MD17G1286200.v1.1

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0000428
Physical Location & Seq
Forward (+)
34575092 .. 34575937
846 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1286200.v1.1.491

Sequence Viewer

Length: 846 bp
ATGGCATGCCTTCACTTACCTGACCTCGTTACGCACAATATCATCCAAATTCTTCCCACCAAAGCTGCCGTCCGTATGAGTTTTCTTTCCAAGCAATGGGAAGGTGTGTGGTGTTCGAGCTCCGTCTTGGATTTCGACGAGGGTGACTATGAGGAAAGCATTGATTGTCGAGACAACCAAGGTGATAAGCATAGGAAGTTCATCAACATCTTGCTAAGATATTTGAGATCTTGTGGGAATGATAAGCAAAAGAAGCTGAAGTTACTTAAACTGAGGCTTCATATGAAGGGCTACTTGTTTAGAGAGGACCCTAGCATCGTTGATAAGTTATTAACTTGTTCGTTAGACAGAAACGTCAAAGAGTTAGATATAAGCCTCCGACTTGATAGATTATTTCAGAGGGATTGGCATGAGAATGAAAACTACTACTGCTTATCTAGAACCACCTTTCTTGATGCAACATCTATAACTACTCTCAATTTGGCGTATGTGAGGATAAAGGACATACGCAGTGCCAACAGTGGACGTCCTATAGATCATATAAGCCGGCTTCTTCCCTCCTTGAAAACAATGTCCCTCAACAATGTTCGCTTTGACAGGCACGCCCTCCGTTCCTTAATTTGGGAGTGCCCTTGTATTGAATACTTGTCATTAACTTCATCTTCTTTCGAAGATGATCAAGAAGACGCACTCTCCATGTTTTATATTTCAAGTTACAGTCTCAAGTTCTTGGAAGTCAAGTACTGCAAGGCTCAAGATATTCAAGTTGACCACACGGTAGATCTCATCTTGAATCTTTTACGTTTGTTTCATCAAAGTTTCTTCCCGTTGAGAGGATATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

282

Amino Acids

32.99

Weight (kDa)

7.57

Isoelectric Point (pI)

