RchiOBHm_Chr6g0265441

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000428
Physical Location & Seq
Reverse (-)
21312537 .. 21313793
1257 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23805

Sequence Viewer

Length: 1257 bp
ATGGCTGTTAGCACATCACTGCCTCACTTTCCTGACCTTGTTATGCACCAAATCATCCTGCGACTGCCCACTAAACCTGCCATTCGCATGAGCTCTCTATCTAAACAATGGGAAGGAGTATGGTCTGCACTCCATGTGTTAGATTTCGACGAGGGAGATCTGCCGCATGGTAATGATGACAATGACCACCATACAAAGTTCATCAACATCTTGGTAAGGTATTTGGAATTCCGTAAGAAGGACAAGCAACAACCAGTCTTGGATAAATTCAGGCTTCACATGGCGAGCTACATGTTTGGAGAGGATGATTCTGTAATAGCTAAGTTGTTGAGTAATTCATTTCAGAGAAATGTCAAAGAATTAGATGTCAGCCTTAGGAGTAAACATAAGGAGGTTAACTGGTACTATTGCTTATCCCCTGGGGCACTTGTTAATGCAAAATCCATAACTGCGCTGAATTTGGAGTGTCTGATGATCAAGGACATTGACAGTGCTGAGACTGAGCCCTTGTGTCCCTCTTTGAAAATTCTATCTCTCAAGAATGTGCATTTTAATCCCAAGGCTCTCCTTGACTTGATTTTGGGGTGCCCTTCAGTTAAGTGCTTGTCATTAACTTCATGTTCCTTTGACCCCCCGGTGTTTCAGATTTCAAGTAGCAGTCTCAGATCATTGGAAGTTAAGAATTGCAATGCTCAGAGTCTTCTAGTTGATAGAACTAGGGATCTTGAATCTTTTACATTCGTTTCAAATTTTCTGCTTCTTGAGACTATAATCCTGAAGGATACTGTCAACTTGAAAAAGATCAAAATGCGTGCTCAGCACCTGAAGTATTTTGGATTACTTGGATGCCACAATAATTTGAATGCTACAGTCAGTACTCCAAATCTACACCAGTTTGATATCTTTGCTTATCTGACGTCCAAAGTTTCTATCAATGCTCCAAACTTATGCTTGGCCCGCATCACACTCCGGGAAGAAGAATTTTCTACCTTCAACCAGGAATGGAAACATTTTGCTACCTTCAGTGACTTTCTTAAAGCATTTGGTTGCTCCAACAATATAATCCTCTATATAAGTGATTTCAAGGTATACATCTATCAACATATACTCTGTAGGTTTTCCTCTGTCAGATTTCTGTTTGTGATATGCAACATATGCGTCCATGTGGATTGTGTGGATCTGTATCTATGCATGAGTTCCTGTCAATTGGCCTTTGTTATTTTGCACCACTTGCTGTTTGCCAAGCATTTTATCTGA

Protein Analysis

418

Amino Acids

47.88

Weight (kDa)

