Prupe.8G124500_v2.0.a1

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000428
Physical Location & Seq
Reverse (-)
14991705 .. 14992811
1107 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G124500.1

Sequence Viewer

Length: 1107 bp
ATGGCTACCAAAAGCAAAGCAGGCAGAAAAATCCCAAATCACCCAAAAACAAACAAGATTAATCTGAAAGGAAAGCAAAACTCCAAGACCGCCGCCACAATACCTCACTTACCTGTCCTTGTTATCCTCCACTTCCTCCAATTCCTTCCCATCAAACTTGCGATCCGCATAAGCTCTCTTTGCAAGCAACGGGCAGGGCTGTGGTCTTCAATCCCAGTATTAGATTTCGACGAGGACGAGCCACCACATGGCGACGAAAACCTTGACATAATACAACTCCAACATACGAACTTCATCAATTTCTTGGACAGGTGTTTGGAGTTCCACCAGAAATGCGAGGGCTTGGACAAATTCTGGCTTCGTATGACGTTGAGTTCAGTCAAAGACAAAGACAAGGTTGGAGAGTGGTTGTGTTTTGCAGTTGGAAGAAGAGTCAAAGAATTAGATATCAGCCTCAAATATAAATATGAGGTCAATCAATATTGCTTTTCCTCTACCTTTCTCAATGCAAAGCCATTAGTTATTTTGAATTTGGAGAATGTGACAATAGCGAACAGCGGTCAGCCTATAAGCCTGCCCTCATTACAAACTCTGTCCATCAGAAGAGTGAGACTCACAGCCTTGTCTCTCTCCGCATTAATTTCAGGCTGCCCTTGCATTCAGTATTTGTCGTTAACTTCATCTTCTTGCTTTGAATCCTATGACTTATCCATGCAGACCCTTCTTGGTGGAAAGTCTTTAACTTCCTTTAATCTAAAGTACGTGAGAGTAAGGGACGACAATAATAATGATCCTAAAGCTCCTATAGGCCTTCCCTATTTGAAAACAATGTCCCTCGAAATTGTGGACCTGTATTACCCCCAATTAATTTCAGGGAGCCCTTCCCTTGAGCATTTGTCAGTATCTTTTTGTTTCGCTAAATTTTATAGATCACCTAAGATTCCACGTTCTTCCAGTCTCAAATCCTTGGAAGTCAGAGATTTCGATTCTAAGGTAGTTCAAGTGAGTAGAGGATCCACCATGGGGTCAATGTGGTCAGACGACCCCATGGCGGCCCTGGAAATGGCTTGGAGGTCCTTGGTTTCTCTTGGCAGCCATGGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box LRR_2

Protein Analysis

369

Amino Acids

41.38

Weight (kDa)

9.23

Isoelectric Point (pI)

