Prupe.8G124700_v2.0.a1

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000428
Physical Location & Seq
Reverse (-)
14997042 .. 14999220
2179 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G124700.1

Sequence Viewer

Length: 1440 bp
ATGGCTACCAGAAAAATCCCAAATCACCCAAACACAAACAAGAATAATCTGAAGGGAAAGCAAAACTCCATGGCCACCGCCACAATACCTCACTTACCTGTCCTTGTAATCCACCACGTTCTCCAATTCCTTCCCACAAAACATGCCATCCGCATGAGCTCTCTTTGCAAGCAATGGGCAGGGCTGTGGTGTTCAGTCCCAGTACTAGATTTCGAAGAGGAGGAGGACATGCCACATGCAAAGTTCATCAATTTTGTGGACAGGTGTTTGGAAATTCATGAGAAATACGAGCACATAGACAAATTCCGGCTTCACATGAAGTTCTGTTTATTTGCAGACAGATACAAATTCAACAAGTGGTTGGCTTTTGCAGTTGAAAGAAGAGTCAAAGAGTTAGATATCAGCTTCAGCTATACACACCCGTTCCTTGACTTTGCGTTACTCTCGCCCCTTCATAATGCAAAGTCTATAACTAGTTTGAATTTGGAGAATGCGACCATAGAGAACGGGGGTGAACCTATAAGCCTGCCCTCATTGAAAACTCTGTCCCTAACAAGAGTGAGACTCCAAGTCTCGTCTGTGATCTCCTCATTGATTTCAGGCTGCCCTTGCATTCAGTATTTGTCCTTAACTTCATCTTCTTCCTCCGACTATTATGTAATATCCATGCAGACCCTTCTTGATGCAAAGTATTTAACCTCCTTGAATCTAGAGTTCGTCCTAATAACGGATGACAGTAATAATGATCCTCTTATAGGCCGCCTTCCCTGTTTGAAAACAGTGTCCCTCACAACTGTGAACATGCATTACGGGACTTTCGCCCAATTAATTTCAAGTAGCCCTTCCCTTGAGCATTTGTCAGTATCCATATTTTTCCCTCATTATAATATTTCACCTCATATTCTACCTTCCTCCAGTCTCAAATCCTTCGAAGTTGGAATTTTCAATTCAGACGTGGTTCAAGTCAGTGGAGCTGAGAGTCTTGAATCTTGTACCTTGGTTTTAGAATCTCCAAGGCAGATTAAGTGTATACGGTTGGATGGTTGCAAAAACTTGAAACATTTGAGCATTCGTGCTCCGCCGCTCCCAAACTTTACACTACAACTGCATGGTTGCAAACATCTTGTGAATGTCTCACTTGATATTCCAAAGTTGTATTTTACTAGAATCAGCTCCAATGTTGAATGGAGAAATTTTTATTCACTGGCATATTATCTTGAAAAATTTCAAAGTTTCGAGAATATATCACTATATATTGATGATGCTGAGGCTCTTATCTTCCCAAAAAATATGAGAAAGTTCTATGATCCACCATTACGTACTGTCAACACTCTTACAGTGTTCATCAGTTCTCCAAGAGGTGCAAAAGATTCTAAGTTGAGGCACTCTTTGTTTTGGTTGGGACCTAAGTCTCTATCAATAATATACTCTGACCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

480

Amino Acids

54.47

Weight (kDa)

8.62

Isoelectric Point (pI)

