FvH4_7g20022

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000428
Physical Location & Seq
Reverse (-)
16373109 .. 16374443
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g20022.t1

Sequence Viewer

Length: 1245 bp
ATGGCTGTCAACACCGTAGGTCGACCTGACTTACCCGACCTTGTTATTTACGACATCTTTCGACGTCTTCCGACTAAAGCTGCCGCCCGCTTCAGCTTGCTTTCCAAGAAGTGGGAGGGCATCTTGGCTTGTCTCCCCATACTAGATTTCGACGAGGGTGGTGATCAGAATGGTGACAACAACTCGGAACGACATAAGAAGTTCGTCGACAACATTTTGATAAAGTACTTGGAATTATATGAGAGGGAGAAACAGAAACAACTCTTGGACAAGTTCAGGCTTCACATGACGAGCTATTTATACAAGGACGCCAACTTGGTGAATAATTTGCTCAGTCTTTCATTCAAGAGAAGCGTGAAAGAAGTGGATATCAGCCTTAGGGTTAGTAAATTAGACTGGAATCGAGGTTGGCCTAAAAGTAAGGTGGTGATGCCTGAGTCTACATCTACAGCCCTTCTTCCCTCTTTGAAAACTGTCGCCCTAAAAAATGTGTATTTTGATCGCAAGGCTCTCTTCTCCCTAATTGGCGACTGCCCTTCAATTGAGAATCTATCCTTAATATCATGTTCCTTTGCTTGTTCTGAGATCTGTTTCTCAAGCTCTAGTCTCAAGATGTTTGAAGCCAAGTATTGCAAGGCCAGTGAAATTGTAGTTTACAAAGCTGTCAATCTTGAATCAGTCACAATTGTTTCGTCGTCGAGCAATTCTCTGATTGAGAGGGTGATCTTGAAAAAATGCTGCAATTTGAGATATATGGACATACATGGCAGTCACATGACACTGTTTCATTTAGAAGACTGCCGTGAAGTGAAGGGAACAATCAGGGCTCCAAATCTGGATTATTTCAGTTTCGAAGGTTACTTGAACTCCAATGTTTCTTTGGAAGCTCCAAGATTAACAGTGGCTCGCATCATGTTATTGGATACATGGGACGGCGAACTATCCTCCTCCAACGAGCCATGGAAACATTTCCCTAAACTGAAAGATTTCCTTGCAGAATTTGGCAGCTCAATAGAGATGATCCTCTTTGTTCGGGATTTGAAGGCCCTCATGTTTCCGGAAAGTTTCCGAAATGCCTTATCTTCACCGATATTGCCTAAACTCAGACAGTTGGATTTGGCGACTTACATCTATCCAGCAGAGGGGAAAGATTGGAAAGAACTGATGAAGTGCTTTCGTTGGATGTCACCTTCAGCGTCTATAGTTCAACTCGAGTACAATGAAGAATTGGGCGAGTTCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box LRR_2

Protein Analysis

415

Amino Acids

47.43

Weight (kDa)