8.09

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 108 - 284 4.3e-15 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 920
Acc36I ACCTGC 1 cut(s) 85
AccB1I GGYRCC 1 cut(s) 585
AccI GTMKAC 1 cut(s) 1089
AciI CCGC 2 cut(s) 164, 958
AclWI GGATC 2 cut(s) 729, 1185
AcsI RAATTY 6 cut(s) 227, 266, 457, 525, 748, 980
AcuI CTGAAG 4 cut(s) 576, 797, 845, 1006
AcyI GRCGYC 1 cut(s) 917
AfaI GTAC 2 cut(s) 404, 877
AfiI CCNNNNNNNGG 1 cut(s) 238
AflIII ACRYGT 1 cut(s) 291
AgsI TTSAA 8 cut(s) 523, 651, 728, 747, 796, 862, 994, 1084
AjnI CCWGG 2 cut(s) 418, 996
AluBI AGCT 3 cut(s) 93, 288, 320
AluI AGCT 3 cut(s) 93, 288, 320
Alw21I GWGCWC 2 cut(s) 95, 817
Alw26I GTCTC 3 cut(s) 491, 665, 758
AlwI GGATC 2 cut(s) 729, 1185
AlwNI CAGNNNCTG 1 cut(s) 823
AoxI GGCC 2 cut(s) 954, 1209
ApoI RAATTY 6 cut(s) 227, 266, 457, 525, 748, 980
AspLEI GCGC 1 cut(s) 454
AspS9I GGNCC 1 cut(s) 955
AsuC2I CCSGG 2 cut(s) 635, 971
AxyI CCTNAGG 1 cut(s) 374
BaeGI GKGCMC 2 cut(s) 427, 590
BanI GGYRCC 1 cut(s) 585
BanII GRGCYC 2 cut(s) 95, 507
BbsI GAAGAC 1 cut(s) 692
Bbv12I GWGCWC 2 cut(s) 95, 817
BciT130I CCWGG 2 cut(s) 420, 998
BciVI GTATCC 1 cut(s) 775
BclI TGATCA 1 cut(s) 474
BcnI CCSGG 2 cut(s) 635, 971
BcoDI GTCTC 3 cut(s) 491, 665, 758
BfaI CTAG 2 cut(s) 704, 717
BfmI CTRYAG 2 cut(s) 867, 1111
BfuAI ACCTGC 1 cut(s) 85
BfuI GTATCC 1 cut(s) 775
BglII AGATCT 1 cut(s) 157
BisI GCNGC 1 cut(s) 164
BlpI GCTNAGC 1 cut(s) 816
BlsI GCNGC 1 cut(s) 165
BmcAI AGTACT 1 cut(s) 877
Bme1390I CCNGG 4 cut(s) 420, 635, 971, 998
BmgT120I GGNCC 1 cut(s) 955
BmiI GGNNCC 1 cut(s) 587
BmrFI CCNGG 4 cut(s) 420, 635, 971, 998
BmsI GCATC 2 cut(s) 836, 969
BpiI GAAGAC 1 cut(s) 692
Bpu1102I GCTNAGC 1 cut(s) 816
BpuEI CTTGAG 2 cut(s) 521, 782
BpuMI CCSGG 2 cut(s) 635, 971
BsaBI GATNNNNATC 1 cut(s) 1182
BsaHI GRCGYC 1 cut(s) 917
BsaJI CCNNGG 4 cut(s) 418, 419, 558, 633
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse1I ACTGG 3 cut(s) 254, 404, 892
Bse21I CCTNAGG 1 cut(s) 374
Bse3DI GCAATG 1 cut(s) 694
Bse8I GATNNNNATC 1 cut(s) 1182
BseBI CCWGG 2 cut(s) 420, 998
BseDI CCNNGG 4 cut(s) 418, 419, 558, 633
BseGI GGATG 3 cut(s) 54, 310, 851
BseJI GATNNNNATC 1 cut(s) 1182
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMI GCAATG 1 cut(s) 694
BseMII CTCAG 5 cut(s) 486, 492, 676, 707, 830
BseNI ACTGG 3 cut(s) 254, 404, 892
BseSI GKGCMC 2 cut(s) 427, 590
BsgI GTGCAG 1 cut(s) 111
BshFI GGCC 2 cut(s) 956, 1211
