Rh6BG138900

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000428
Physical Location & Seq
Reverse (-)
22147166 .. 22149264
2099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG138900.1

Sequence Viewer

Length: 1170 bp
ATGAATAGCTCAGAGCAAGACAAAGCCAAGGAAGATCATAATGAAAATGTCATGGCTAATAGCACTTTACTGCCTCACTTACCTGACCTTGTTATGCACCAAATCATCTTACGACTTCCTACCAAACCTGCCATTCGCATGAGTTGTCTTTCCAAGCAATGGGAAGGTGTATGGTCTGCGCTCCGCATATTAGATTTTGACGAGCGCAATCAGCCACATGATGATAATGATGACGACAACAACTACAAACATTTAAAGTTCCTCAACATCTTGGCAAGGTATTTGGAATTCCGTCAGAAGGACAACCAGCAACCTCCCTTGGATAAATTCAGGCTTTCGATGAGATATCTAGATGCAGATGAAGATGCTATCATAGGAAAGTTATTGAGTAATTCATTTGAGAGAAATGTCAAGGACTTAGATATCAGCCTTAGAAGTAAACATCAGGAGGTTGAAAGCTACTATTGCTTACCCCGGACGGCCATTATTAATGCAAAATCTGTGACTATTCTAAATTTGGAGCACCTGAGGATAAAGGACATTGACAGTGTTGGACCTGAGCCTATGTTTCCCTCTTTGAAAACTTTGTCCCTTAAAACCGTGCAAGTGAGTGGCCAGGCTCTCTTCTACTTAATTTTGGGGTGCACTTCAGTTGAGCATTTGTCATTAACTTCATGCTCTTTTGACCCCCCGCTGCTTCATGTTTCGAGTTCTAGTCTCAAAACATTGGAAGTTGAGAATTGCTATGCCCAGCATATTCAAGTTGATGAAGCTATGAATCTTGAATCTTTCACATGTGTTTCAAAACTTTCTCTGTTTCTGGGTATGGTGTTGAACAAATCTTTTAAGCTGAGTTATGTCAAAATCCGTGCTCAACACTTGAAATACTTGGGTGTATTTGGATGCCATGATACTTTGAAGGCCAGAATCAATACTCCAAGTCTGGGTCATTTTGATTTTCAGGGTTATATAAAGTCTAGAGTTTGTTTGTCAGCTCCACATTTACTAATGGCCCGCATCATAATCGAGGACAAACAGTTTTCCACCTTCAACGGGCCATGGAAACATTTTTCTACTTTGAGAGACTTTCTCGAATCATTTGGTTGCTCCAAAACTATAACCCTCTCTATTTGTGATTTCAAGATTTTGCATATCTGCATCTATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box LRR_2

Protein Analysis

389

Amino Acids

44.57

Weight (kDa)

6.96

Isoelectric Point (pI)

