Rmu_co8281643.1_g000001

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8281643.1
OG0000428
Physical Location & Seq
Reverse (-)
1 .. 774
774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8281643.1_g000001.1.cds

Sequence Viewer

Length: 753 bp
atggtagatgagttattgagtcttgcagttcgaagaagcgtcaaagagttggacattagcattggaggtaaatatgcagccttatactgtttaaccccgaagaagcccctaaatttggcgaagtctataactaccttaagtttggagcatgtgacaattaatgaagatgaatctaatcctcatctaagcttcccgtccttgaaaacaatgtcgttaaaaaatctgcgattcagtcactccttgatatctaggtgcccttccatcgagactttgtcagtatcaaccagttctatgtgtgatggctggtcaacattcgtagtttcaaattccaatctcaaatccttggacatcacaaactgcgatttttttcaattagaagtgagaactacgaatctagaatcttttacctttgtttcggaggattacattaggctcatcagtttgtccaagtgcagaaacttgaaatctttaaacatcctcgcacaaaaactgcactacctttatatatctggatgcggacattctgtgaaggccacaatcgatagttccagtctagagtatgttcagtttactggttttttgaagtacaagctttccataaaagctctaaatttgtcaagggcaagaattactctttgtcacgaagagcagagcttcaacgagccatgggaacatttttcttcactgagagattttcttgaaagttttgcttcctgctaccaagaaataatcctacgtgttgatcatgctgag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

251

Amino Acids

28.46

Weight (kDa)

