Rmu_sc0024070.1_g000003

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0024070.1
OG0000428
Physical Location & Seq
Reverse (-)
7045 .. 8322
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0024070.1_g000003.1.cds

Sequence Viewer

Length: 1278 bp
atggctcacttaccggacctggttatcaaccaaatcttccgacttgttaccactaaaaccgctgttcgcatgagctttctttccaagcaatgggaaggcatgttgtcttcactccccatgttagactttgacgagggtggtgatcatcggtttgaccaaaacgacaactttattcagcacagcaagttcatcaacatcttacaaaagtatttggaactatgtgagaaagatcgagaagcaacaaaaacaactcccttagacaaattcaggcttcgcatgacgagatactcatctagagacgccagtatggtgtataagttgctgtctagttcaatcgagagaagcgtgaaagagttggatatcagccttagagggtgtaccgtgaaaaattactactacctgtgccggaccaaccttatcaatgcaaaaactctaaccactctaaatttggagtatgtgagaatgaagaacattgacagttgtgtcgagcctattgactactctatctctctgcgccttcttccttctttgaaaaccatgtctcttaaaactgttcaatttgatcacactgctctcttcttcttagtttgggagtgccctttcatcgagcatctttccttggcttcatgttcttttgaactctccgagattcgtcttttaagtcccacactcaaatccttggaaattaagcactgcaaggcttctcaagctgtactttatgtcgaagatcttgaatctctttccatcgtttcatcagactttccgttggaaggcgtgatcttggaaagatgcttcaaattgaaacatgttaatatatgtgctcagttcttggaatggttttatttacaaggacaatgccatgatgttaatgccgtaatcgacgctccagccctattttttttcagtttcagaggtcatttagagtccaaattttctttgaaagctccaagtttacgtaaatcccgtatcatactattgaacgaagaattatcctccttcaccgggcaatggaagcattttcctaaactgaaagattttctccaagaatttggtagttgcaaagagatggtcctctatgttgacgattttgaggttctcatatttccagaagatttcagaaagaccttggcttcaccaatattggcagatctcgaatttctagaacttacaattgagaaccctcctacatatgagagagataagcaaaacttgaaggactccttgcattggatggcacctgctctgaagcttattgagtcggatgtgtatttaaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

425

Amino Acids

49.41

Weight (kDa)

6.04

Isoelectric Point (pI)