41.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 24 - 62 9e-06 F-box domain
LRR_At1g61320_AtMIF1 PF23622 120 - 276 2.2e-09 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 129 - 301 4.5e-18 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 136
AccB7I CCANNNNNTGG 1 cut(s) 159
AciI CCGC 3 cut(s) 184, 692, 1015
AcoI YGGCCR 2 cut(s) 480, 613
AcsI RAATTY 3 cut(s) 287, 326, 514
AcuI CTGAAG 1 cut(s) 633
AfiI CCNNNNNNNGG 4 cut(s) 159, 298, 944, 1053
AflIII ACRYGT 1 cut(s) 794
AjnI CCWGG 1 cut(s) 615
AluBI AGCT 5 cut(s) 9, 459, 773, 850, 995
AluI AGCT 5 cut(s) 9, 459, 773, 850, 995
Alw21I GWGCWC 3 cut(s) 525, 647, 874
Alw26I GTCTC 2 cut(s) 722, 1077
Alw44I GTGCAC 1 cut(s) 643
AoxI GGCC 5 cut(s) 480, 613, 921, 1011, 1055
ApaLI GTGCAC 1 cut(s) 643
ApeKI GCWGC 1 cut(s) 694
ApoI RAATTY 3 cut(s) 287, 326, 514
AseI ATTAAT 1 cut(s) 489
AspLEI GCGC 2 cut(s) 181, 207
AspS9I GGNCC 3 cut(s) 554, 1012, 1055
AsuC2I CCSGG 1 cut(s) 475
AvaII GGWCC 1 cut(s) 554
AxyI CCTNAGG 1 cut(s) 527
BaeGI GKGCMC 1 cut(s) 647
BalI TGGCCA 1 cut(s) 615
Bbv12I GWGCWC 3 cut(s) 525, 647, 874
BbvI GCAGC 1 cut(s) 681
BceAI ACGGC 1 cut(s) 495
BcgI CGANNNNNNTGC 2 cut(s) 1006, 1040
BciT130I CCWGG 1 cut(s) 617
BcnI CCSGG 1 cut(s) 475
BcoDI GTCTC 2 cut(s) 722, 1077
BfaI CTAG 3 cut(s) 350, 714, 978
BfuAI ACCTGC 1 cut(s) 136
BisI GCNGC 1 cut(s) 695
BlsI GCNGC 1 cut(s) 696
Bme1390I CCNGG 2 cut(s) 475, 617
Bme18I GGWCC 1 cut(s) 554
BmgT120I GGNCC 3 cut(s) 554, 1012, 1055
BmrFI CCNGG 2 cut(s) 475, 617
BmsI GCATC 4 cut(s) 343, 355, 893, 1026
BplI GAGNNNNNCTC 2 cut(s) 1074, 1106
Bpu10I CCTNAGC 1 cut(s) 558
BpuMI CCSGG 1 cut(s) 475
BsaJI CCNNGG 4 cut(s) 27, 318, 473, 1058
Bsc4I CCNNNNNNNGG 4 cut(s) 159, 298, 944, 1053
Bse21I CCTNAGG 1 cut(s) 527
Bse3DI GCAATG 1 cut(s) 164
BseBI CCWGG 1 cut(s) 617
BseDI CCNNGG 4 cut(s) 27, 318, 473, 1058
BseGI GGATG 1 cut(s) 908
BseLI CCNNNNNNNGG 4 cut(s) 159, 298, 944, 1053
BseMI GCAATG 1 cut(s) 164
BseMII CTCAG 4 cut(s) 24, 518, 549, 842
BseSI GKGCMC 1 cut(s) 647
BseXI GCAGC 1 cut(s) 681
BseYI CCCAGC 1 cut(s) 750
BshFI GGCC 5 cut(s) 482, 615, 923, 1013, 1057
BsiHKAI GWGCWC 3 cut(s) 525, 647, 874
BsiSI CCGG 1 cut(s) 475
BslFI GGGAC 1 cut(s) 574
BslI CCNNNNNNNGG 4 cut(s) 159, 298, 944, 1053
BsmAI GTCTC 2 cut(s) 722, 1077
BsmFI GGGAC 1 cut(s) 574
BsnI GGCC 5 cut(s) 482, 615, 923, 1013, 1057
Bsp1286I GDGCHC 3 cut(s) 525, 647, 874
Bsp143I GATC 1 cut(s) 34
Bsp19I CCATGG 1 cut(s) 1058
BspACI CCGC 3 cut(s) 184, 692, 1015
BspANI GGCC 5 cut(s) 482, 615, 923, 1013, 1057
BspCNI CTCAG 4 cut(s) 23, 519, 550, 843
BspMI ACCTGC 1 cut(s) 136
BsrDI GCAATG 1 cut(s) 164
BssECI CCNNGG 4 cut(s) 27, 318, 473, 1058
