Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000428

Physical Location & Seq

Genomic Coordinates Reverse (-)

84262459 .. 84262929

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG609700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGAATGAGGATGTGGCGTTTCTGTTTAGAAGTTCGAGCCTGAAGTCCTTAGAAGTCCGTTGCACTAGTAACCGTATCAAAGTTACAGCTATTAGTCTCGAATCTTTTACATTCGTTTCTGAAAAAGAAATAAAAGCAATCTTCTTGGATGGTTGCCCCAACTTGAAACATATCAACATCCATGCTCCGCGACTGGATTGGTTTGGATTGTCTGGATGCCATGATAGCGTTAAGGCCACAATCAATACTCCAAATATTCATACATTTTCTTATGATGGTTATTTGAAATATAAAGTTTTTTTGGAAGCTCCAGGAATAAGGAAGGCTTTGATCGAACTTCAGGACAGGAAACCCACCTCAGAACACGAGTCGTGGAAACACTTTTCTACTCTCAGAGATTTTCTTAGTAGAAATTTTGATTCTCAATGCACAGAAATGTTCCTATTTGTTCATGATCAGGAGGTGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TAF TAF6_C

Protein Analysis

156

Amino Acids

18.01

Weight (kDa)

6.65

Isoelectric Point (pI)

50.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000428)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica	MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica	Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis	pycom17g10120
rosa_chinensis	RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora	Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii	Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa	Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha	Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana	Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	190
AciI	CCGC	1 cut(s)	188
AcsI	RAATTY	1 cut(s)	412
AcuI	CTGAAG	2 cut(s)	62, 323
AgsI	TTSAA	2 cut(s)	166, 286
AhlI	ACTAGT	1 cut(s)	65
AjnI	CCWGG	1 cut(s)	310
AluBI	AGCT	2 cut(s)	89, 308
AluI	AGCT	2 cut(s)	89, 308
Alw26I	GTCTC	1 cut(s)	101
AoxI	GGCC	1 cut(s)	234
ApoI	RAATTY	1 cut(s)	412
BauI	CACGAG	1 cut(s)	365
BccI	CCATC	2 cut(s)	143, 269
BciT130I	CCWGG	1 cut(s)	312
BclI	TGATCA	1 cut(s)	454
BcoDI	GTCTC	1 cut(s)	101
BcuI	ACTAGT	1 cut(s)	65
BfaI	CTAG	1 cut(s)	66
Bme1390I	CCNGG	1 cut(s)	312
BmrFI	CCNGG	1 cut(s)	312
BmsI	GCATC	1 cut(s)	206
BpmI	CTGGAG	1 cut(s)	294
Bse1I	ACTGG	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	312
BseGI	GGATG	4 cut(s)	16, 154, 177, 221
BseMII	CTCAG	2 cut(s)	372, 406
BseNI	ACTGG	1 cut(s)	198
Bsh1236I	CGCG	1 cut(s)	190
BshFI	GGCC	1 cut(s)	236
BsmAI	GTCTC	1 cut(s)	101
BsnI	GGCC	1 cut(s)	236
Bsp143I	GATC	2 cut(s)	330, 454
BspACI	CCGC	1 cut(s)	188
BspANI	GGCC	1 cut(s)	236
BspCNI	CTCAG	2 cut(s)	371, 405
BspFNI	CGCG	1 cut(s)	190
BspHI	TCATGA	1 cut(s)	451
BsrI	ACTGG	1 cut(s)	198
BssMI	GATC	2 cut(s)	330, 454
BssSI	CACGAG	1 cut(s)	365
Bst2BI	CACGAG	1 cut(s)	365
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	1 cut(s)	74
BstDEI	CTNAG	4 cut(s)	49, 358, 392, 404
BstF5I	GGATG	4 cut(s)	16, 154, 177, 221
BstFNI	CGCG	1 cut(s)	190