51.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 108 - 262 2.3e-08 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 353
AatII GACGTC 1 cut(s) 529
AccB7I CCANNNNNTGG 1 cut(s) 96
AcsI RAATTY 1 cut(s) 48
AcuI CTGAAG 1 cut(s) 278
AcyI GRCGYC 1 cut(s) 526
AfaI GTAC 1 cut(s) 743
AfiI CCNNNNNNNGG 3 cut(s) 96, 621, 833
AgsI TTSAA 5 cut(s) 565, 641, 711, 764, 793
AluBI AGCT 3 cut(s) 65, 120, 256
AluI AGCT 3 cut(s) 65, 120, 256
Alw21I GWGCWC 1 cut(s) 122
Alw26I GTCTC 2 cut(s) 165, 725
ApeKI GCWGC 1 cut(s) 65
ApoI RAATTY 1 cut(s) 48
ArsI GACNNNNNNTTYG 2 cut(s) 54, 86
AspS9I GGNCC 1 cut(s) 307
AsuHPI GGTGA 2 cut(s) 155, 194
AsuII TTCGAA 1 cut(s) 669
AvaII GGWCC 1 cut(s) 307
BaeGI GKGCMC 1 cut(s) 632
BanII GRGCYC 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 690
Bbv12I GWGCWC 1 cut(s) 122
BbvI GCAGC 1 cut(s) 52
BceAI ACGGC 1 cut(s) 53
BclI TGATCA 1 cut(s) 676
BcoDI GTCTC 2 cut(s) 165, 725
BfaI CTAG 2 cut(s) 312, 438
BfmI CTRYAG 1 cut(s) 531
BglII AGATCT 2 cut(s) 227, 781
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
BmcAI AGTACT 1 cut(s) 743
Bme18I GGWCC 1 cut(s) 307
BmgT120I GGNCC 1 cut(s) 307
BmiI GGNNCC 1 cut(s) 309
BmsI GCATC 2 cut(s) 324, 445
BpiI GAAGAC 1 cut(s) 690
Bpu14I TTCGAA 1 cut(s) 669
BpuEI CTTGAG 2 cut(s) 707, 738
BsaHI GRCGYC 1 cut(s) 526
BsaJI CCNNGG 1 cut(s) 178
BsaXI ACNNNNNCTCC 2 cut(s) 677, 707
Bsc4I CCNNNNNNNGG 3 cut(s) 96, 621, 833
Bse118I RCCGGY 1 cut(s) 546
Bse3DI GCAATG 1 cut(s) 101
BseDI CCNNGG 1 cut(s) 178
BseGI GGATG 1 cut(s) 42
BseLI CCNNNNNNNGG 3 cut(s) 96, 621, 833
BseMI GCAATG 1 cut(s) 101
BseMII CTCAG 1 cut(s) 263
BseSI GKGCMC 1 cut(s) 632
BseXI GCAGC 1 cut(s) 52
BsiHKAI GWGCWC 1 cut(s) 122
BsiSI CCGG 1 cut(s) 547
BslFI GGGAC 1 cut(s) 559
BslI CCNNNNNNNGG 3 cut(s) 96, 621, 833
BsmAI GTCTC 2 cut(s) 165, 725
BsmFI GGGAC 1 cut(s) 559
Bsp119I TTCGAA 1 cut(s) 669
Bsp1286I GDGCHC 2 cut(s) 122, 632
Bsp143I GATC 4 cut(s) 227, 535, 676, 781
BspCNI CTCAG 1 cut(s) 264
BspLI GGNNCC 1 cut(s) 309
BspT104I TTCGAA 1 cut(s) 669
BsrDI GCAATG 1 cut(s) 101
BsrFI RCCGGY 1 cut(s) 546
BssAI RCCGGY 1 cut(s) 546
BssECI CCNNGG 1 cut(s) 178
BssMI GATC 4 cut(s) 227, 535, 676, 781
BssNI GRCGYC 1 cut(s) 526
BssT1I CCWWGG 1 cut(s) 178
Bst4CI ACNGT 3 cut(s) 521, 719, 778
BstACI GRCGYC 1 cut(s) 526
BstBI TTCGAA 1 cut(s) 669
BstC8I GCNNGC 3 cut(s) 7, 548, 603
BstDEI CTNAG 2 cut(s) 215, 272
BstF5I GGATG 1 cut(s) 42
BstKTI GATC 4 cut(s) 230, 538, 679, 784
BstMAI GTCTC 2 cut(s) 165, 725