BssMI GATC 1 cut(s) 34
BssT1I CCWWGG 3 cut(s) 27, 318, 1058
Bst2UI CCWGG 1 cut(s) 617
Bst4CI ACNGT 3 cut(s) 548, 601, 1038
Bst6I CTCTTC 1 cut(s) 629
BstC8I GCNNGC 1 cut(s) 1015
BstDEI CTNAG 6 cut(s) 10, 418, 431, 527, 558, 851
BstDSI CCRYGG 1 cut(s) 1058
BstF5I GGATG 1 cut(s) 908
BstHHI GCGC 2 cut(s) 181, 207
BstKTI GATC 1 cut(s) 37
BstMAI GTCTC 2 cut(s) 722, 1077
BstMBI GATC 1 cut(s) 34
BstMWI GCNNNNNNNGC 2 cut(s) 211, 465
BstNI CCWGG 1 cut(s) 617
BstNSI RCATGY 1 cut(s) 798
BstSCI CCNGG 2 cut(s) 473, 615
BstSLI GKGCMC 1 cut(s) 647
BstV1I GCAGC 1 cut(s) 681
Bsu36I CCTNAGG 1 cut(s) 527
BsuRI GGCC 5 cut(s) 482, 615, 923, 1013, 1057
BtgI CCRYGG 1 cut(s) 1058
BtsCI GGATG 1 cut(s) 908
BtsIMutI CAGTG 1 cut(s) 553
BveI ACCTGC 1 cut(s) 136
Cac8I GCNNGC 1 cut(s) 1015
CfoI GCGC 2 cut(s) 181, 207
Cfr13I GGNCC 3 cut(s) 554, 1012, 1055
CviAII CATG 9 cut(s) 52, 139, 218, 675, 701, 795, 908, 1059, 1167
DdeI CTNAG 6 cut(s) 10, 418, 431, 527, 558, 851
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
DraI TTTAAA 1 cut(s) 255
EaeI YGGCCR 2 cut(s) 480, 613
Eam1104I CTCTTC 1 cut(s) 629
EarI CTCTTC 1 cut(s) 629
Eco130I CCWWGG 3 cut(s) 27, 318, 1058
Eco32I GATATC 2 cut(s) 347, 424
Eco47I GGWCC 1 cut(s) 554
Eco57I CTGAAG 1 cut(s) 633
Eco81I CCTNAGG 1 cut(s) 527
EcoRI GAATTC 1 cut(s) 287
EcoRII CCWGG 1 cut(s) 615
EcoRV GATATC 2 cut(s) 347, 424
EcoT14I CCWWGG 3 cut(s) 27, 318, 1058
EcoT22I ATGCAT 1 cut(s) 1168
ErhI CCWWGG 3 cut(s) 27, 318, 1058
FaeI CATG 9 cut(s) 55, 142, 221, 678, 704, 798, 911, 1062, 1170
FaqI GGGAC 1 cut(s) 574
FatI CATG 9 cut(s) 51, 138, 217, 674, 700, 794, 907, 1058, 1166
FauI CCCGC 2 cut(s) 699, 1022
Fnu4HI GCNGC 1 cut(s) 695
FokI GGATG 1 cut(s) 915
Fsp4HI GCNGC 1 cut(s) 695
FspBI CTAG 3 cut(s) 350, 714, 978
GlaI GCGC 2 cut(s) 180, 206
GluI GCNGC 1 cut(s) 695
GsaI CCCAGC 1 cut(s) 754
HaeIII GGCC 5 cut(s) 482, 615, 923, 1013, 1057
HapII CCGG 1 cut(s) 475
HhaI GCGC 2 cut(s) 181, 207
Hin1II CATG 9 cut(s) 55, 142, 221, 678, 704, 798, 911, 1062, 1170
Hin6I GCGC 2 cut(s) 179, 205
HinP1I GCGC 2 cut(s) 179, 205
HinfI GANTC 4 cut(s) 778, 785, 927, 1094
HpaII CCGG 1 cut(s) 475
Hpy166II GTNNAC 2 cut(s) 440, 645
Hpy188I TCNGA 2 cut(s) 13, 297
Hpy188III TCNNGA 6 cut(s) 350, 446, 782, 978, 1091, 1141
Hpy8I GTNNAC 2 cut(s) 440, 645
HpyAV CCTTC 4 cut(s) 158, 292, 913, 1057
HpyCH4III ACNGT 3 cut(s) 548, 601, 1038
HpyCH4V TGCA 8 cut(s) 97, 356, 494, 604, 645, 1150, 1158, 1166
HpyF10VI GCNNNNNNNGC 2 cut(s) 211, 465
HpyF3I CTNAG 6 cut(s) 10, 418, 431, 527, 558, 851
Hsp92II CATG 9 cut(s) 55, 142, 221, 678, 704, 798, 911, 1062, 1170
HspAI GCGC 2 cut(s) 179, 205
