Rh2DG103600

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000428
Physical Location & Seq
Reverse (-)
8419341 .. 8419787
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG103600.1

Sequence Viewer

Length: 447 bp
ATGGCGCCAAGTACGAGAAGACAAATATGCAGCAATGCAAACCCAAATAACAAAAGGGTCAAAAAGCAAGACCAAACAAAGGAAGGTCAAGAGCAGGTTGATCGAAACGCCATGGCTGTGGACACATTGCTACCTCACCTTCCAGACCTTATTGTTCACAAGATTTTCCGACTCATTCCCACTAAACTTGCCATACGCTTAACCATTATTTCTAAACAATGGGCAAGTGTGTGGTCTTTGGGAGTCCCCCTCTTAGATTTCGATGACGAGGGGGACTCTACTGATCATGATGGTGACAATCTCGTCCGCAGGAAGCTGTTGTTCATTGACTTTGTGGAAAGCTGTTTGAAACATTGCGAGAAAAAGAAGCTCTTGGAATTGGATAGTTTCAGGCTTCGAATGAGATATGATTCTGAATTAATTGGCGCGACAAGAATAGACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box LRR_2

Protein Analysis

148

Amino Acids

17.1

Weight (kDa)

8.81

Isoelectric Point (pI)

41.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 302
Acc36I ACCTGC 1 cut(s) 85
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 428
AciI CCGC 1 cut(s) 307
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 13
AfiI CCNNNNNNNGG 1 cut(s) 79
AgsI TTSAA 1 cut(s) 349
AluBI AGCT 3 cut(s) 316, 342, 370
AluI AGCT 3 cut(s) 316, 342, 370
ApeKI GCWGC 1 cut(s) 30
AseI ATTAAT 1 cut(s) 419
AspLEI GCGC 2 cut(s) 7, 428
AsuHPI GGTGA 2 cut(s) 128, 305
AsuII TTCGAA 1 cut(s) 397
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 25
BbvI GCAGC 1 cut(s) 42
BccI CCATC 1 cut(s) 284
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BclI TGATCA 1 cut(s) 283
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 85
BisI GCNGC 1 cut(s) 31
BlsI GCNGC 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 6
BpiI GAAGAC 1 cut(s) 25
BplI GAGNNNNNCTC 4 cut(s) 234, 266, 260, 292
Bpu14I TTCGAA 1 cut(s) 397
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 111
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse3DI GCAATG 3 cut(s) 40, 125, 352
BseDI CCNNGG 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMI GCAATG 3 cut(s) 40, 125, 352
BseXI GCAGC 1 cut(s) 42
Bsh1236I CGCG 1 cut(s) 428
BshNI GGYRCC 1 cut(s) 4
BslFI GGGAC 2 cut(s) 230, 287
BslI CCNNNNNNNGG 1 cut(s) 79
BsmFI GGGAC 2 cut(s) 230, 287
Bsp119I TTCGAA 1 cut(s) 397
Bsp143I GATC 2 cut(s) 100, 283
Bsp19I CCATGG 1 cut(s) 111
BspACI CCGC 1 cut(s) 307
BspFNI CGCG 1 cut(s) 428
BspHI TCATGA 1 cut(s) 286
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 85
BspT104I TTCGAA 1 cut(s) 397
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 3 cut(s) 40, 125, 352
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 2 cut(s) 100, 283
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 111
BstACI GRCGYC 1 cut(s) 5
BstBI TTCGAA 1 cut(s) 397
BstDEI CTNAG 1 cut(s) 253
BstDSI CCRYGG 1 cut(s) 111
BstFNI CGCG 1 cut(s) 428
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 428
BstKTI GATC 2 cut(s) 103, 286
BstMBI GATC 2 cut(s) 100, 283
BstUI CGCG 1 cut(s) 428
BstV1I GCAGC 1 cut(s) 42
BstV2I GAAGAC 1 cut(s) 25
BstXI CCANNNNNNTGG 1 cut(s) 118
BtgI CCRYGG 1 cut(s) 111
BveI ACCTGC 1 cut(s) 85
CciI TCATGA 1 cut(s) 286
CfoI GCGC 2 cut(s) 7, 428
Csp6I GTAC 1 cut(s) 12
CspCI CAANNNNNGTGG 2 cut(s) 169, 204