45.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1246
AasI GACNNNNNNGTC 1 cut(s) 482
Acc36I ACCTGC 1 cut(s) 1246
AccB1I GGYRCC 1 cut(s) 1234
AccB7I CCANNNNNTGG 1 cut(s) 90
AciI CCGC 1 cut(s) 60
AcsI RAATTY 5 cut(s) 263, 445, 929, 1046, 1154
AcuI CTGAAG 1 cut(s) 1265
AcyI GRCGYC 1 cut(s) 300
AfaI GTAC 2 cut(s) 379, 714
AfiI CCNNNNNNNGG 5 cut(s) 90, 770, 1002, 1008, 1227
AflIII ACRYGT 1 cut(s) 805
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 4 cut(s) 75, 710, 944, 1249
AluI AGCT 4 cut(s) 75, 710, 944, 1249
Alw21I GWGCWC 1 cut(s) 823
Alw26I GTCTC 2 cut(s) 291, 546
ApoI RAATTY 5 cut(s) 263, 445, 929, 1046, 1154
ArsI GACNNNNNNTTYG 2 cut(s) 1053, 1085
AspLEI GCGC 1 cut(s) 516
AspS9I GGNCC 3 cut(s) 16, 408, 1069
AsuC2I CCSGG 1 cut(s) 1003
AsuHPI GGTGA 3 cut(s) 152, 991, 1125
AvaII GGWCC 3 cut(s) 16, 408, 1069
BaeGI GKGCMC 1 cut(s) 599
BanI GGYRCC 1 cut(s) 1234
BbsI GAAGAC 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 823
BccI CCATC 3 cut(s) 752, 1060, 1225
BceAI ACGGC 1 cut(s) 857
BciT130I CCWGG 1 cut(s) 20
BclI TGATCA 2 cut(s) 142, 562
BcnI CCSGG 1 cut(s) 1003
BcoDI GTCTC 2 cut(s) 291, 546
BfaI CTAG 4 cut(s) 294, 327, 1160, 1276
BfuAI ACCTGC 1 cut(s) 1246
BglII AGATCT 2 cut(s) 727, 1147
Bme1390I CCNGG 2 cut(s) 20, 1003
Bme18I GGWCC 3 cut(s) 16, 408, 1069
BmgT120I GGNCC 3 cut(s) 16, 408, 1069
BmiI GGNNCC 1 cut(s) 1236
BmrFI CCNGG 2 cut(s) 20, 1003
BmsI GCATC 2 cut(s) 619, 779
BpiI GAAGAC 1 cut(s) 99
BpmI CTGGAG 1 cut(s) 870
BpuEI CTTGAG 1 cut(s) 690
BpuMI CCSGG 1 cut(s) 1003
BsaAI YACGTR 1 cut(s) 956
BsaBI GATNNNNATC 1 cut(s) 289
BsaHI GRCGYC 1 cut(s) 300
BsaJI CCNNGG 3 cut(s) 618, 678, 1125
BsaWI WCCGGW 1 cut(s) 13
Bsc4I CCNNNNNNNGG 5 cut(s) 90, 770, 1002, 1008, 1227
Bse1I ACTGG 1 cut(s) 303
Bse3DI GCAATG 2 cut(s) 95, 1013
Bse8I GATNNNNATC 1 cut(s) 289
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 3 cut(s) 618, 678, 1125
BseGI GGATG 2 cut(s) 1236, 1267
BseJI GATNNNNATC 1 cut(s) 289
BseLI CCNNNNNNNGG 5 cut(s) 90, 770, 1002, 1008, 1227
BseMI GCAATG 2 cut(s) 95, 1013
BseMII CTCAG 1 cut(s) 836
BseNI ACTGG 1 cut(s) 303
BseSI GKGCMC 1 cut(s) 599
BshNI GGYRCC 1 cut(s) 1234
BsiHKAI GWGCWC 1 cut(s) 823
BsiSI CCGG 3 cut(s) 14, 406, 1002
BslFI GGGAC 1 cut(s) 648
BslI CCNNNNNNNGG 5 cut(s) 90, 770, 1002, 1008, 1227
BsmAI GTCTC 2 cut(s) 291, 546
BsmBI CGTCTC 1 cut(s) 291
BsmFI GGGAC 1 cut(s) 648
Bsp1286I GDGCHC 2 cut(s) 599, 823
Bsp143I GATC 6 cut(s) 142, 229, 562, 727, 777, 1147
BspACI CCGC 1 cut(s) 60
BspCNI CTCAG 1 cut(s) 835
BspLI GGNNCC 1 cut(s) 1236
BspMI ACCTGC 1 cut(s) 1246
BspT107I GGYRCC 1 cut(s) 1234
BsrDI GCAATG 2 cut(s) 95, 1013
BsrI ACTGG 1 cut(s) 303
BssECI CCNNGG 3 cut(s) 618, 678, 1125
BssMI GATC 6 cut(s) 142, 229, 562, 727, 777, 1147
BssNI GRCGYC 1 cut(s) 300
BssT1I CCWWGG 3 cut(s) 618, 678, 1125
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 3 cut(s) 382, 479, 553
Bst6I CTCTTC 1 cut(s) 581