BstKTI	GATC	2 cut(s)	333, 457
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	2 cut(s)	330, 454
BstMWI	GCNNNNNNNGC	1 cut(s)	225
BstNI	CCWGG	1 cut(s)	312
BstSCI	CCNGG	1 cut(s)	310
BstUI	CGCG	1 cut(s)	190
BsuRI	GGCC	1 cut(s)	236
BtsCI	GGATG	4 cut(s)	16, 154, 177, 221
CciI	TCATGA	1 cut(s)	451
CviAII	CATG	3 cut(s)	182, 221, 452
CviJI	RGCY	5 cut(s)	39, 89, 236, 308, 326
CviKI_1	RGCY	5 cut(s)	39, 89, 236, 308, 326
DdeI	CTNAG	4 cut(s)	49, 358, 392, 404
DpnI	GATC	2 cut(s)	332, 456
DpnII	GATC	2 cut(s)	330, 454
Eco57I	CTGAAG	2 cut(s)	62, 323
EcoRII	CCWGG	1 cut(s)	310
FaeI	CATG	3 cut(s)	185, 224, 455
FaiI	YATR	7 cut(s)	171, 183, 222, 261, 273, 291, 453
FalI	AAGNNNNNCTT	2 cut(s)	310, 342
FatI	CATG	3 cut(s)	181, 220, 451
FbaI	TGATCA	1 cut(s)	454
FokI	GGATG	4 cut(s)	23, 161, 164, 228
FspBI	CTAG	1 cut(s)	66
GsuI	CTGGAG	1 cut(s)	294
HaeIII	GGCC	1 cut(s)	236
Hin1II	CATG	3 cut(s)	185, 224, 455
HinfI	GANTC	3 cut(s)	101, 368, 419
Hpy188I	TCNGA	3 cut(s)	121, 361, 395
Hpy188III	TCNNGA	5 cut(s)	98, 213, 341, 452, 458
HpyAV	CCTTC	1 cut(s)	316
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4V	TGCA	2 cut(s)	63, 429
HpyF10VI	GCNNNNNNNGC	1 cut(s)	225
HpyF3I	CTNAG	4 cut(s)	49, 358, 392, 404
Hsp92II	CATG	3 cut(s)	185, 224, 455
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	2 cut(s)	330, 454
LmnI	GCTCC	2 cut(s)	190, 313
LpnPI	CCDG	8 cut(s)	53, 179, 198, 297, 324, 326, 331, 443
LweI	GCATC	1 cut(s)	206
MaeI	CTAG	1 cut(s)	66
MaeIII	GTNAC	2 cut(s)	68, 82
MalI	GATC	2 cut(s)	332, 456
MboI	GATC	2 cut(s)	330, 454
MboII	GAAGA	1 cut(s)	133
MluCI	AATT	1 cut(s)	412
MlyI	GAGTC	1 cut(s)	377
MnlI	CCTC	2 cut(s)	367, 454
MseI	TTAA	1 cut(s)	231
MslI	CAYNNNNRTG	1 cut(s)	434
MspR9I	CCNGG	1 cut(s)	312
MvaI	CCWGG	1 cut(s)	312
MvnI	CGCG	1 cut(s)	190
MwoI	GCNNNNNNNGC	1 cut(s)	225
NdeII	GATC	2 cut(s)	330, 454
NlaIII	CATG	3 cut(s)	185, 224, 455
PagI	TCATGA	1 cut(s)	451
PfeI	GAWTC	2 cut(s)	101, 419
PfoI	TCCNGGA	1 cut(s)	310
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
Psp6I	CCWGG	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	310
RseI	CAYNNNNRTG	1 cut(s)	434
SaqAI	TTAA	1 cut(s)	231
Sau3AI	GATC	2 cut(s)	330, 454
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	1 cut(s)	312
SetI	ASST	4 cut(s)	91, 310, 359, 465
SfaNI	GCATC	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	434
SpeI	ACTAGT	1 cut(s)	65
Sse9I	AATT	1 cut(s)	412
SsiI	CCGC	1 cut(s)	188
SspI	AATATT	1 cut(s)	256
SspMI	CTAG	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	310
TaaI	ACNGT	1 cut(s)	74
TaqI	TCGA	3 cut(s)	35, 99, 333
TasI	AATT	1 cut(s)	412
TfiI	GAWTC	2 cut(s)	101, 419
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TspDTI	ATGAA	3 cut(s)	17, 248, 440
TspGWI	ACGGA	1 cut(s)	47
XapI	RAATTY	1 cut(s)	412
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.