48.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 885
AccBSI CCGCTC 1 cut(s) 1084
AccI GTMKAC 1 cut(s) 1030
AciI CCGC 5 cut(s) 78, 151, 760, 1079, 1082
AclWI GGATC 2 cut(s) 740, 1301
AcoI YGGCCR 1 cut(s) 72
AcsI RAATTY 7 cut(s) 273, 302, 347, 481, 939, 1192, 1223
AcuI CTGAAG 2 cut(s) 71, 391
AfaI GTAC 3 cut(s) 204, 994, 1321
AfiI CCNNNNNNNGG 2 cut(s) 727, 755
AhdI GACNNNNNGTC 1 cut(s) 569
AhlI ACTAGT 1 cut(s) 473
AjiI CACGTC 1 cut(s) 955
AleI CACNNNNGTG 1 cut(s) 794
AluBI AGCT 5 cut(s) 159, 405, 411, 974, 1173
AluI AGCT 5 cut(s) 159, 405, 411, 974, 1173
Alw21I GWGCWC 3 cut(s) 161, 294, 1078
Alw26I GTCTC 5 cut(s) 556, 577, 923, 1138, 1416
AlwI GGATC 2 cut(s) 740, 1301
AoxI GGCC 2 cut(s) 72, 757
ApeKI GCWGC 1 cut(s) 603
ApoI RAATTY 7 cut(s) 273, 302, 347, 481, 939, 1192, 1223
AseI ATTAAT 1 cut(s) 827
Asp700I GAANNNNTTC 1 cut(s) 1224
AspS9I GGNCC 1 cut(s) 1403
AsuHPI GGTGA 3 cut(s) 17, 524, 885
AsuII TTCGAA 2 cut(s) 213, 930
AvaII GGWCC 1 cut(s) 1403
BalI TGGCCA 1 cut(s) 74
BanII GRGCYC 1 cut(s) 161
Bbv12I GWGCWC 3 cut(s) 161, 294, 1078
BbvCI CCTCAGC 1 cut(s) 1266
BbvI GCAGC 1 cut(s) 590
BccI CCATC 2 cut(s) 155, 1034
BciVI GTATCC 1 cut(s) 874
BcoDI GTCTC 5 cut(s) 556, 577, 923, 1138, 1416
BcuI ACTAGT 1 cut(s) 473
BfaI CTAG 5 cut(s) 206, 474, 710, 1164, 1438
BfuI GTATCC 1 cut(s) 874
BisI GCNGC 3 cut(s) 604, 760, 1082
BlsI GCNGC 3 cut(s) 605, 761, 1083
BmcAI AGTACT 1 cut(s) 204
Bme18I GGWCC 1 cut(s) 1403
BmeRI GACNNNNNGTC 1 cut(s) 569
BmgBI CACGTC 1 cut(s) 955
BmgT120I GGNCC 1 cut(s) 1403
BmiI GGNNCC 1 cut(s) 1404
BmrI ACTGGG 1 cut(s) 194
BmsI GCATC 2 cut(s) 673, 1252
BmuI ACTGGG 1 cut(s) 194
BoxI GACNNNNGTC 1 cut(s) 1408
BplI GAGNNNNNCTC 2 cut(s) 549, 581
BpmI CTGGAG 1 cut(s) 898
Bpu10I CCTNAGC 1 cut(s) 1266
Bpu14I TTCGAA 2 cut(s) 213, 930
BpuEI CTTGAG 1 cut(s) 869
BsaAI YACGTR 1 cut(s) 1319
BsaJI CCNNGG 3 cut(s) 69, 996, 1013
Bsc4I CCNNNNNNNGG 2 cut(s) 727, 755
Bse1I ACTGG 3 cut(s) 200, 915, 1209
Bse3DI GCAATG 1 cut(s) 179
BseDI CCNNGG 3 cut(s) 69, 996, 1013
BseGI GGATG 3 cut(s) 147, 736, 1045
BseLI CCNNNNNNNGG 2 cut(s) 727, 755
BseMI GCAATG 1 cut(s) 179
BseMII CTCAG 2 cut(s) 966, 1257
BseNI ACTGG 3 cut(s) 200, 915, 1209
BseRI GAGGAG 3 cut(s) 233, 236, 577
BseXI GCAGC 1 cut(s) 590
BshFI GGCC 2 cut(s) 74, 759
BsiHKAI GWGCWC 3 cut(s) 161, 294, 1078
BsiSI CCGG 1 cut(s) 307
