Rmu_sc0011315.1_g000015

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011315.1
OG0000428
Physical Location & Seq
Forward (+)
44716 .. 45173
458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011315.1_g000015.1.cds

Sequence Viewer

Length: 458 bp
atggccggtcttcattcttcaatcgtctctgcatcagttatggctaccacaaagaaccccaattcagataaaaagccaacatggcaaaaccagaaaaaggaagatcatgatgaccaaatggcggccatggctgtggacacagtattaagccggcctcagttacctgaccacattatccaccaaatcatccaactccttcctaccaaatctgctgtccgcatgagctctctttccaagcaatttgaagctgcatggtacacccaacctgtactagacttcgatgagggcaagccacgcgatgatacaactgacagcaaccttcaacacataaagttcatcaacatcttggataggtatttgaactacttccgtaatgatgagaaaatcaagcagcaactcttagataaattcaggcttcgcatcactacaaacttctcagttagtgaatctactatggt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

153

Amino Acids

17.61

Weight (kDa)

6.97

Isoelectric Point (pI)

36.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 297
AciI CCGC 2 cut(s) 122, 217
AcoI YGGCCR 2 cut(s) 3, 123
AcsI RAATTY 1 cut(s) 407
AfaI GTAC 2 cut(s) 257, 270
AfiI CCNNNNNNNGG 2 cut(s) 97, 121
AgsI TTSAA 4 cut(s) 21, 245, 323, 361
AluBI AGCT 2 cut(s) 225, 248
AluI AGCT 2 cut(s) 225, 248
Alw21I GWGCWC 1 cut(s) 227
Alw26I GTCTC 1 cut(s) 31
AoxI GGCC 3 cut(s) 3, 123, 152
ApeKI GCWGC 2 cut(s) 248, 391
ApoI RAATTY 1 cut(s) 407
ArsI GACNNNNNNTTYG 2 cut(s) 198, 230
Asp700I GAANNNNTTC 1 cut(s) 365
BanII GRGCYC 1 cut(s) 227
BbsI GAAGAC 1 cut(s) 2
Bbv12I GWGCWC 1 cut(s) 227
BbvI GCAGC 2 cut(s) 235, 403
BcoDI GTCTC 1 cut(s) 31
BfaI CTAG 1 cut(s) 272
BglI GCCNNNNNGGC 1 cut(s) 82
BisI GCNGC 3 cut(s) 123, 249, 392
BlsI GCNGC 3 cut(s) 124, 250, 393
BmsI GCATC 2 cut(s) 41, 429
BpiI GAAGAC 1 cut(s) 2
BsaJI CCNNGG 1 cut(s) 126
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 121
Bse118I RCCGGY 2 cut(s) 5, 150
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 186
BseLI CCNNNNNNNGG 2 cut(s) 97, 121
BseMII CTCAG 2 cut(s) 170, 450
BseXI GCAGC 2 cut(s) 235, 403
Bsh1236I CGCG 1 cut(s) 297
BshFI GGCC 3 cut(s) 5, 125, 154
BsiHKAI GWGCWC 1 cut(s) 227
BsiSI CCGG 2 cut(s) 6, 151
BslI CCNNNNNNNGG 2 cut(s) 97, 121
BsmAI GTCTC 1 cut(s) 31
BsmBI CGTCTC 1 cut(s) 31
BsnI GGCC 3 cut(s) 5, 125, 154
Bsp1286I GDGCHC 1 cut(s) 227
Bsp143I GATC 1 cut(s) 103
Bsp19I CCATGG 1 cut(s) 126
BspACI CCGC 2 cut(s) 122, 217
BspANI GGCC 3 cut(s) 5, 125, 154
BspCNI CTCAG 2 cut(s) 169, 449
BspFNI CGCG 1 cut(s) 297
BspHI TCATGA 1 cut(s) 106
BsrFI RCCGGY 2 cut(s) 5, 150
BssAI RCCGGY 2 cut(s) 5, 150
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 1 cut(s) 103
BssT1I CCWWGG 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 142
BstC8I GCNNGC 2 cut(s) 152, 290
BstDEI CTNAG 3 cut(s) 156, 400, 436
BstDSI CCRYGG 1 cut(s) 126
BstF5I GGATG 1 cut(s) 186
BstFNI CGCG 1 cut(s) 297
BstKTI GATC 1 cut(s) 106
BstMAI GTCTC 1 cut(s) 31
BstMBI GATC 1 cut(s) 103
BstMWI GCNNNNNNNGC 3 cut(s) 82, 128, 294
BstUI CGCG 1 cut(s) 297
BstV1I GCAGC 2 cut(s) 235, 403
BstV2I GAAGAC 1 cut(s) 2
BstXI CCANNNNNNTGG 1 cut(s) 133
BsuRI GGCC 3 cut(s) 5, 125, 154
BtgI CCRYGG 1 cut(s) 126
BtgZI GCGATG 1 cut(s) 312
BtsCI GGATG 1 cut(s) 186
Cac8I GCNNGC 2 cut(s) 152, 290
CciI TCATGA 1 cut(s) 106