BshNI GGYRCC 1 cut(s) 585
BsiHKAI GWGCWC 2 cut(s) 95, 817
BsiSI CCGG 2 cut(s) 635, 970
BslFI GGGAC 1 cut(s) 498
BslI CCNNNNNNNGG 1 cut(s) 238
BsmAI GTCTC 3 cut(s) 491, 665, 758
BsmFI GGGAC 1 cut(s) 498
BsmI GAATGC 1 cut(s) 868
BsnI GGCC 2 cut(s) 956, 1211
Bsp1286I GDGCHC 5 cut(s) 95, 427, 507, 590, 817
Bsp143I GATC 6 cut(s) 157, 474, 665, 721, 801, 1177
Bsp1720I GCTNAGC 1 cut(s) 816
BspACI CCGC 2 cut(s) 164, 958
BspANI GGCC 2 cut(s) 956, 1211
BspCNI CTCAG 5 cut(s) 487, 493, 675, 706, 829
BspLI GGNNCC 1 cut(s) 587
BspMI ACCTGC 1 cut(s) 85
BspPI GGATC 2 cut(s) 729, 1185
BspT107I GGYRCC 1 cut(s) 585
BsrDI GCAATG 1 cut(s) 694
BsrI ACTGG 3 cut(s) 254, 404, 892
BssECI CCNNGG 4 cut(s) 418, 419, 558, 633
BssMI GATC 6 cut(s) 157, 474, 665, 721, 801, 1177
BssNAI GTATAC 1 cut(s) 1090
BssNI GRCGYC 1 cut(s) 917
BssT1I CCWWGG 1 cut(s) 558
Bst1107I GTATAC 1 cut(s) 1090
Bst2UI CCWGG 2 cut(s) 420, 998
Bst4CI ACNGT 3 cut(s) 491, 787, 871
BstACI GRCGYC 1 cut(s) 917
BstAPI GCANNNNNTGC 2 cut(s) 1155, 1231
BstC8I GCNNGC 3 cut(s) 286, 813, 958
BstDEI CTNAG 7 cut(s) 321, 374, 495, 501, 662, 693, 816
BstF5I GGATG 3 cut(s) 54, 310, 851
BstHHI GCGC 1 cut(s) 454
BstKTI GATC 6 cut(s) 160, 477, 668, 724, 804, 1180
BstMAI GTCTC 3 cut(s) 491, 665, 758
BstMBI GATC 6 cut(s) 157, 474, 665, 721, 801, 1177
BstMWI GCNNNNNNNGC 4 cut(s) 817, 957, 1155, 1231
BstNI CCWGG 2 cut(s) 420, 998
BstNSI RCATGY 1 cut(s) 295
BstSCI CCNGG 4 cut(s) 418, 633, 969, 996
BstSFI CTRYAG 2 cut(s) 867, 1111
BstSLI GKGCMC 2 cut(s) 427, 590
BstV2I GAAGAC 1 cut(s) 692
BstX2I RGATCY 3 cut(s) 157, 721, 1177
BstYI RGATCY 3 cut(s) 157, 721, 1177
BstZ17I GTATAC 1 cut(s) 1090
Bsu36I CCTNAGG 1 cut(s) 374
BsuI GTATCC 1 cut(s) 775
BsuRI GGCC 2 cut(s) 956, 1211
BtsCI GGATG 3 cut(s) 54, 310, 851
BtsI GCAGTG 1 cut(s) 17
BtsIMutI CAGTG 3 cut(s) 17, 496, 1030
BveI ACCTGC 1 cut(s) 85
Cac8I GCNNGC 3 cut(s) 286, 813, 958
CaiI CAGNNNCTG 1 cut(s) 823
CfoI GCGC 1 cut(s) 454
Cfr13I GGNCC 1 cut(s) 955
CseI GACGC 1 cut(s) 1147
Csp6I GTAC 2 cut(s) 403, 876
CviAII CATG 8 cut(s) 88, 134, 167, 280, 292, 618, 1163, 1192
CviQI GTAC 2 cut(s) 403, 876
DdeI CTNAG 7 cut(s) 321, 374, 495, 501, 662, 693, 816
DpnI GATC 6 cut(s) 159, 476, 667, 723, 803, 1179
DpnII GATC 6 cut(s) 157, 474, 665, 721, 801, 1177
Ecl136II GAGCTC 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 558
Eco24I GRGCYC 2 cut(s) 95, 507
Eco32I GATATC 1 cut(s) 901
Eco53kI GAGCTC 1 cut(s) 93