BslFI GGGAC 5 cut(s) 182, 532, 769, 826, 1416
BslI CCNNNNNNNGG 2 cut(s) 727, 755
BsmAI GTCTC 5 cut(s) 556, 577, 923, 1138, 1416
BsmFI GGGAC 5 cut(s) 182, 532, 769, 826, 1416
BsmI GAATGC 3 cut(s) 496, 612, 1068
BsnI GGCC 2 cut(s) 74, 759
Bsp119I TTCGAA 2 cut(s) 213, 930
Bsp1286I GDGCHC 3 cut(s) 161, 294, 1078
Bsp143I GATC 3 cut(s) 582, 745, 1306
Bsp19I CCATGG 1 cut(s) 69
BspACI CCGC 5 cut(s) 78, 151, 760, 1079, 1082
BspANI GGCC 2 cut(s) 74, 759
BspCNI CTCAG 2 cut(s) 967, 1258
BspHI TCATGA 1 cut(s) 277
BspLI GGNNCC 1 cut(s) 1404
BspPI GGATC 2 cut(s) 740, 1301
BspT104I TTCGAA 2 cut(s) 213, 930
BsrBI CCGCTC 1 cut(s) 1084
BsrDI GCAATG 1 cut(s) 179
BsrI ACTGG 3 cut(s) 200, 915, 1209
BssECI CCNNGG 3 cut(s) 69, 996, 1013
BssMI GATC 3 cut(s) 582, 745, 1306
BssNAI GTATAC 1 cut(s) 1031
BssT1I CCWWGG 3 cut(s) 69, 996, 1013
Bst1107I GTATAC 1 cut(s) 1031
Bst4CI ACNGT 6 cut(s) 737, 781, 796, 1035, 1324, 1339
Bst6I CTCTTC 2 cut(s) 210, 376
BstBAI YACGTR 1 cut(s) 1319
BstBI TTCGAA 2 cut(s) 213, 930
BstC8I GCNNGC 2 cut(s) 170, 527
BstDEI CTNAG 4 cut(s) 975, 1266, 1374, 1407
BstDSI CCRYGG 1 cut(s) 69
BstENI CCTNNNNNAGG 1 cut(s) 753
BstF5I GGATG 3 cut(s) 147, 736, 1045
BstKTI GATC 3 cut(s) 585, 748, 1309
BstMAI GTCTC 5 cut(s) 556, 577, 923, 1138, 1416
BstMBI GATC 3 cut(s) 582, 745, 1306
BstMWI GCNNNNNNNGC 2 cut(s) 165, 609
BstNSI RCATGY 4 cut(s) 146, 232, 239, 805
BstPAI GACNNNNGTC 1 cut(s) 1408
BstSNI TACGTA 1 cut(s) 1319
BstV1I GCAGC 1 cut(s) 590
BstZ17I GTATAC 1 cut(s) 1031
BsuI GTATCC 1 cut(s) 874
BsuRI GGCC 2 cut(s) 74, 759
BtgI CCRYGG 1 cut(s) 69
BtrI CACGTC 1 cut(s) 955
BtsCI GGATG 3 cut(s) 147, 736, 1045
BtsIMutI CAGTG 4 cut(s) 786, 973, 1202, 1344
Cac8I GCNNGC 2 cut(s) 170, 527
CciI TCATGA 1 cut(s) 277
Cfr13I GGNCC 1 cut(s) 1403
Csp6I GTAC 3 cut(s) 203, 993, 1320
CviQI GTAC 3 cut(s) 203, 993, 1320
DdeI CTNAG 4 cut(s) 975, 1266, 1374, 1407
DpnI GATC 3 cut(s) 584, 747, 1308
DpnII GATC 3 cut(s) 582, 745, 1306
DriI GACNNNNNGTC 1 cut(s) 569
EaeI YGGCCR 1 cut(s) 72
Eam1104I CTCTTC 2 cut(s) 210, 376
Eam1105I GACNNNNNGTC 1 cut(s) 569
EarI CTCTTC 2 cut(s) 210, 376
EciI GGCGGA 1 cut(s) 1068
Ecl136II GAGCTC 1 cut(s) 159
Eco105I TACGTA 1 cut(s) 1319
Eco130I CCWWGG 3 cut(s) 69, 996, 1013
Eco24I GRGCYC 1 cut(s) 161
Eco32I GATATC 1 cut(s) 400
Eco47I GGWCC 1 cut(s) 1403