Cfr10I RCCGGY 2 cut(s) 5, 150
Csp6I GTAC 2 cut(s) 256, 269
CviAII CATG 5 cut(s) 81, 107, 127, 220, 252
CviQI GTAC 2 cut(s) 256, 269
DdeI CTNAG 3 cut(s) 156, 400, 436
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
EaeI YGGCCR 2 cut(s) 3, 123
Ecl136II GAGCTC 1 cut(s) 225
Eco130I CCWWGG 1 cut(s) 126
Eco24I GRGCYC 1 cut(s) 227
Eco53kI GAGCTC 1 cut(s) 225
EcoICRI GAGCTC 1 cut(s) 225
EcoT14I CCWWGG 1 cut(s) 126
EcoT38I GRGCYC 1 cut(s) 227
ErhI CCWWGG 1 cut(s) 126
Esp3I CGTCTC 1 cut(s) 31
FaeI CATG 5 cut(s) 84, 110, 130, 223, 255
FaiI YATR 8 cut(s) 41, 82, 108, 128, 221, 253, 329, 455
FatI CATG 5 cut(s) 80, 106, 126, 219, 251
Fnu4HI GCNGC 3 cut(s) 123, 249, 392
FokI GGATG 1 cut(s) 173
FriOI GRGCYC 1 cut(s) 227
Fsp4HI GCNGC 3 cut(s) 123, 249, 392
FspBI CTAG 1 cut(s) 272
GluI GCNGC 3 cut(s) 123, 249, 392
HaeIII GGCC 3 cut(s) 5, 125, 154
HapII CCGG 2 cut(s) 6, 151
Hin1II CATG 5 cut(s) 84, 110, 130, 223, 255
HinfI GANTC 1 cut(s) 446
HpaII CCGG 2 cut(s) 6, 151
Hpy166II GTNNAC 2 cut(s) 136, 258
Hpy188I TCNGA 1 cut(s) 67
Hpy188III TCNNGA 1 cut(s) 107
Hpy8I GTNNAC 2 cut(s) 136, 258
HpyAV CCTTC 2 cut(s) 206, 329
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4V TGCA 2 cut(s) 32, 251
HpyF10VI GCNNNNNNNGC 3 cut(s) 82, 128, 294
HpyF3I CTNAG 3 cut(s) 156, 400, 436
Hsp92II CATG 5 cut(s) 84, 110, 130, 223, 255
KroI GCCGGC 1 cut(s) 150
KroNI GCCGGC 1 cut(s) 152
Kzo9I GATC 1 cut(s) 103
LpnPI CCDG 6 cut(s) 19, 104, 164, 177, 279, 397
Lsp1109I GCAGC 2 cut(s) 235, 403
LweI GCATC 2 cut(s) 41, 429
MaeI CTAG 1 cut(s) 272
MaeIII GTNAC 1 cut(s) 159
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 2 cut(s) 9, 113
MhlI GDGCHC 1 cut(s) 227
MluCI AATT 3 cut(s) 61, 239, 407
MmeI TCCRAC 1 cut(s) 214
MnlI CCTC 2 cut(s) 165, 277
MroNI GCCGGC 1 cut(s) 150
MroXI GAANNNNTTC 1 cut(s) 365
MseI TTAA 1 cut(s) 146
MslI CAYNNNNRTG 1 cut(s) 131
MspI CCGG 2 cut(s) 6, 151
MvnI CGCG 1 cut(s) 297
MwoI GCNNNNNNNGC 3 cut(s) 82, 128, 294
NaeI GCCGGC 1 cut(s) 152
NcoI CCATGG 1 cut(s) 126
NdeII GATC 1 cut(s) 103
NgoMIV GCCGGC 1 cut(s) 150
NlaIII CATG 5 cut(s) 84, 110, 130, 223, 255
PagI TCATGA 1 cut(s) 106
PdiI GCCGGC 1 cut(s) 152
PdmI GAANNNNTTC 1 cut(s) 365
PfeI GAWTC 1 cut(s) 446
PkrI GCNGC 3 cut(s) 124, 250, 393
Psp124BI GAGCTC 1 cut(s) 227
RsaI GTAC 2 cut(s) 257, 270
RsaNI GTAC 2 cut(s) 256, 269
RseI CAYNNNNRTG 1 cut(s) 131
SacI GAGCTC 1 cut(s) 227
SaqAI TTAA 1 cut(s) 146
SatI GCNGC 3 cut(s) 123, 249, 392
Sau3AI GATC 1 cut(s) 103
SduI GDGCHC 1 cut(s) 227
SetI ASST 6 cut(s) 166, 227, 250, 268, 321, 356
SfaNI GCATC 2 cut(s) 41, 429
SmiMI CAYNNNNRTG 1 cut(s) 131
Sse9I AATT 3 cut(s) 61, 239, 407
SsiI CCGC 2 cut(s) 122, 217
SspMI CTAG 1 cut(s) 272
SstI GAGCTC 1 cut(s) 227
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 1 cut(s) 142
TaqI TCGA 1 cut(s) 279
TasI AATT 3 cut(s) 61, 239, 407
TatI WGTACW 1 cut(s) 268
TauI GCSGC 1 cut(s) 125
TfiI GAWTC 1 cut(s) 446
Tru1I TTAA 1 cut(s) 146
Tru9I TTAA 1 cut(s) 146
TseI GCWGC 2 cut(s) 248, 391
TspDTI ATGAA 1 cut(s) 325
TspGWI ACGGA 1 cut(s) 359
XapI RAATTY 1 cut(s) 407
XmnI GAANNNNTTC 1 cut(s) 365
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.