252
BmrFI CCNGG 1 cut(s) 38
BmtI GCTAGC 1 cut(s) 12
BpiI GAAGAC 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 37
Bsc4I CCNNNNNNNGG 1 cut(s) 208
Bse118I RCCGGY 1 cut(s) 99
BseDI CCNNGG 1 cut(s) 37
BseGI GGATG 1 cut(s) 252
BseLI CCNNNNNNNGG 1 cut(s) 208
BseMII CTCAG 2 cut(s) 184, 230
Bsh1236I CGCG 2 cut(s) 59, 61
BshFI GGCC 2 cut(s) 103, 212
BshNI GGYRCC 1 cut(s) 250
BsiSI CCGG 2 cut(s) 37, 100
BslFI GGGAC 2 cut(s) 183, 296
BslI CCNNNNNNNGG 1 cut(s) 208
BsmFI GGGAC 2 cut(s) 183, 296
BsnI GGCC 2 cut(s) 103, 212
BspACI CCGC 2 cut(s) 61, 222
BspANI GGCC 2 cut(s) 103, 212
BspCNI CTCAG 2 cut(s) 183, 231
BspFNI CGCG 2 cut(s) 59, 61
BspLI GGNNCC 1 cut(s) 252
BspOI GCTAGC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 250
BsrFI RCCGGY 1 cut(s) 99
BssAI RCCGGY 1 cut(s) 99
BssECI CCNNGG 1 cut(s) 37
Bst4CI ACNGT 2 cut(s) 116, 208
Bst6I CTCTTC 2 cut(s) 40, 60
BstAPI GCANNNNNTGC 1 cut(s) 257
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 2 cut(s) 170, 239
BstF5I GGATG 1 cut(s) 252
BstFNI CGCG 2 cut(s) 59, 61
BstHHI GCGC 1 cut(s) 61
BstMWI GCNNNNNNNGC 2 cut(s) 14, 257
BstSCI CCNGG 1 cut(s) 36
BstSFI CTRYAG 1 cut(s) 18
BstUI CGCG 2 cut(s) 59, 61
BstV2I GAAGAC 1 cut(s) 182
BsuRI GGCC 2 cut(s) 103, 212
BtsCI GGATG 1 cut(s) 252
BtsIMutI CAGTG 1 cut(s) 213
Cac8I GCNNGC 1 cut(s) 10
CfoI GCGC 1 cut(s) 61
Cfr10I RCCGGY 1 cut(s) 99
Csp6I GTAC 1 cut(s) 185
CviJI RGCY 6 cut(s) 8, 12, 17, 103, 212, 296
CviKI_1 RGCY 6 cut(s) 8, 12, 17, 103, 212, 296
CviQI GTAC 1 cut(s) 185
DdeI CTNAG 2 cut(s) 170, 239
EaeI YGGCCR 2 cut(s) 101, 210
Eam1104I CTCTTC 2 cut(s) 40, 60
EarI CTCTTC 2 cut(s) 40, 60
EciI GGCGGA 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 288
EcoT22I ATGCAT 1 cut(s) 262
FaiI YATR 3 cut(s) 256, 258, 288
FaqI GGGAC 2 cut(s) 183, 296
FauI CCCGC 1 cut(s) 54
FauNDI CATATG 1 cut(s) 256
FokI GGATG 1 cut(s) 259
FspBI CTAG 1 cut(s) 9
GlaI GCGC 1 cut(s) 60
HaeIII GGCC 2 cut(s) 103, 212
HapII CCGG 2 cut(s) 37, 100
HhaI GCGC 1 cut(s) 61
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HinfI GANTC 4 cut(s) 54, 174, 233, 299
HpaII CCGG 2 cut(s) 37, 100
HphI GGTGA 1 cut(s) 302
Hpy188I TCNGA 3 cut(s) 173, 240, 307
Hpy188III TCNNGA 2 cut(s) 120, 178
HpyAV CCTTC 1 cut(s) 19
HpyCH4III ACNGT 2 cut(s) 116, 208
HpyCH4IV ACGT 1 cut(s) 187
HpyCH4V TGCA 1 cut(s) 260
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 257
HpyF3I CTNAG 2 cut(s) 170, 239
HpySE526I ACGT 1 cut(s) 187
HspAI GCGC 1 cut(s) 59
LpnPI CCDG 6 cut(s) 50, 113, 116, 133, 226, 265
MaeI CTAG 1 cut(s) 9
MaeII ACGT 1 cut(s) 187
MboII GAAGA 4 cut(s) 57, 77, 182, 294
MlsI TGGCCA 1 cut(s) 212
MluCI AATT 1 cut(s) 125
MluNI TGGCCA 1 cut(s) 212
MlyI GAGTC 2 cut(s) 183, 227
MmeI TCCRAC 1 cut(s) 224
MnlI CCTC 2 cut(s) 286, 301
Mox20I TGGCCA 1 cut(s) 212
Mph1103I ATGCAT 1 cut(s) 262
MscI TGGCCA 1 cut(s) 212
MseI TTAA 1 cut(s) 272
Msp20I TGGCCA 1 cut(s) 212
MspI CCGG 2 cut(s) 37, 100
MspR9I CCNGG 1 cut(s) 38
MvnI CGCG 2 cut(s) 59, 61
MwoI GCNNNNNNNGC 2 cut(s) 14, 257
NciI CCSGG 1 cut(s) 38
NdeI CATATG 1 cut(s) 256
NheI GCTAGC 1 cut(s) 8
NlaIV GGNNCC 1 cut(s) 252
NmeAIII GCCGAG 1 cut(s) 38
NsiI ATGCAT 1 cut(s) 262
PfeI GAWTC 2 cut(s) 54, 299
PflMI CCANNNNNTGG 1 cut(s) 208
PleI GAGTC 2 cut(s) 182, 227
PpsI GAGTC 2 cut(s) 182, 227
PspN4I GGNNCC 1 cut(s) 252
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
SaqAI TTAA 1 cut(s) 272
SchI GAGTC 2 cut(s) 183, 227
ScrFI CCNGG 1 cut(s) 38
SetI ASST 2 cut(s) 19, 190
SfcI CTRYAG 1 cut(s) 18
Sse9I AATT 1 cut(s) 125
SsiI CCGC 2 cut(s) 61, 222
SspMI CTAG 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 36
TaaI ACNGT 2 cut(s) 116, 208
TaiI ACGT 1 cut(s) 190
TasI AATT 1 cut(s) 125
TfiI GAWTC 2 cut(s) 54, 299
Tru1I TTAA 1 cut(s) 272
Tru9I TTAA 1 cut(s) 272
TscAI CASTG 1 cut(s) 213
TspRI CASTG 1 cut(s) 213
Van91I CCANNNNNTGG 1 cut(s) 208
XapI RAATTY 1 cut(s) 125
XspI CTAG 1 cut(s) 9
Zsp2I ATGCAT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.