Eco53kI GAGCTC 1 cut(s) 159
Eco57I CTGAAG 2 cut(s) 71, 391
EcoICRI GAGCTC 1 cut(s) 159
EcoNI CCTNNNNNAGG 1 cut(s) 753
EcoO109I RGGNCCY 1 cut(s) 1403
EcoRV GATATC 1 cut(s) 400
EcoT14I CCWWGG 3 cut(s) 69, 996, 1013
EcoT22I ATGCAT 1 cut(s) 807
EcoT38I GRGCYC 1 cut(s) 161
ErhI CCWWGG 3 cut(s) 69, 996, 1013
FalI AAGNNNNNCTT 2 cut(s) 826, 858
FaqI GGGAC 5 cut(s) 182, 532, 769, 826, 1416
FblI GTMKAC 1 cut(s) 1030
Fnu4HI GCNGC 3 cut(s) 604, 760, 1082
FokI GGATG 3 cut(s) 134, 743, 1052
FriOI GRGCYC 1 cut(s) 161
Fsp4HI GCNGC 3 cut(s) 604, 760, 1082
FspBI CTAG 5 cut(s) 206, 474, 710, 1164, 1438
GluI GCNGC 3 cut(s) 604, 760, 1082
GsuI CTGGAG 1 cut(s) 898
HaeIII GGCC 2 cut(s) 74, 759
HapII CCGG 1 cut(s) 307
HincII GTYRAC 1 cut(s) 1327
HindII GTYRAC 1 cut(s) 1327
HinfI GANTC 8 cut(s) 384, 564, 706, 979, 986, 1007, 1167, 1370
HpaII CCGG 1 cut(s) 307
HphI GGTGA 3 cut(s) 17, 524, 885
Hpy166II GTNNAC 5 cut(s) 259, 515, 799, 1031, 1327
Hpy188I TCNGA 4 cut(s) 51, 649, 952, 1432
Hpy188III TCNNGA 6 cut(s) 278, 680, 710, 983, 1217, 1237
Hpy8I GTNNAC 5 cut(s) 259, 515, 799, 1031, 1327
HpyAV CCTTC 8 cut(s) 46, 140, 461, 686, 773, 852, 918, 937
HpyCH4III ACNGT 6 cut(s) 737, 781, 796, 1035, 1324, 1339
HpyCH4IV ACGT 3 cut(s) 117, 954, 1318
HpyF10VI GCNNNNNNNGC 2 cut(s) 165, 609
HpyF3I CTNAG 4 cut(s) 975, 1266, 1374, 1407
HpySE526I ACGT 3 cut(s) 117, 954, 1318
Kzo9I GATC 3 cut(s) 582, 745, 1306
LmnI GCTCC 4 cut(s) 971, 1081, 1089, 1178
Lsp1109I GCAGC 1 cut(s) 590
LweI GCATC 2 cut(s) 673, 1252
MaeI CTAG 5 cut(s) 206, 474, 710, 1164, 1438
MaeII ACGT 3 cut(s) 117, 954, 1318
MaeIII GTNAC 1 cut(s) 438
MalI GATC 3 cut(s) 584, 747, 1308
MbiI CCGCTC 1 cut(s) 1084
MboI GATC 3 cut(s) 582, 745, 1306
MboII GAAGA 5 cut(s) 227, 393, 630, 633, 1270
MhlI GDGCHC 3 cut(s) 161, 294, 1078
MlsI TGGCCA 1 cut(s) 74
MluNI TGGCCA 1 cut(s) 74
MlyI GAGTC 3 cut(s) 393, 558, 988
MmeI TCCRAC 3 cut(s) 672, 916, 1017
Mox20I TGGCCA 1 cut(s) 74
Mph1103I ATGCAT 1 cut(s) 807
MroXI GAANNNNTTC 1 cut(s) 1224
MscI TGGCCA 1 cut(s) 74
MseI TTAA 4 cut(s) 629, 695, 827, 1023
MslI CAYNNNNRTG 2 cut(s) 152, 794
Msp20I TGGCCA 1 cut(s) 74
MspI CCGG 1 cut(s) 307
Mva1269I GAATGC 3 cut(s) 496, 612, 1068
MwoI GCNNNNNNNGC 2 cut(s) 165, 609
NcoI CCATGG 1 cut(s) 69
NdeII GATC 3 cut(s) 582, 745, 1306
NlaIV GGNNCC 1 cut(s) 1404
NsiI ATGCAT 1 cut(s) 807