7.93

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 146 - 265 7.1e-12 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 67
AccB7I CCANNNNNTGG 1 cut(s) 111
AccI GTMKAC 3 cut(s) 22, 207, 440
AccIII TCCGGA 1 cut(s) 1057
AciI CCGC 2 cut(s) 84, 88
AclWI GGATC 1 cut(s) 1015
AcsI RAATTY 1 cut(s) 998
AcuI CTGAAG 2 cut(s) 76, 1176
AcyI GRCGYC 2 cut(s) 64, 309
AfaI GTAC 2 cut(s) 227, 1217
AfiI CCNNNNNNNGG 2 cut(s) 111, 1142
AgsI TTSAA 9 cut(s) 346, 469, 540, 620, 674, 730, 865, 1042, 1208
AjuI GAANNNNNNNTTGG 2 cut(s) 248, 280
AluBI AGCT 7 cut(s) 80, 96, 294, 600, 662, 887, 1008
AluI AGCT 7 cut(s) 80, 96, 294, 600, 662, 887, 1008
Alw26I GTCTC 2 cut(s) 137, 611
AlwI GGATC 1 cut(s) 1015
Ama87I CYCGRG 1 cut(s) 1211
Aor13HI TCCGGA 1 cut(s) 1057
AoxI GGCC 3 cut(s) 410, 636, 1044
ApeKI GCWGC 3 cut(s) 80, 738, 1005
ApoI RAATTY 1 cut(s) 998
Asp700I GAANNNNTTC 2 cut(s) 968, 986
AspS9I GGNCC 1 cut(s) 1045
AsuHPI GGTGA 7 cut(s) 173, 185, 331, 439, 733, 1077, 1179
AsuII TTCGAA 1 cut(s) 852
AvaI CYCGRG 1 cut(s) 1211
AxyI CCTNAGG 1 cut(s) 377
BanII GRGCYC 1 cut(s) 829
BbsI GAAGAC 2 cut(s) 59, 801
BbvI GCAGC 3 cut(s) 67, 725, 1017
BceAI ACGGC 2 cut(s) 786, 949
BciVI GTATCC 1 cut(s) 916
BclI TGATCA 1 cut(s) 163
BcoDI GTCTC 2 cut(s) 137, 611
BfaI CTAG 2 cut(s) 143, 603
BfmI CTRYAG 2 cut(s) 447, 1200
BfuI GTATCC 1 cut(s) 916
BglII AGATCT 1 cut(s) 585
BisI GCNGC 4 cut(s) 81, 84, 739, 1006
BlsI GCNGC 4 cut(s) 82, 85, 740, 1007
BmcAI AGTACT 1 cut(s) 227
BmeT110I CYCGRG 1 cut(s) 1211
BmgT120I GGNCC 1 cut(s) 1045
BmiI GGNNCC 1 cut(s) 828
BmsI GCATC 3 cut(s) 129, 420, 918
BpiI GAAGAC 2 cut(s) 59, 801
BplI GAGNNNNNCTC 2 cut(s) 691, 723
Bpu14I TTCGAA 1 cut(s) 852
BpuEI CTTGAG 2 cut(s) 580, 593
BsaHI GRCGYC 2 cut(s) 64, 309
BsaJI CCNNGG 1 cut(s) 959
BsaWI WCCGGW 1 cut(s) 1057
BsaXI ACNNNNNCTCC 2 cut(s) 851, 881
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 1142
Bse1I ACTGG 2 cut(s) 401, 639
Bse21I CCTNAGG 1 cut(s) 377
BseAI TCCGGA 1 cut(s) 1057
BseDI CCNNGG 1 cut(s) 959
BseGI GGATG 1 cut(s) 1188
BseLI CCNNNNNNNGG 2 cut(s) 111, 1142
BseMII CTCAG 4 cut(s) 346, 426, 573, 1117
BseNI ACTGG 2 cut(s) 401, 639
BseRI GAGGAG 1 cut(s) 937
BseXI GCAGC 3 cut(s) 67, 725, 1017
BshFI GGCC 3 cut(s) 412, 638, 1046
BsiHKCI CYCGRG 1 cut(s) 1211
BsiSI CCGG 1 cut(s) 1058
BslFI GGGAC 1 cut(s) 944
BslI CCNNNNNNNGG 2 cut(s) 111, 1142
BsmAI GTCTC 2 cut(s) 137, 611
BsmFI GGGAC 1 cut(s) 944
BsnI GGCC 3 cut(s) 412, 638, 1046
BsoBI CYCGRG 1 cut(s) 1211
Bsp119I TTCGAA 1 cut(s) 852
Bsp1286I GDGCHC 1 cut(s) 829
Bsp13I TCCGGA 1 cut(s) 1057
Bsp143I GATC 5 cut(s) 163, 499, 585, 723, 1020
Bsp19I CCATGG 1 cut(s) 959
BspACI CCGC 2 cut(s) 84, 88
BspANI GGCC 3 cut(s) 412, 638, 1046
BspCNI CTCAG 4 cut(s) 345, 427, 574, 1116
BspEI TCCGGA 1 cut(s) 1057
BspLI GGNNCC 1 cut(s) 828
BspPI GGATC 1 cut(s) 1015
BspT104I TTCGAA 1 cut(s) 852
BsrI ACTGG 2 cut(s) 401, 639