34.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 248
AciI CCGC 6 cut(s) 90, 93, 166, 558, 633, 1052
AclWI GGATC 4 cut(s) 157, 785, 1008, 1021
AcsI RAATTY 3 cut(s) 350, 529, 920
AfaI GTAC 1 cut(s) 761
AfiI CCNNNNNNNGG 4 cut(s) 248, 1023, 1051, 1063
AgsI TTSAA 5 cut(s) 210, 529, 695, 823, 1001
AjnI CCWGG 1 cut(s) 1056
AluBI AGCT 2 cut(s) 174, 800
AluI AGCT 2 cut(s) 174, 800
Alw26I GTCTC 3 cut(s) 604, 630, 962
AlwI GGATC 4 cut(s) 157, 785, 1008, 1021
AoxI GGCC 2 cut(s) 808, 1053
ApeKI GCWGC 2 cut(s) 648, 1092
ApoI RAATTY 3 cut(s) 350, 529, 920
AseI ATTAAT 3 cut(s) 60, 638, 866
AspS9I GGNCC 3 cut(s) 847, 1054, 1074
AsuHPI GGTGA 2 cut(s) 32, 924
AvaII GGWCC 2 cut(s) 847, 1074
BamHI GGATCC 1 cut(s) 1013
BanII GRGCYC 1 cut(s) 881
BbsI GAAGAC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 635
BccI CCATC 2 cut(s) 158, 605
BciT130I CCWGG 1 cut(s) 1058
BcoDI GTCTC 3 cut(s) 604, 630, 962
BfmI CTRYAG 1 cut(s) 804
BisI GCNGC 4 cut(s) 93, 649, 1053, 1093
BlsI GCNGC 4 cut(s) 94, 650, 1054, 1094
Bme1390I CCNGG 1 cut(s) 1058
Bme18I GGWCC 2 cut(s) 847, 1074
BmgT120I GGNCC 3 cut(s) 847, 1054, 1074
BmiI GGNNCC 2 cut(s) 878, 1015
BmrFI CCNGG 1 cut(s) 1058
BmrI ACTGGG 1 cut(s) 209
BmuI ACTGGG 1 cut(s) 209
BpiI GAAGAC 1 cut(s) 198
BplI GAGNNNNNCTC 2 cut(s) 597, 629
BpuEI CTTGAG 1 cut(s) 908
BsaAI YACGTR 1 cut(s) 763
BsaJI CCNNGG 6 cut(s) 966, 1020, 1047, 1056, 1077, 1096
Bsc4I CCNNNNNNNGG 4 cut(s) 248, 1023, 1051, 1063
Bse1I ACTGG 2 cut(s) 215, 954
BseBI CCWGG 1 cut(s) 1058
BseDI CCNNGG 6 cut(s) 966, 1020, 1047, 1056, 1077, 1096
BseLI CCNNNNNNNGG 4 cut(s) 248, 1023, 1051, 1063
BseNI ACTGG 2 cut(s) 215, 954
BseXI GCAGC 1 cut(s) 635
BshFI GGCC 2 cut(s) 810, 1055
BslFI GGGAC 2 cut(s) 788, 817
BslI CCNNNNNNNGG 4 cut(s) 248, 1023, 1051, 1063
BsmAI GTCTC 3 cut(s) 604, 630, 962
BsmFI GGGAC 2 cut(s) 788, 817
BsmI GAATGC 1 cut(s) 657
BsnI GGCC 2 cut(s) 810, 1055
Bsp1286I GDGCHC 1 cut(s) 881
Bsp143I GATC 4 cut(s) 162, 790, 929, 1013
Bsp19I CCATGG 3 cut(s) 1020, 1047, 1096
BspACI CCGC 6 cut(s) 90, 93, 166, 558, 633, 1052
BspANI GGCC 2 cut(s) 810, 1055
BspLI GGNNCC 2 cut(s) 878, 1015
BspPI GGATC 4 cut(s) 157, 785, 1008, 1021
BsrI ACTGG 2 cut(s) 215, 954
BssECI CCNNGG 6 cut(s) 966, 1020, 1047, 1056, 1077, 1096
BssMI GATC 4 cut(s) 162, 790, 929, 1013
BssT1I CCWWGG 5 cut(s) 966, 1020, 1047, 1077, 1096
Bst2UI CCWGG 1 cut(s) 1058
Bst6I CTCTTC 2 cut(s) 424, 598