BstMBI GATC 4 cut(s) 227, 535, 676, 781
BstMWI GCNNNNNNNGC 1 cut(s) 253
BstNSI RCATGY 1 cut(s) 9
BstSFI CTRYAG 1 cut(s) 531
BstSLI GKGCMC 1 cut(s) 632
BstV1I GCAGC 1 cut(s) 52
BstV2I GAAGAC 1 cut(s) 690
BstX2I RGATCY 2 cut(s) 227, 781
BstYI RGATCY 2 cut(s) 227, 781
BtsCI GGATG 1 cut(s) 42
BtsI GCAGTG 1 cut(s) 517
BtsIMutI CAGTG 2 cut(s) 517, 526
Cac8I GCNNGC 3 cut(s) 7, 548, 603
Cfr10I RCCGGY 1 cut(s) 546
Cfr13I GGNCC 1 cut(s) 307
CseI GACGC 1 cut(s) 695
Csp6I GTAC 1 cut(s) 742
CspCI CAANNNNNGTGG 2 cut(s) 433, 468
CviAII CATG 3 cut(s) 6, 410, 697
CviJI RGCY 9 cut(s) 65, 120, 256, 277, 291, 375, 546, 550, 752
CviKI_1 RGCY 9 cut(s) 65, 120, 256, 277, 291, 375, 546, 550, 752
CviQI GTAC 1 cut(s) 742
DdeI CTNAG 2 cut(s) 215, 272
DpnI GATC 4 cut(s) 229, 537, 678, 783
DpnII GATC 4 cut(s) 227, 535, 676, 781
DrdI GACNNNNNNGTC 1 cut(s) 353
DseDI GACNNNNNNGTC 1 cut(s) 353
Ecl136II GAGCTC 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 178
Eco24I GRGCYC 1 cut(s) 122
Eco47I GGWCC 1 cut(s) 307
Eco53kI GAGCTC 1 cut(s) 120
Eco57I CTGAAG 1 cut(s) 278
EcoICRI GAGCTC 1 cut(s) 120
EcoO109I RGGNCCY 1 cut(s) 307
EcoT14I CCWWGG 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 122
ErhI CCWWGG 1 cut(s) 178
FaeI CATG 3 cut(s) 9, 413, 700
FalI AAGNNNNNCTT 2 cut(s) 278, 310
FaqI GGGAC 1 cut(s) 559
FatI CATG 3 cut(s) 5, 409, 696
FauNDI CATATG 1 cut(s) 282
FbaI TGATCA 1 cut(s) 676
Fnu4HI GCNGC 1 cut(s) 66
FokI GGATG 1 cut(s) 29
FriOI GRGCYC 1 cut(s) 122
Fsp4HI GCNGC 1 cut(s) 66
FspBI CTAG 2 cut(s) 312, 438
GluI GCNGC 1 cut(s) 66
HapII CCGG 1 cut(s) 547
HgaI GACGC 1 cut(s) 695
Hin1I GRCGYC 1 cut(s) 526
Hin1II CATG 3 cut(s) 9, 413, 700
HincII GTYRAC 1 cut(s) 769
HindII GTYRAC 1 cut(s) 769
HinfI GANTC 1 cut(s) 793
HpaII CCGG 1 cut(s) 547
HphI GGTGA 2 cut(s) 155, 194
Hpy166II GTNNAC 2 cut(s) 524, 769
Hpy188I TCNGA 2 cut(s) 380, 399
Hpy188III TCNNGA 6 cut(s) 170, 438, 452, 680, 755, 790
Hpy8I GTNNAC 2 cut(s) 524, 769
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 3 cut(s) 20, 95, 280
HpyCH4III ACNGT 3 cut(s) 521, 719, 778
HpyCH4IV ACGT 3 cut(s) 354, 526, 802
HpyCH4V TGCA 2 cut(s) 458, 747
HpyF10VI GCNNNNNNNGC 1 cut(s) 253
HpyF3I CTNAG 2 cut(s) 215, 272
HpySE526I ACGT 3 cut(s) 354, 526, 802
Hsp92I GRCGYC 1 cut(s) 526
Hsp92II CATG 3 cut(s) 9, 413, 700
KroI GCCGGC 1 cut(s) 546
KroNI GCCGGC 1 cut(s) 548
Ksp22I TGATCA 1 cut(s) 676
Kzo9I GATC 4 cut(s) 227, 535, 676, 781
LmnI GCTCC 1 cut(s) 125
LpnPI CCDG 3 cut(s) 33, 560, 583
Lsp1109I GCAGC 1 cut(s) 52