BstACI GRCGYC 1 cut(s) 300
BstBAI YACGTR 1 cut(s) 956
BstDEI CTNAG 4 cut(s) 256, 368, 583, 822
BstF5I GGATG 2 cut(s) 1236, 1267
BstHHI GCGC 1 cut(s) 516
BstKTI GATC 6 cut(s) 145, 232, 565, 730, 780, 1150
BstMAI GTCTC 2 cut(s) 291, 546
BstMBI GATC 6 cut(s) 142, 229, 562, 727, 777, 1147
BstMWI GCNNNNNNNGC 2 cut(s) 707, 1012
BstNI CCWGG 1 cut(s) 20
BstNSI RCATGY 2 cut(s) 103, 809
BstSCI CCNGG 2 cut(s) 18, 1001
BstSLI GKGCMC 1 cut(s) 599
BstSNI TACGTA 1 cut(s) 956
BstV2I GAAGAC 1 cut(s) 99
BstX2I RGATCY 2 cut(s) 727, 1147
BstXI CCANNNNNNTGG 1 cut(s) 1049
BstYI RGATCY 2 cut(s) 727, 1147
BtsCI GGATG 2 cut(s) 1236, 1267
BtsI GCAGTG 2 cut(s) 567, 691
BtsIMutI CAGTG 2 cut(s) 567, 691
BveI ACCTGC 1 cut(s) 1246
CfoI GCGC 1 cut(s) 516
Cfr13I GGNCC 3 cut(s) 16, 408, 1069
CseI GACGC 2 cut(s) 308, 890
CsiI ACCWGGT 1 cut(s) 18
Csp6I GTAC 2 cut(s) 378, 713
CviAII CATG 8 cut(s) 70, 100, 118, 277, 538, 627, 806, 860
CviQI GTAC 2 cut(s) 378, 713
DdeI CTNAG 4 cut(s) 256, 368, 583, 822
DpnI GATC 6 cut(s) 144, 231, 564, 729, 779, 1149
DpnII GATC 6 cut(s) 142, 229, 562, 727, 777, 1147
DraI TTTAAA 1 cut(s) 1272
DrdI GACNNNNNNGTC 1 cut(s) 482
DseDI GACNNNNNNGTC 1 cut(s) 482
Eam1104I CTCTTC 1 cut(s) 581
EarI CTCTTC 1 cut(s) 581
Eco105I TACGTA 1 cut(s) 956
Eco130I CCWWGG 3 cut(s) 618, 678, 1125
Eco32I GATATC 1 cut(s) 361
Eco47I GGWCC 3 cut(s) 16, 408, 1069
Eco57I CTGAAG 1 cut(s) 1265
EcoRII CCWGG 1 cut(s) 18
EcoRV GATATC 1 cut(s) 361
EcoT14I CCWWGG 3 cut(s) 618, 678, 1125
ErhI CCWWGG 3 cut(s) 618, 678, 1125
Esp3I CGTCTC 1 cut(s) 291
FaeI CATG 8 cut(s) 73, 103, 121, 280, 541, 630, 809, 863
FalI AAGNNNNNCTT 6 cut(s) 699, 731, 1193, 1225, 1205, 1237
FaqI GGGAC 1 cut(s) 648
FatI CATG 8 cut(s) 69, 99, 117, 276, 537, 626, 805, 859
FauNDI CATATG 1 cut(s) 1189
FbaI TGATCA 2 cut(s) 142, 562
FokI GGATG 2 cut(s) 1243, 1274
FspBI CTAG 4 cut(s) 294, 327, 1160, 1276
GlaI GCGC 1 cut(s) 515
GsuI CTGGAG 1 cut(s) 870
HapII CCGG 3 cut(s) 14, 406, 1002
HgaI GACGC 2 cut(s) 308, 890
HhaI GCGC 1 cut(s) 516
Hin1I GRCGYC 1 cut(s) 300
Hin1II CATG 8 cut(s) 73, 103, 121, 280, 541, 630, 809, 863
Hin6I GCGC 1 cut(s) 514
HinP1I GCGC 1 cut(s) 514
HincII GTYRAC 1 cut(s) 1081
HindII GTYRAC 1 cut(s) 1081
HindIII AAGCTT 1 cut(s) 1247
HinfI GANTC 5 cut(s) 649, 734, 923, 1217, 1256
HpaII CCGG 3 cut(s) 14, 406, 1002
HphI GGTGA 3 cut(s) 152, 991, 1125
Hpy166II GTNNAC 3 cut(s) 378, 953, 1081
Hpy188I TCNGA 7 cut(s) 41, 646, 757, 911, 1118, 1245, 1261
Hpy188III TCNNGA 7 cut(s) 233, 294, 337, 731, 1106, 1151, 1160
Hpy8I GTNNAC 3 cut(s) 378, 953, 1081
Hpy99I CGWCG 1 cut(s) 884
HpyAV CCTTC 6 cut(s) 89, 527, 534, 764, 1006, 1207
HpyCH4III ACNGT 3 cut(s) 382, 479, 553
HpyCH4IV ACGT 1 cut(s) 955
HpyCH4V TGCA 4 cut(s) 425, 696, 1059, 1225
HpyF10VI GCNNNNNNNGC 2 cut(s) 707, 1012
HpyF3I CTNAG 4 cut(s) 256, 368, 583, 822
HpySE526I ACGT 1 cut(s) 955
Hsp92I GRCGYC 1 cut(s) 300