6.71

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 252
AciI CCGC 1 cut(s) 516
AcsI RAATTY 3 cut(s) 112, 325, 610
AfaI GTAC 1 cut(s) 587
AfiI CCNNNNNNNGG 1 cut(s) 115
AflII CTTAAG 1 cut(s) 136
AflIII ACRYGT 1 cut(s) 736
AgsI TTSAA 7 cut(s) 202, 324, 371, 463, 583, 658, 701
AluBI AGCT 4 cut(s) 189, 592, 605, 654
AluI AGCT 4 cut(s) 189, 592, 605, 654
Alw26I GTCTC 1 cut(s) 260
AoxI GGCC 1 cut(s) 531
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 3 cut(s) 112, 325, 610
AseI ATTAAT 1 cut(s) 159
AsuII TTCGAA 1 cut(s) 31
BaeGI GKGCMC 1 cut(s) 257
BanI GGYRCC 1 cut(s) 252
BbvI GCAGC 1 cut(s) 89
BccI CCATC 2 cut(s) 269, 293
BclI TGATCA 1 cut(s) 742
BcoDI GTCTC 1 cut(s) 260
BfaI CTAG 3 cut(s) 249, 395, 554
BfrI CTTAAG 1 cut(s) 136
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
BmiI GGNNCC 1 cut(s) 254
BmsI GCATC 1 cut(s) 503
Bpu14I TTCGAA 1 cut(s) 31
Bsa29I ATCGAT 1 cut(s) 540
BsaAI YACGTR 1 cut(s) 737
BsaJI CCNNGG 2 cut(s) 342, 665
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse1I ACTGG 3 cut(s) 285, 549, 577
BseCI ATCGAT 1 cut(s) 540
BseDI CCNNGG 2 cut(s) 342, 665
BseGI GGATG 2 cut(s) 474, 518
BseLI CCNNNNNNNGG 1 cut(s) 115
BseMII CTCAG 2 cut(s) 677, 741
BseNI ACTGG 3 cut(s) 285, 549, 577
BseSI GKGCMC 1 cut(s) 257
BseXI GCAGC 1 cut(s) 89
BsgI GTGCAG 2 cut(s) 472, 476
BshFI GGCC 1 cut(s) 533
BshNI GGYRCC 1 cut(s) 252
BshVI ATCGAT 1 cut(s) 540
BslI CCNNNNNNNGG 1 cut(s) 115
BsmAI GTCTC 1 cut(s) 260
BsnI GGCC 1 cut(s) 533
Bsp119I TTCGAA 1 cut(s) 31
Bsp1286I GDGCHC 1 cut(s) 257
Bsp143I GATC 1 cut(s) 742
Bsp19I CCATGG 1 cut(s) 665
BspACI CCGC 1 cut(s) 516
BspANI GGCC 1 cut(s) 533
BspCNI CTCAG 2 cut(s) 678, 742
BspDI ATCGAT 1 cut(s) 540
BspLI GGNNCC 1 cut(s) 254
BspQI GCTCTTC 1 cut(s) 639
BspT104I TTCGAA 1 cut(s) 31
BspT107I GGYRCC 1 cut(s) 252
BspTI CTTAAG 1 cut(s) 136
BsrI ACTGG 3 cut(s) 285, 549, 577
BssECI CCNNGG 2 cut(s) 342, 665
BssMI GATC 1 cut(s) 742
BssT1I CCWWGG 2 cut(s) 342, 665
Bst4CI ACNGT 1 cut(s) 89
Bst6I CTCTTC 1 cut(s) 639
BstAFI CTTAAG 1 cut(s) 136
BstBAI YACGTR 1 cut(s) 737
BstBI TTCGAA 1 cut(s) 31
BstDEI CTNAG 3 cut(s) 185, 686, 750
BstDSI CCRYGG 1 cut(s) 665
BstF5I GGATG 2 cut(s) 474, 518
BstKTI GATC 1 cut(s) 745
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 1 cut(s) 742
BstNSI RCATGY 1 cut(s) 152
BstSLI GKGCMC 1 cut(s) 257
BstV1I GCAGC 1 cut(s) 89
Bsu15I ATCGAT 1 cut(s) 540
BsuRI GGCC 1 cut(s) 533
BsuTUI ATCGAT 1 cut(s) 540
BtgI CCRYGG 1 cut(s) 665
BtsCI GGATG 2 cut(s) 474, 518
BtsIMutI CAGTG 1 cut(s) 683
ClaI ATCGAT 1 cut(s) 540
CseI GACGC 1 cut(s) 28
Csp6I GTAC 1 cut(s) 586
CviAII CATG 3 cut(s) 149, 666, 746
CviQI GTAC 1 cut(s) 586
DdeI CTNAG 3 cut(s) 185, 686, 750
DpnI GATC 1 cut(s) 744
DpnII GATC 1 cut(s) 742
DraI TTTAAA 1 cut(s) 471
Eam1104I CTCTTC 1 cut(s) 639
EarI CTCTTC 1 cut(s) 639
Eco130I CCWWGG 2 cut(s) 342, 665
Eco32I GATATC 1 cut(s) 246
EcoRV GATATC 1 cut(s) 246
EcoT14I CCWWGG 2 cut(s) 342, 665
ErhI CCWWGG 2 cut(s) 342, 665
FaeI CATG 3 cut(s) 152, 669, 749
FalI AAGNNNNNCTT 2 cut(s) 694, 726
FatI CATG 3 cut(s) 148, 665, 745