Eco57I CTGAAG 4 cut(s) 576, 797, 845, 1006
Eco81I CCTNAGG 1 cut(s) 374
EcoICRI GAGCTC 1 cut(s) 93
EcoRI GAATTC 1 cut(s) 227
EcoRII CCWGG 2 cut(s) 418, 996
EcoRV GATATC 1 cut(s) 901
EcoT14I CCWWGG 1 cut(s) 558
EcoT22I ATGCAT 1 cut(s) 1193
EcoT38I GRGCYC 2 cut(s) 95, 507
ErhI CCWWGG 1 cut(s) 558
FaeI CATG 8 cut(s) 91, 137, 170, 283, 295, 621, 1166, 1195
FaqI GGGAC 1 cut(s) 498
FatI CATG 8 cut(s) 87, 133, 166, 279, 291, 617, 1162, 1191
FauI CCCGC 1 cut(s) 965
FauNDI CATATG 1 cut(s) 1154
FbaI TGATCA 1 cut(s) 474
FblI GTMKAC 1 cut(s) 1089
Fnu4HI GCNGC 1 cut(s) 164
FokI GGATG 3 cut(s) 41, 317, 858
FriOI GRGCYC 2 cut(s) 95, 507
Fsp4HI GCNGC 1 cut(s) 164
FspBI CTAG 2 cut(s) 704, 717
GlaI GCGC 1 cut(s) 453
GluI GCNGC 1 cut(s) 164
HaeIII GGCC 2 cut(s) 956, 1211
HapII CCGG 2 cut(s) 635, 970
HgaI GACGC 1 cut(s) 1147
HhaI GCGC 1 cut(s) 454
Hin1I GRCGYC 1 cut(s) 917
Hin1II CATG 8 cut(s) 91, 137, 170, 283, 295, 621, 1166, 1195
Hin6I GCGC 1 cut(s) 452
HinP1I GCGC 1 cut(s) 452
HincII GTYRAC 2 cut(s) 397, 790
HindII GTYRAC 2 cut(s) 397, 790
HinfI GANTC 3 cut(s) 308, 697, 728
HpaI GTTAAC 1 cut(s) 397
HpaII CCGG 2 cut(s) 635, 970
Hpy166II GTNNAC 4 cut(s) 383, 397, 790, 1090
Hpy188I TCNGA 8 cut(s) 345, 471, 645, 665, 696, 915, 1130, 1256
Hpy188III TCNNGA 5 cut(s) 32, 538, 725, 761, 775
Hpy8I GTNNAC 4 cut(s) 383, 397, 790, 1090
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 6 cut(s) 107, 232, 600, 772, 1000, 1030
HpyCH4III ACNGT 3 cut(s) 491, 787, 871
HpyCH4IV ACGT 1 cut(s) 917
HpyCH4V TGCA 8 cut(s) 46, 128, 437, 547, 687, 1149, 1191, 1225
HpyF10VI GCNNNNNNNGC 4 cut(s) 817, 957, 1155, 1231
HpyF3I CTNAG 7 cut(s) 321, 374, 495, 501, 662, 693, 816
HpySE526I ACGT 1 cut(s) 917
Hsp92I GRCGYC 1 cut(s) 917
Hsp92II CATG 8 cut(s) 91, 137, 170, 283, 295, 621, 1166, 1195
HspAI GCGC 1 cut(s) 452
Ksp22I TGATCA 1 cut(s) 474
KspAI GTTAAC 1 cut(s) 397
Kzo9I GATC 6 cut(s) 157, 474, 665, 721, 801, 1177
LmnI GCTCC 2 cut(s) 943, 1055
LweI GCATC 2 cut(s) 836, 969
MaeI CTAG 2 cut(s) 704, 717
MaeII ACGT 1 cut(s) 917
MaeIII GTNAC 1 cut(s) 1025
MalI GATC 6 cut(s) 159, 476, 667, 723, 803, 1179
MboI GATC 6 cut(s) 157, 474, 665, 721, 801, 1177
MboII GAAGA 3 cut(s) 692, 986, 989
MfeI CAATTG 1 cut(s) 1205
MflI RGATCY 3 cut(s) 157, 721, 1177
MhlI GDGCHC 5 cut(s) 95, 427, 507, 590, 817
MlyI GAGTC 1 cut(s) 706
MmeI TCCRAC 1 cut(s) 1077
MnlI CCTC 7 cut(s) 33, 145, 295, 385, 526, 1076, 1132
Mph1103I ATGCAT 1 cut(s) 1193