LweI GCATC 2 cut(s) 324, 445
MaeI CTAG 2 cut(s) 312, 438
MaeII ACGT 3 cut(s) 354, 526, 802
MaeIII GTNAC 4 cut(s) 28, 143, 261, 713
MalI GATC 4 cut(s) 229, 537, 678, 783
MboI GATC 4 cut(s) 227, 535, 676, 781
MboII GAAGA 6 cut(s) 44, 545, 654, 683, 695, 814
MflI RGATCY 2 cut(s) 227, 781
MhlI GDGCHC 2 cut(s) 122, 632
MluCI AATT 3 cut(s) 48, 478, 618
MmeI TCCRAC 1 cut(s) 403
MroNI GCCGGC 1 cut(s) 546
MseI TTAA 4 cut(s) 267, 332, 617, 653
MslI CAYNNNNRTG 1 cut(s) 414
MspI CCGG 1 cut(s) 547
MwoI GCNNNNNNNGC 1 cut(s) 253
NaeI GCCGGC 1 cut(s) 548
NdeI CATATG 1 cut(s) 282
NdeII GATC 4 cut(s) 227, 535, 676, 781
NgoMIV GCCGGC 1 cut(s) 546
NlaIII CATG 3 cut(s) 9, 413, 700
NlaIV GGNNCC 1 cut(s) 309
NmuCI GTSAC 1 cut(s) 143
NspI RCATGY 1 cut(s) 9
NspV TTCGAA 1 cut(s) 669
PaeI GCATGC 1 cut(s) 9
PdiI GCCGGC 1 cut(s) 548
PfeI GAWTC 1 cut(s) 793
PflMI CCANNNNNTGG 1 cut(s) 96
PkrI GCNGC 1 cut(s) 67
PpuMI RGGWCCY 1 cut(s) 307
Psp124BI GAGCTC 1 cut(s) 122
Psp5II RGGWCCY 1 cut(s) 307
PspN4I GGNNCC 1 cut(s) 309
PspPI GGNCC 1 cut(s) 307
PspPPI RGGWCCY 1 cut(s) 307
PsuI RGATCY 2 cut(s) 227, 781
RsaI GTAC 1 cut(s) 743
RsaNI GTAC 1 cut(s) 742
RseI CAYNNNNRTG 1 cut(s) 414
SacI GAGCTC 1 cut(s) 122
SaqAI TTAA 4 cut(s) 267, 332, 617, 653
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 4 cut(s) 227, 535, 676, 781
Sau96I GGNCC 1 cut(s) 307
ScaI AGTACT 1 cut(s) 743
SduI GDGCHC 2 cut(s) 122, 632
SfaNI GCATC 2 cut(s) 324, 445
SfcI CTRYAG 1 cut(s) 531
SfuI TTCGAA 1 cut(s) 669
SinI GGWCC 1 cut(s) 307
SmiMI CAYNNNNRTG 1 cut(s) 414
SmlI CTYRAG 2 cut(s) 722, 753
SmoI CTYRAG 2 cut(s) 722, 753
SphI GCATGC 1 cut(s) 9
Sse9I AATT 3 cut(s) 48, 478, 618
SspMI CTAG 2 cut(s) 312, 438
SstI GAGCTC 1 cut(s) 122
StyI CCWWGG 1 cut(s) 178
TaaI ACNGT 3 cut(s) 521, 719, 778
TaiI ACGT 3 cut(s) 357, 529, 805
TaqI TCGA 4 cut(s) 116, 135, 169, 669
TasI AATT 3 cut(s) 48, 478, 618
TatI WGTACW 1 cut(s) 741
TfiI GAWTC 1 cut(s) 793
Tru1I TTAA 4 cut(s) 267, 332, 617, 653
Tru9I TTAA 4 cut(s) 267, 332, 617, 653
TscAI CASTG 2 cut(s) 517, 526
TseFI GTSAC 1 cut(s) 143
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 6 cut(s) 190, 269, 299, 432, 648, 800
TspGWI ACGGA 3 cut(s) 62, 112, 599
TspRI CASTG 2 cut(s) 517, 526
Van91I CCANNNNNTGG 1 cut(s) 96
VpaK11BI GGWCC 1 cut(s) 307
XapI RAATTY 1 cut(s) 48
XbaI TCTAGA 1 cut(s) 437
XceI RCATGY 1 cut(s) 9
XspI CTAG 2 cut(s) 312, 438
ZraI GACGTC 1 cut(s) 527
ZrmI AGTACT 1 cut(s) 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.