NspI RCATGY 4 cut(s) 146, 232, 239, 805
NspV TTCGAA 2 cut(s) 213, 930
OliI CACNNNNGTG 1 cut(s) 794
PagI TCATGA 1 cut(s) 277
PctI GAATGC 3 cut(s) 496, 612, 1068
PdmI GAANNNNTTC 1 cut(s) 1224
PfeI GAWTC 5 cut(s) 706, 986, 1007, 1167, 1370
PkrI GCNGC 3 cut(s) 605, 761, 1083
PleI GAGTC 3 cut(s) 392, 558, 987
PpsI GAGTC 3 cut(s) 392, 558, 987
Ppu21I YACGTR 1 cut(s) 1319
PpuMI RGGWCCY 1 cut(s) 1403
PshAI GACNNNNGTC 1 cut(s) 1408
PshBI ATTAAT 1 cut(s) 827
PsiI TTATAA 1 cut(s) 885
Psp124BI GAGCTC 1 cut(s) 161
Psp5II RGGWCCY 1 cut(s) 1403
PspN4I GGNNCC 1 cut(s) 1404
PspPI GGNCC 1 cut(s) 1403
PspPPI RGGWCCY 1 cut(s) 1403
PsrI GAACNNNNNNTAC 2 cut(s) 791, 823
RsaI GTAC 3 cut(s) 204, 994, 1321
RsaNI GTAC 3 cut(s) 203, 993, 1320
RseI CAYNNNNRTG 2 cut(s) 152, 794
SacI GAGCTC 1 cut(s) 161
SaqAI TTAA 4 cut(s) 629, 695, 827, 1023
SatI GCNGC 3 cut(s) 604, 760, 1082
Sau3AI GATC 3 cut(s) 582, 745, 1306
Sau96I GGNCC 1 cut(s) 1403
ScaI AGTACT 1 cut(s) 204
SchI GAGTC 3 cut(s) 393, 558, 988
SduI GDGCHC 3 cut(s) 161, 294, 1078
SfaNI GCATC 2 cut(s) 673, 1252
SfuI TTCGAA 2 cut(s) 213, 930
SinI GGWCC 1 cut(s) 1403
SmiMI CAYNNNNRTG 2 cut(s) 152, 794
SmlI CTYRAG 1 cut(s) 848
SmoI CTYRAG 1 cut(s) 848
SnaBI TACGTA 1 cut(s) 1319
SpeI ACTAGT 1 cut(s) 473
SsiI CCGC 5 cut(s) 78, 151, 760, 1079, 1082
SspI AATATT 1 cut(s) 889
SspMI CTAG 5 cut(s) 206, 474, 710, 1164, 1438
SstI GAGCTC 1 cut(s) 161
StyI CCWWGG 3 cut(s) 69, 996, 1013
TaaI ACNGT 6 cut(s) 737, 781, 796, 1035, 1324, 1339
TaiI ACGT 3 cut(s) 120, 957, 1321
TaqI TCGA 3 cut(s) 213, 930, 1236
TatI WGTACW 1 cut(s) 202
TauI GCSGC 2 cut(s) 762, 1084
TfiI GAWTC 5 cut(s) 706, 986, 1007, 1167, 1370
Tru1I TTAA 4 cut(s) 629, 695, 827, 1023
Tru9I TTAA 4 cut(s) 629, 695, 827, 1023
TscAI CASTG 4 cut(s) 786, 973, 1209, 1344
TseI GCWGC 1 cut(s) 603
TspDTI ATGAA 6 cut(s) 235, 266, 332, 443, 624, 1333
TspGWI ACGGA 1 cut(s) 743
TspRI CASTG 4 cut(s) 786, 973, 1209, 1344
VpaK11BI GGWCC 1 cut(s) 1403
VspI ATTAAT 1 cut(s) 827
XagI CCTNNNNNAGG 1 cut(s) 753
XapI RAATTY 7 cut(s) 273, 302, 347, 481, 939, 1192, 1223
XbaI TCTAGA 1 cut(s) 709
XceI RCATGY 4 cut(s) 146, 232, 239, 805
XmiI GTMKAC 1 cut(s) 1030
XmnI GAANNNNTTC 1 cut(s) 1224
XspI CTAG 5 cut(s) 206, 474, 710, 1164, 1438
ZrmI AGTACT 1 cut(s) 204
Zsp2I ATGCAT 1 cut(s) 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.