MseI TTAA 7 cut(s) 396, 432, 552, 597, 611, 678, 1035
MslI CAYNNNNRTG 2 cut(s) 86, 171
MspI CCGG 2 cut(s) 635, 970
MspR9I CCNGG 4 cut(s) 420, 635, 971, 998
MunI CAATTG 1 cut(s) 1205
Mva1269I GAATGC 1 cut(s) 868
MvaI CCWGG 2 cut(s) 420, 998
MwoI GCNNNNNNNGC 4 cut(s) 817, 957, 1155, 1231
NciI CCSGG 2 cut(s) 635, 971
NdeI CATATG 1 cut(s) 1154
NdeII GATC 6 cut(s) 157, 474, 665, 721, 801, 1177
NlaIII CATG 8 cut(s) 91, 137, 170, 283, 295, 621, 1166, 1195
NlaIV GGNNCC 1 cut(s) 587
NmuCI GTSAC 1 cut(s) 1025
NsiI ATGCAT 1 cut(s) 1193
NspI RCATGY 1 cut(s) 295
PasI CCCWGGG 1 cut(s) 419
PciI ACATGT 1 cut(s) 291
PctI GAATGC 1 cut(s) 868
PfeI GAWTC 2 cut(s) 308, 728
PfoI TCCNGGA 1 cut(s) 969
PkrI GCNGC 1 cut(s) 165
PleI GAGTC 1 cut(s) 705
PpsI GAGTC 1 cut(s) 705
PscI ACATGT 1 cut(s) 291
Psp124BI GAGCTC 1 cut(s) 95
Psp6I CCWGG 2 cut(s) 418, 996
PspGI CCWGG 2 cut(s) 418, 996
PspN4I GGNNCC 1 cut(s) 587
PspPI GGNCC 1 cut(s) 955
PstNI CAGNNNCTG 1 cut(s) 823
PsuI RGATCY 3 cut(s) 157, 721, 1177
RsaI GTAC 2 cut(s) 404, 877
RsaNI GTAC 2 cut(s) 403, 876
RseI CAYNNNNRTG 2 cut(s) 86, 171
SacI GAGCTC 1 cut(s) 95
SaqAI TTAA 7 cut(s) 396, 432, 552, 597, 611, 678, 1035
SatI GCNGC 1 cut(s) 164
Sau3AI GATC 6 cut(s) 157, 474, 665, 721, 801, 1177
Sau96I GGNCC 1 cut(s) 955
ScaI AGTACT 1 cut(s) 877
SchI GAGTC 1 cut(s) 706
ScrFI CCNGG 4 cut(s) 420, 635, 971, 998
SduI GDGCHC 5 cut(s) 95, 427, 507, 590, 817
SfaNI GCATC 2 cut(s) 836, 969
SfcI CTRYAG 2 cut(s) 867, 1111
SmiMI CAYNNNNRTG 2 cut(s) 86, 171
SmlI CTYRAG 2 cut(s) 536, 761
SmoI CTYRAG 2 cut(s) 536, 761
SsiI CCGC 2 cut(s) 164, 958
SspMI CTAG 2 cut(s) 704, 717
SstI GAGCTC 1 cut(s) 95
StyD4I CCNGG 4 cut(s) 418, 633, 969, 996
StyI CCWWGG 1 cut(s) 558
TaaI ACNGT 3 cut(s) 491, 787, 871
TaiI ACGT 1 cut(s) 920
TaqI TCGA 1 cut(s) 147
TatI WGTACW 1 cut(s) 875
TauI GCSGC 1 cut(s) 166
TfiI GAWTC 2 cut(s) 308, 728
Tru1I TTAA 7 cut(s) 396, 432, 552, 597, 611, 678, 1035
Tru9I TTAA 7 cut(s) 396, 432, 552, 597, 611, 678, 1035
TscAI CASTG 3 cut(s) 24, 496, 1030
TseFI GTSAC 1 cut(s) 1025
Tsp45I GTSAC 1 cut(s) 1025
TspDTI ATGAA 3 cut(s) 190, 327, 606
TspGWI ACGGA 1 cut(s) 221
TspRI CASTG 3 cut(s) 24, 496, 1030
XapI RAATTY 6 cut(s) 227, 266, 457, 525, 748, 980
XceI RCATGY 1 cut(s) 295
XmiI GTMKAC 1 cut(s) 1089
XspI CTAG 2 cut(s) 704, 717
ZraI GACGTC 1 cut(s) 918
ZrmI AGTACT 1 cut(s) 877
Zsp2I ATGCAT 1 cut(s) 1193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.