BstBAI YACGTR 1 cut(s) 763
BstC8I GCNNGC 3 cut(s) 22, 185, 575
BstDEI CTNAG 2 cut(s) 936, 990
BstDSI CCRYGG 3 cut(s) 1020, 1047, 1096
BstKTI GATC 4 cut(s) 165, 793, 932, 1016
BstMAI GTCTC 3 cut(s) 604, 630, 962
BstMBI GATC 4 cut(s) 162, 790, 929, 1013
BstMWI GCNNNNNNNGC 3 cut(s) 21, 180, 654
BstNI CCWGG 1 cut(s) 1058
BstSCI CCNGG 1 cut(s) 1056
BstSFI CTRYAG 1 cut(s) 804
BstV1I GCAGC 1 cut(s) 635
BstV2I GAAGAC 1 cut(s) 198
BstX2I RGATCY 1 cut(s) 1013
BstYI RGATCY 1 cut(s) 1013
BsuRI GGCC 2 cut(s) 810, 1055
BtgI CCRYGG 3 cut(s) 1020, 1047, 1096
Cac8I GCNNGC 3 cut(s) 22, 185, 575
Cfr13I GGNCC 3 cut(s) 847, 1054, 1074
Csp6I GTAC 1 cut(s) 760
CviAII CATG 5 cut(s) 248, 712, 1021, 1048, 1097
CviQI GTAC 1 cut(s) 760
DdeI CTNAG 2 cut(s) 936, 990
DpnI GATC 4 cut(s) 164, 792, 931, 1015
DpnII GATC 4 cut(s) 162, 790, 929, 1013
Eam1104I CTCTTC 2 cut(s) 424, 598
EarI CTCTTC 2 cut(s) 424, 598
Eco130I CCWWGG 5 cut(s) 966, 1020, 1047, 1077, 1096
Eco147I AGGCCT 1 cut(s) 810
Eco24I GRGCYC 1 cut(s) 881
Eco32I GATATC 1 cut(s) 448
Eco47I GGWCC 2 cut(s) 847, 1074
EcoO109I RGGNCCY 1 cut(s) 1074
EcoRII CCWGG 1 cut(s) 1056
EcoRV GATATC 1 cut(s) 448
EcoT14I CCWWGG 5 cut(s) 966, 1020, 1047, 1077, 1096
EcoT38I GRGCYC 1 cut(s) 881
ErhI CCWWGG 5 cut(s) 966, 1020, 1047, 1077, 1096
FaeI CATG 5 cut(s) 251, 715, 1024, 1051, 1100
FaqI GGGAC 2 cut(s) 788, 817
FatI CATG 5 cut(s) 247, 711, 1020, 1047, 1096
Fnu4HI GCNGC 4 cut(s) 93, 649, 1053, 1093
FriOI GRGCYC 1 cut(s) 881
Fsp4HI GCNGC 4 cut(s) 93, 649, 1053, 1093
GluI GCNGC 4 cut(s) 93, 649, 1053, 1093
HaeIII GGCC 2 cut(s) 810, 1055
Hin1II CATG 5 cut(s) 251, 715, 1024, 1051, 1100
HincII GTYRAC 1 cut(s) 675
HindII GTYRAC 1 cut(s) 675
HinfI GANTC 5 cut(s) 432, 612, 695, 940, 986
HpaI GTTAAC 1 cut(s) 675
HphI GGTGA 2 cut(s) 32, 924
Hpy166II GTNNAC 2 cut(s) 675, 847
Hpy188I TCNGA 4 cut(s) 66, 602, 977, 1039
Hpy8I GTNNAC 2 cut(s) 675, 847
Hpy99I CGWCG 2 cut(s) 233, 257
HpyAV CCTTC 4 cut(s) 155, 731, 821, 891
HpyCH4IV ACGT 3 cut(s) 368, 762, 946
HpyCH4V TGCA 5 cut(s) 183, 419, 509, 657, 715
HpyF10VI GCNNNNNNNGC 3 cut(s) 21, 180, 654
HpyF3I CTNAG 2 cut(s) 936, 990
HpySE526I ACGT 3 cut(s) 368, 762, 946
Hsp92II CATG 5 cut(s) 251, 715, 1024, 1051, 1100
KspAI GTTAAC 1 cut(s) 675
Kzo9I GATC 4 cut(s) 162, 790, 929, 1013
LmnI GCTCC 2 cut(s) 805, 876
Lsp1109I GCAGC 1 cut(s) 635
MaeII ACGT 3 cut(s) 368, 762, 946