CviAII CATG 2 cut(s) 112, 287
CviJI RGCY 5 cut(s) 116, 316, 342, 370, 394
CviKI_1 RGCY 5 cut(s) 116, 316, 342, 370, 394
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 1 cut(s) 253
DinI GGCGCC 1 cut(s) 6
DpnI GATC 2 cut(s) 102, 285
DpnII GATC 2 cut(s) 100, 283
DrdI GACNNNNNNGTC 1 cut(s) 302
DseDI GACNNNNNNGTC 1 cut(s) 302
Eco130I CCWWGG 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 111
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 2 cut(s) 115, 290
FaiI YATR 5 cut(s) 28, 113, 194, 288, 408
FalI AAGNNNNNCTT 2 cut(s) 356, 388
FaqI GGGAC 2 cut(s) 230, 287
FatI CATG 2 cut(s) 111, 286
FbaI TGATCA 1 cut(s) 283
Fnu4HI GCNGC 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 31
GlaI GCGC 2 cut(s) 6, 427
GluI GCNGC 1 cut(s) 31
HaeII RGCGCY 1 cut(s) 8
HhaI GCGC 2 cut(s) 7, 428
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 115, 290
Hin6I GCGC 2 cut(s) 5, 426
HinP1I GCGC 2 cut(s) 5, 426
HinfI GANTC 4 cut(s) 171, 243, 275, 410
HphI GGTGA 2 cut(s) 128, 305
Hpy166II GTNNAC 2 cut(s) 121, 157
Hpy188I TCNGA 2 cut(s) 170, 415
Hpy188III TCNNGA 3 cut(s) 89, 143, 287
Hpy8I GTNNAC 2 cut(s) 121, 157
HpyAV CCTTC 2 cut(s) 77, 149
HpyCH4V TGCA 2 cut(s) 30, 38
HpyF3I CTNAG 1 cut(s) 253
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 115, 290
HspAI GCGC 2 cut(s) 5, 426
KasI GGCGCC 1 cut(s) 4
Ksp22I TGATCA 1 cut(s) 283
Kzo9I GATC 2 cut(s) 100, 283
LpnPI CCDG 4 cut(s) 80, 156, 295, 376
Lsp1109I GCAGC 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 293
MalI GATC 2 cut(s) 102, 285
MboI GATC 2 cut(s) 100, 283
MboII GAAGA 1 cut(s) 30
MluCI AATT 3 cut(s) 377, 416, 420
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 3 cut(s) 165, 252, 269
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 3 cut(s) 144, 260, 262
MseI TTAA 2 cut(s) 200, 419
MslI CAYNNNNRTG 2 cut(s) 116, 291
MvnI CGCG 1 cut(s) 428
NarI GGCGCC 1 cut(s) 5
NcoI CCATGG 1 cut(s) 111
NdeII GATC 2 cut(s) 100, 283
NlaIII CATG 2 cut(s) 115, 290
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 293
NspV TTCGAA 1 cut(s) 397
PagI TCATGA 1 cut(s) 286
PfeI GAWTC 1 cut(s) 410
PkrI GCNGC 1 cut(s) 32
PleI GAGTC 3 cut(s) 165, 251, 269
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 3 cut(s) 165, 251, 269
PshBI ATTAAT 1 cut(s) 419
PspN4I GGNNCC 1 cut(s) 6
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
RseI CAYNNNNRTG 2 cut(s) 116, 291
SaqAI TTAA 2 cut(s) 200, 419
SatI GCNGC 1 cut(s) 31
Sau3AI GATC 2 cut(s) 100, 283
SchI GAGTC 3 cut(s) 165, 252, 269
SetI ASST 8 cut(s) 88, 99, 136, 141, 150, 318, 344, 372
SfoI GGCGCC 1 cut(s) 6
SfuI TTCGAA 1 cut(s) 397
SmiMI CAYNNNNRTG 2 cut(s) 116, 291
Sse9I AATT 3 cut(s) 377, 416, 420
SsiI CCGC 1 cut(s) 307
SspDI GGCGCC 1 cut(s) 4
StyI CCWWGG 1 cut(s) 111
TaqI TCGA 3 cut(s) 103, 261, 397
TasI AATT 3 cut(s) 377, 416, 420
TfiI GAWTC 1 cut(s) 410
Tru1I TTAA 2 cut(s) 200, 419
Tru9I TTAA 2 cut(s) 200, 419
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 1 cut(s) 30
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 1 cut(s) 313
VspI ATTAAT 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.