Hsp92II CATG 8 cut(s) 73, 103, 121, 280, 541, 630, 809, 863
HspAI GCGC 1 cut(s) 514
Ksp22I TGATCA 2 cut(s) 142, 562
Kzo9I GATC 6 cut(s) 142, 229, 562, 727, 777, 1147
LmnI GCTCC 2 cut(s) 889, 949
LweI GCATC 2 cut(s) 619, 779
MabI ACCWGGT 1 cut(s) 18
MaeI CTAG 4 cut(s) 294, 327, 1160, 1276
MaeII ACGT 1 cut(s) 955
MaeIII GTNAC 1 cut(s) 46
MalI GATC 6 cut(s) 144, 231, 564, 729, 779, 1149
MboI GATC 6 cut(s) 142, 229, 562, 727, 777, 1147
MboII GAAGA 9 cut(s) 28, 99, 478, 512, 568, 571, 737, 995, 1121
MfeI CAATTG 1 cut(s) 1170
MflI RGATCY 2 cut(s) 727, 1147
MhlI GDGCHC 2 cut(s) 599, 823
MlyI GAGTC 3 cut(s) 932, 1211, 1265
MmeI TCCRAC 4 cut(s) 64, 336, 747, 1239
MnlI CCTC 7 cut(s) 127, 365, 905, 1003, 1082, 1084, 1191
MseI TTAA 6 cut(s) 546, 659, 687, 810, 867, 1271
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 3 cut(s) 14, 406, 1002
MspR9I CCNGG 2 cut(s) 20, 1003
MunI CAATTG 1 cut(s) 1170
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 2 cut(s) 707, 1012
NciI CCSGG 1 cut(s) 1003
NdeI CATATG 1 cut(s) 1189
NdeII GATC 6 cut(s) 142, 229, 562, 727, 777, 1147
NlaIII CATG 8 cut(s) 73, 103, 121, 280, 541, 630, 809, 863
NlaIV GGNNCC 1 cut(s) 1236
NspI RCATGY 2 cut(s) 103, 809
PaqCI CACCTGC 1 cut(s) 1246
PciI ACATGT 1 cut(s) 805
PcsI WCGNNNNNNNCGW 2 cut(s) 342, 961
PfeI GAWTC 2 cut(s) 649, 734
PflMI CCANNNNNTGG 1 cut(s) 90
PleI GAGTC 3 cut(s) 931, 1211, 1264
PpsI GAGTC 3 cut(s) 931, 1211, 1264
Ppu21I YACGTR 1 cut(s) 956
PscI ACATGT 1 cut(s) 805
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 1236
PspPI GGNCC 3 cut(s) 16, 408, 1069
PsuI RGATCY 2 cut(s) 727, 1147
RsaI GTAC 2 cut(s) 379, 714
RsaNI GTAC 2 cut(s) 378, 713
SaqAI TTAA 6 cut(s) 546, 659, 687, 810, 867, 1271
Sau3AI GATC 6 cut(s) 142, 229, 562, 727, 777, 1147
Sau96I GGNCC 3 cut(s) 16, 408, 1069
SchI GAGTC 3 cut(s) 932, 1211, 1265
ScrFI CCNGG 2 cut(s) 20, 1003
SduI GDGCHC 2 cut(s) 599, 823
SexAI ACCWGGT 1 cut(s) 18
SfaNI GCATC 2 cut(s) 619, 779
SinI GGWCC 3 cut(s) 16, 408, 1069
SmlI CTYRAG 1 cut(s) 705
SmoI CTYRAG 1 cut(s) 705
SnaBI TACGTA 1 cut(s) 956
SsiI CCGC 1 cut(s) 60
SspI AATATT 1 cut(s) 1140
SspMI CTAG 4 cut(s) 294, 327, 1160, 1276
StyD4I CCNGG 2 cut(s) 18, 1001
StyI CCWWGG 3 cut(s) 618, 678, 1125
TaaI ACNGT 3 cut(s) 382, 479, 553
TaiI ACGT 1 cut(s) 958
TaqI TCGA 7 cut(s) 232, 336, 486, 606, 723, 879, 1152
TatI WGTACW 1 cut(s) 712
TfiI GAWTC 2 cut(s) 649, 734
Tru1I TTAA 6 cut(s) 546, 659, 687, 810, 867, 1271
Tru9I TTAA 6 cut(s) 546, 659, 687, 810, 867, 1271
TscAI CASTG 2 cut(s) 574, 698
TspDTI ATGAA 5 cut(s) 178, 479, 592, 615, 741
TspGWI ACGGA 1 cut(s) 753
TspRI CASTG 2 cut(s) 574, 698
Van91I CCANNNNNTGG 1 cut(s) 90
VpaK11BI GGWCC 3 cut(s) 16, 408, 1069
XapI RAATTY 5 cut(s) 263, 445, 929, 1046, 1154
XbaI TCTAGA 2 cut(s) 293, 1159
XceI RCATGY 2 cut(s) 103, 809
XcmI CCANNNNNNNNNTGG 1 cut(s) 445
XspI CTAG 4 cut(s) 294, 327, 1160, 1276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.