MaeIII GTNAC 1 cut(s) 541
MalI GATC 4 cut(s) 164, 792, 931, 1015
MboI GATC 4 cut(s) 162, 790, 929, 1013
MboII GAAGA 6 cut(s) 198, 438, 441, 615, 675, 942
MflI RGATCY 1 cut(s) 1013
MhlI GDGCHC 1 cut(s) 881
MlyI GAGTC 2 cut(s) 441, 606
MmeI TCCRAC 3 cut(s) 304, 379, 403
MseI TTAA 6 cut(s) 60, 638, 674, 740, 750, 866
MspA1I CMGCKG 1 cut(s) 558
MspR9I CCNGG 1 cut(s) 1058
Mva1269I GAATGC 1 cut(s) 657
MvaI CCWGG 1 cut(s) 1058
MwoI GCNNNNNNNGC 3 cut(s) 21, 180, 654
NcoI CCATGG 3 cut(s) 1020, 1047, 1096
NdeII GATC 4 cut(s) 162, 790, 929, 1013
NlaIII CATG 5 cut(s) 251, 715, 1024, 1051, 1100
NlaIV GGNNCC 2 cut(s) 878, 1015
NmuCI GTSAC 1 cut(s) 541
PceI AGGCCT 1 cut(s) 810
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PctI GAATGC 1 cut(s) 657
PfeI GAWTC 3 cut(s) 695, 940, 986
PflMI CCANNNNNTGG 1 cut(s) 248
PkrI GCNGC 4 cut(s) 94, 650, 1054, 1094
PleI GAGTC 2 cut(s) 440, 606
PpsI GAGTC 2 cut(s) 440, 606
Ppu21I YACGTR 1 cut(s) 763
PpuMI RGGWCCY 1 cut(s) 1074
PshBI ATTAAT 3 cut(s) 60, 638, 866
Psp5II RGGWCCY 1 cut(s) 1074
Psp6I CCWGG 1 cut(s) 1056
PspGI CCWGG 1 cut(s) 1056
PspN4I GGNNCC 2 cut(s) 878, 1015
PspPI GGNCC 3 cut(s) 847, 1054, 1074
PspPPI RGGWCCY 1 cut(s) 1074
PsuI RGATCY 1 cut(s) 1013
RsaI GTAC 1 cut(s) 761
RsaNI GTAC 1 cut(s) 760
SaqAI TTAA 6 cut(s) 60, 638, 674, 740, 750, 866
SatI GCNGC 4 cut(s) 93, 649, 1053, 1093
Sau3AI GATC 4 cut(s) 162, 790, 929, 1013
Sau96I GGNCC 3 cut(s) 847, 1054, 1074
SchI GAGTC 2 cut(s) 441, 606
ScrFI CCNGG 1 cut(s) 1058
SduI GDGCHC 1 cut(s) 881
SfcI CTRYAG 1 cut(s) 804
SinI GGWCC 2 cut(s) 847, 1074
SmlI CTYRAG 1 cut(s) 887
SmoI CTYRAG 1 cut(s) 887
SseBI AGGCCT 1 cut(s) 810
SsiI CCGC 6 cut(s) 90, 93, 166, 558, 633, 1052
SspI AATATT 1 cut(s) 482
StuI AGGCCT 1 cut(s) 810
StyD4I CCNGG 1 cut(s) 1056
StyI CCWWGG 5 cut(s) 966, 1020, 1047, 1077, 1096
TaiI ACGT 3 cut(s) 371, 765, 949
TaqI TCGA 3 cut(s) 228, 837, 984
TauI GCSGC 2 cut(s) 95, 1055
TfiI GAWTC 3 cut(s) 695, 940, 986
Tru1I TTAA 6 cut(s) 60, 638, 674, 740, 750, 866
Tru9I TTAA 6 cut(s) 60, 638, 674, 740, 750, 866
TseFI GTSAC 1 cut(s) 541
TseI GCWGC 2 cut(s) 648, 1092
Tsp45I GTSAC 1 cut(s) 541
TspDTI ATGAA 2 cut(s) 283, 669
Van91I CCANNNNNTGG 1 cut(s) 248
VpaK11BI GGWCC 2 cut(s) 847, 1074
VspI ATTAAT 3 cut(s) 60, 638, 866
XapI RAATTY 3 cut(s) 350, 529, 920
XcmI CCANNNNNNNNNTGG 1 cut(s) 1054
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.