BssECI CCNNGG 1 cut(s) 959
BssMI GATC 5 cut(s) 163, 499, 585, 723, 1020
BssNI GRCGYC 2 cut(s) 64, 309
BssT1I CCWWGG 1 cut(s) 959
Bst4CI ACNGT 5 cut(s) 16, 475, 783, 901, 1110
Bst6I CTCTTC 1 cut(s) 518
BstACI GRCGYC 2 cut(s) 64, 309
BstBI TTCGAA 1 cut(s) 852
BstC8I GCNNGC 3 cut(s) 88, 98, 907
BstDEI CTNAG 5 cut(s) 332, 377, 435, 582, 1103
BstDSI CCRYGG 1 cut(s) 959
BstF5I GGATG 1 cut(s) 1188
BstKTI GATC 5 cut(s) 166, 502, 588, 726, 1023
BstMAI GTCTC 2 cut(s) 137, 611
BstMBI GATC 5 cut(s) 163, 499, 585, 723, 1020
BstSFI CTRYAG 2 cut(s) 447, 1200
BstV1I GCAGC 3 cut(s) 67, 725, 1017
BstV2I GAAGAC 2 cut(s) 59, 801
BstX2I RGATCY 1 cut(s) 585
BstYI RGATCY 1 cut(s) 585
Bsu36I CCTNAGG 1 cut(s) 377
BsuI GTATCC 1 cut(s) 916
BsuRI GGCC 3 cut(s) 412, 638, 1046
BtgI CCRYGG 1 cut(s) 959
BtsCI GGATG 1 cut(s) 1188
BtsIMutI CAGTG 3 cut(s) 646, 779, 906
Cac8I GCNNGC 3 cut(s) 88, 98, 907
Cfr13I GGNCC 1 cut(s) 1045
CseI GACGC 2 cut(s) 317, 1185
Csp6I GTAC 2 cut(s) 226, 1216
CviAII CATG 8 cut(s) 286, 564, 764, 775, 913, 927, 960, 1051
CviQI GTAC 2 cut(s) 226, 1216
DdeI CTNAG 5 cut(s) 332, 377, 435, 582, 1103
DpnI GATC 5 cut(s) 165, 501, 587, 725, 1022
DpnII GATC 5 cut(s) 163, 499, 585, 723, 1020
Eam1104I CTCTTC 1 cut(s) 518
EarI CTCTTC 1 cut(s) 518
Eco130I CCWWGG 1 cut(s) 959
Eco24I GRGCYC 1 cut(s) 829
Eco32I GATATC 1 cut(s) 370
Eco57I CTGAAG 2 cut(s) 76, 1176
Eco81I CCTNAGG 1 cut(s) 377
Eco88I CYCGRG 1 cut(s) 1211
EcoO109I RGGNCCY 1 cut(s) 1045
EcoRV GATATC 1 cut(s) 370
EcoT14I CCWWGG 1 cut(s) 959
EcoT38I GRGCYC 1 cut(s) 829
ErhI CCWWGG 1 cut(s) 959
FaeI CATG 8 cut(s) 289, 567, 767, 778, 916, 930, 963, 1054
FalI AAGNNNNNCTT 4 cut(s) 497, 529, 975, 1007
FaqI GGGAC 1 cut(s) 944
FatI CATG 8 cut(s) 285, 563, 763, 774, 912, 926, 959, 1050
FauI CCCGC 1 cut(s) 95
FbaI TGATCA 1 cut(s) 163
FblI GTMKAC 3 cut(s) 22, 207, 440
Fnu4HI GCNGC 4 cut(s) 81, 84, 739, 1006
FokI GGATG 1 cut(s) 1195
FriOI GRGCYC 1 cut(s) 829
Fsp4HI GCNGC 4 cut(s) 81, 84, 739, 1006
FspBI CTAG 2 cut(s) 143, 603
GluI GCNGC 4 cut(s) 81, 84, 739, 1006
HaeIII GGCC 3 cut(s) 412, 638, 1046
HapII CCGG 1 cut(s) 1058
HgaI GACGC 2 cut(s) 317, 1185
Hin1I GRCGYC 2 cut(s) 64, 309
Hin1II CATG 8 cut(s) 289, 567, 767, 778, 916, 930, 963, 1054
HincII GTYRAC 3 cut(s) 10, 23, 208
HindII GTYRAC 3 cut(s) 10, 23, 208
HinfI GANTC 4 cut(s) 400, 437, 547, 674
HpaII CCGG 1 cut(s) 1058
HphI GGTGA 7 cut(s) 173, 185, 331, 439, 733, 1077, 1179
Hpy166II GTNNAC 5 cut(s) 10, 23, 208, 441, 655
Hpy188I TCNGA 7 cut(s) 72, 168, 187, 583, 711, 1070, 1106
Hpy188III TCNNGA 7 cut(s) 346, 610, 671, 727, 836, 1034, 1058
Hpy8I GTNNAC 5 cut(s) 10, 23, 208, 441, 655
Hpy99I CGWCG 5 cut(s) 66, 155, 209, 697, 700
HpyAV CCTTC 6 cut(s) 464, 546, 805, 848, 1036, 1200
HpyCH4III ACNGT 5 cut(s) 16, 475, 783, 901, 1110
HpyCH4IV ACGT 1 cut(s) 64
HpyCH4V TGCA 3 cut(s) 633, 741, 995
HpyF3I CTNAG 5 cut(s) 332, 377, 435, 582, 1103