Kzo9I GATC 1 cut(s) 34
LmnI GCTCC 4 cut(s) 186, 520, 1000, 1112
Lsp1109I GCAGC 1 cut(s) 681
LweI GCATC 4 cut(s) 343, 355, 893, 1026
MaeI CTAG 3 cut(s) 350, 714, 978
MaeIII GTNAC 1 cut(s) 502
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MboII GAAGA 3 cut(s) 44, 374, 616
MhlI GDGCHC 3 cut(s) 525, 647, 874
MlsI TGGCCA 1 cut(s) 615
MluCI AATT 6 cut(s) 287, 326, 391, 514, 633, 739
MluNI TGGCCA 1 cut(s) 615
MmeI TCCRAC 1 cut(s) 532
MnlI CCTC 8 cut(s) 84, 272, 324, 442, 522, 583, 1021, 1133
Mox20I TGGCCA 1 cut(s) 615
Mph1103I ATGCAT 1 cut(s) 1168
MscI TGGCCA 1 cut(s) 615
MseI TTAA 6 cut(s) 254, 489, 594, 632, 668, 846
MslI CAYNNNNRTG 1 cut(s) 137
Msp20I TGGCCA 1 cut(s) 615
MspA1I CMGCKG 1 cut(s) 694
MspI CCGG 1 cut(s) 475
MspR9I CCNGG 2 cut(s) 475, 617
MvaI CCWGG 1 cut(s) 617
MwoI GCNNNNNNNGC 2 cut(s) 211, 465
NciI CCSGG 1 cut(s) 475
NcoI CCATGG 1 cut(s) 1058
NdeII GATC 1 cut(s) 34
NlaIII CATG 9 cut(s) 55, 142, 221, 678, 704, 798, 911, 1062, 1170
NmuCI GTSAC 1 cut(s) 502
NsiI ATGCAT 1 cut(s) 1168
NspI RCATGY 1 cut(s) 798
PciI ACATGT 1 cut(s) 794
PfeI GAWTC 4 cut(s) 778, 785, 927, 1094
PflMI CCANNNNNTGG 1 cut(s) 159
PkrI GCNGC 1 cut(s) 696
PscI ACATGT 1 cut(s) 794
PshBI ATTAAT 1 cut(s) 489
Psp6I CCWGG 1 cut(s) 615
PspFI CCCAGC 1 cut(s) 750
PspGI CCWGG 1 cut(s) 615
PspPI GGNCC 3 cut(s) 554, 1012, 1055
RseI CAYNNNNRTG 1 cut(s) 137
SaqAI TTAA 6 cut(s) 254, 489, 594, 632, 668, 846
SatI GCNGC 1 cut(s) 695
Sau3AI GATC 1 cut(s) 34
Sau96I GGNCC 3 cut(s) 554, 1012, 1055
ScrFI CCNGG 2 cut(s) 475, 617
SduI GDGCHC 3 cut(s) 525, 647, 874
SfaNI GCATC 4 cut(s) 343, 355, 893, 1026
SinI GGWCC 1 cut(s) 554
SmiMI CAYNNNNRTG 1 cut(s) 137
Sse9I AATT 6 cut(s) 287, 326, 391, 514, 633, 739
SsiI CCGC 3 cut(s) 184, 692, 1015
SspMI CTAG 3 cut(s) 350, 714, 978
StyD4I CCNGG 2 cut(s) 473, 615
StyI CCWWGG 3 cut(s) 27, 318, 1058
TaaI ACNGT 3 cut(s) 548, 601, 1038
TaqI TCGA 4 cut(s) 338, 707, 1026, 1092
TasI AATT 6 cut(s) 287, 326, 391, 514, 633, 739
TfiI GAWTC 4 cut(s) 778, 785, 927, 1094
Tru1I TTAA 6 cut(s) 254, 489, 594, 632, 668, 846
Tru9I TTAA 6 cut(s) 254, 489, 594, 632, 668, 846
TscAI CASTG 1 cut(s) 553
TseFI GTSAC 1 cut(s) 502
TseI GCWGC 1 cut(s) 694
Tsp45I GTSAC 1 cut(s) 502
TspDTI ATGAA 8 cut(s) 17, 57, 375, 384, 663, 689, 783, 791
TspGWI ACGGA 2 cut(s) 281, 857
TspRI CASTG 1 cut(s) 553
Van91I CCANNNNNTGG 1 cut(s) 159
VneI GTGCAC 1 cut(s) 643
VpaK11BI GGWCC 1 cut(s) 554
VspI ATTAAT 1 cut(s) 489
XapI RAATTY 3 cut(s) 287, 326, 514
XbaI TCTAGA 2 cut(s) 349, 977
XceI RCATGY 1 cut(s) 798
XspI CTAG 3 cut(s) 350, 714, 978
Zsp2I ATGCAT 1 cut(s) 1168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.