FbaI TGATCA 1 cut(s) 742
Fnu4HI GCNGC 1 cut(s) 78
FokI GGATG 2 cut(s) 461, 525
Fsp4HI GCNGC 1 cut(s) 78
FspBI CTAG 3 cut(s) 249, 395, 554
GluI GCNGC 1 cut(s) 78
HaeIII GGCC 1 cut(s) 533
HgaI GACGC 1 cut(s) 28
Hin1II CATG 3 cut(s) 152, 669, 749
HincII GTYRAC 1 cut(s) 309
HindII GTYRAC 1 cut(s) 309
HindIII AAGCTT 2 cut(s) 187, 590
HinfI GANTC 5 cut(s) 19, 170, 228, 391, 398
Hpy166II GTNNAC 2 cut(s) 309, 570
Hpy188I TCNGA 1 cut(s) 418
Hpy188III TCNNGA 6 cut(s) 265, 395, 510, 554, 641, 698
Hpy8I GTNNAC 2 cut(s) 309, 570
HpyAV CCTTC 2 cut(s) 267, 523
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4IV ACGT 1 cut(s) 736
HpyCH4V TGCA 4 cut(s) 26, 77, 453, 493
HpyF3I CTNAG 3 cut(s) 185, 686, 750
HpySE526I ACGT 1 cut(s) 736
Hsp92II CATG 3 cut(s) 152, 669, 749
Ksp22I TGATCA 1 cut(s) 742
Kzo9I GATC 1 cut(s) 742
LguI GCTCTTC 1 cut(s) 639
LmnI GCTCC 1 cut(s) 145
LpnPI CCDG 6 cut(s) 289, 298, 495, 558, 562, 727
Lsp1109I GCAGC 1 cut(s) 89
LweI GCATC 1 cut(s) 503
MaeI CTAG 3 cut(s) 249, 395, 554
MaeII ACGT 1 cut(s) 736
MaeIII GTNAC 3 cut(s) 151, 233, 638
MalI GATC 1 cut(s) 744
MboI GATC 1 cut(s) 742
MboII GAAGA 5 cut(s) 45, 112, 176, 656, 672
MhlI GDGCHC 1 cut(s) 257
MluCI AATT 6 cut(s) 112, 156, 325, 371, 610, 627
MlyI GAGTC 1 cut(s) 28
MmeI TCCRAC 1 cut(s) 30
MnlI CCTC 4 cut(s) 59, 189, 412, 488
MseI TTAA 5 cut(s) 92, 137, 159, 215, 470
MspCI CTTAAG 1 cut(s) 136
NcoI CCATGG 1 cut(s) 665
NdeII GATC 1 cut(s) 742
NlaIII CATG 3 cut(s) 152, 669, 749
NlaIV GGNNCC 1 cut(s) 254
NmuCI GTSAC 3 cut(s) 151, 233, 638
NspI RCATGY 1 cut(s) 152
NspV TTCGAA 1 cut(s) 31
PciSI GCTCTTC 1 cut(s) 639
PfeI GAWTC 4 cut(s) 170, 228, 391, 398
PflFI GACNNNGTC 1 cut(s) 271
PkrI GCNGC 1 cut(s) 79
PleI GAGTC 1 cut(s) 27
PpsI GAGTC 1 cut(s) 27
Ppu21I YACGTR 1 cut(s) 737
PshBI ATTAAT 1 cut(s) 159
PspN4I GGNNCC 1 cut(s) 254
PsyI GACNNNGTC 1 cut(s) 271
RsaI GTAC 1 cut(s) 587
RsaNI GTAC 1 cut(s) 586
SapI GCTCTTC 1 cut(s) 639
SaqAI TTAA 5 cut(s) 92, 137, 159, 215, 470
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 1 cut(s) 742
SchI GAGTC 1 cut(s) 28
SduI GDGCHC 1 cut(s) 257
SfaNI GCATC 1 cut(s) 503
SfuI TTCGAA 1 cut(s) 31
SmlI CTYRAG 1 cut(s) 136
SmoI CTYRAG 1 cut(s) 136
Sse9I AATT 6 cut(s) 112, 156, 325, 371, 610, 627
SsiI CCGC 1 cut(s) 516
SspMI CTAG 3 cut(s) 249, 395, 554
StyI CCWWGG 2 cut(s) 342, 665
TaaI ACNGT 1 cut(s) 89
TaiI ACGT 1 cut(s) 739
TaqI TCGA 3 cut(s) 31, 264, 540
TasI AATT 6 cut(s) 112, 156, 325, 371, 610, 627
TatI WGTACW 1 cut(s) 585
TfiI GAWTC 4 cut(s) 170, 228, 391, 398
Tru1I TTAA 5 cut(s) 92, 137, 159, 215, 470
Tru9I TTAA 5 cut(s) 92, 137, 159, 215, 470
TscAI CASTG 1 cut(s) 690
TseFI GTSAC 3 cut(s) 151, 233, 638
TseI GCWGC 1 cut(s) 77
Tsp45I GTSAC 3 cut(s) 151, 233, 638
TspDTI ATGAA 2 cut(s) 177, 183
TspRI CASTG 1 cut(s) 690
Tth111I GACNNNGTC 1 cut(s) 271
Vha464I CTTAAG 1 cut(s) 136
VspI ATTAAT 1 cut(s) 159
XapI RAATTY 3 cut(s) 112, 325, 610
XbaI TCTAGA 2 cut(s) 394, 553
XceI RCATGY 1 cut(s) 152
XspI CTAG 3 cut(s) 249, 395, 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.