HpySE526I ACGT 1 cut(s) 64
Hsp92I GRCGYC 2 cut(s) 64, 309
Hsp92II CATG 8 cut(s) 289, 567, 767, 778, 916, 930, 963, 1054
Kpn2I TCCGGA 1 cut(s) 1057
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 5 cut(s) 163, 499, 585, 723, 1020
LmnI GCTCC 2 cut(s) 832, 892
LpnPI CCDG 9 cut(s) 39, 262, 382, 447, 652, 808, 821, 1071, 1149
Lsp1109I GCAGC 3 cut(s) 67, 725, 1017
LweI GCATC 3 cut(s) 129, 420, 918
MaeI CTAG 2 cut(s) 143, 603
MaeII ACGT 1 cut(s) 64
MaeIII GTNAC 5 cut(s) 173, 679, 770, 857, 1185
MalI GATC 5 cut(s) 165, 501, 587, 725, 1022
MboI GATC 5 cut(s) 163, 499, 585, 723, 1020
MboII GAAGA 6 cut(s) 59, 449, 505, 806, 1074, 1235
MfeI CAATTG 2 cut(s) 540, 684
MflI RGATCY 1 cut(s) 585
MhlI GDGCHC 1 cut(s) 829
MlyI GAGTC 1 cut(s) 446
MmeI TCCRAC 4 cut(s) 95, 975, 1092, 1160
MroI TCCGGA 1 cut(s) 1057
MroXI GAANNNNTTC 2 cut(s) 968, 986
MseI TTAA 2 cut(s) 557, 896
MspI CCGG 1 cut(s) 1058
MunI CAATTG 2 cut(s) 540, 684
NcoI CCATGG 1 cut(s) 959
NdeII GATC 5 cut(s) 163, 499, 585, 723, 1020
NlaIII CATG 8 cut(s) 289, 567, 767, 778, 916, 930, 963, 1054
NlaIV GGNNCC 1 cut(s) 828
NmuCI GTSAC 4 cut(s) 173, 679, 770, 1185
NspV TTCGAA 1 cut(s) 852
PaeR7I CTCGAG 1 cut(s) 1211
PdmI GAANNNNTTC 2 cut(s) 968, 986
PfeI GAWTC 3 cut(s) 400, 547, 674
PflMI CCANNNNNTGG 1 cut(s) 111
PkrI GCNGC 4 cut(s) 82, 85, 740, 1007
PleI GAGTC 1 cut(s) 445
PpsI GAGTC 1 cut(s) 445
PspN4I GGNNCC 1 cut(s) 828
PspPI GGNCC 1 cut(s) 1045
PspXI VCTCGAGB 1 cut(s) 1211
PsuI RGATCY 1 cut(s) 585
RsaI GTAC 2 cut(s) 227, 1217
RsaNI GTAC 2 cut(s) 226, 1216
SalI GTCGAC 2 cut(s) 21, 206
SaqAI TTAA 2 cut(s) 557, 896
SatI GCNGC 4 cut(s) 81, 84, 739, 1006
Sau3AI GATC 5 cut(s) 163, 499, 585, 723, 1020
Sau96I GGNCC 1 cut(s) 1045
ScaI AGTACT 1 cut(s) 227
SchI GAGTC 1 cut(s) 446
SduI GDGCHC 1 cut(s) 829
SfaNI GCATC 3 cut(s) 129, 420, 918
SfcI CTRYAG 2 cut(s) 447, 1200
Sfr274I CTCGAG 1 cut(s) 1211
SfuI TTCGAA 1 cut(s) 852
SlaI CTCGAG 1 cut(s) 1211
SmlI CTYRAG 3 cut(s) 595, 608, 1211
SmoI CTYRAG 3 cut(s) 595, 608, 1211
SsiI CCGC 2 cut(s) 84, 88
SspMI CTAG 2 cut(s) 143, 603
StyI CCWWGG 1 cut(s) 959
TaaI ACNGT 5 cut(s) 16, 475, 783, 901, 1110
TaiI ACGT 1 cut(s) 67
TaqI TCGA 8 cut(s) 22, 61, 150, 207, 403, 698, 852, 1212
TatI WGTACW 2 cut(s) 225, 1215
TauI GCSGC 1 cut(s) 86
TfiI GAWTC 3 cut(s) 400, 547, 674
Tru1I TTAA 2 cut(s) 557, 896
Tru9I TTAA 2 cut(s) 557, 896
TscAI CASTG 3 cut(s) 646, 786, 906
TseFI GTSAC 4 cut(s) 173, 679, 770, 1185
TseI GCWGC 3 cut(s) 80, 738, 1005
Tsp45I GTSAC 4 cut(s) 173, 679, 770, 1185
TspDTI ATGAA 4 cut(s) 330, 776, 1181, 1236
TspRI CASTG 3 cut(s) 646, 786, 906
Van91I CCANNNNNTGG 1 cut(s) 111
XapI RAATTY 1 cut(s) 998
XcmI CCANNNNNNNNNTGG 1 cut(s) 877
XhoI CTCGAG 1 cut(s) 1211
XmiI GTMKAC 3 cut(s) 22, 207, 440
XmnI GAANNNNTTC 2 cut(s) 968, 986
XspI CTAG 2 cut(s) 143, 603
ZraI GACGTC 1 cut(s) 65
ZrmI AGTACT 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.