Rmu_sc0006683.1_g000002

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006683.1
OG0000428
Physical Location & Seq
Reverse (-)
3714 .. 5235
1522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006683.1_g000002.1.cds

Sequence Viewer

Length: 1377 bp
atggccggtcttcattcttcaatcgtctctgcatcagttatggctaccacaaagaaccccaattcagataaaaagccaacatggcaaaaccagaaaaaggaagatcatgatgaccaaatggcggccatggctgtggacacagtattaagccggcctcagttacctgaccacattatccaccaaatcatccaactccttcctaccaaatctgctgtccgcatgagctctctttccaagcaatttgaagctgcatggtacacccaacctgtactagacttcgatgagggcaagccacgcgatgatacaactgacagcaaccttcaacacataaagttcatcaacatcttggataggtatttgaactacttccgtaatgctgagaaaatcaagcagcaactcttagataaattcaggcttcgcatcactacaaacttctcagttagtgaatctactatggtagatgagttattgagtcttgcagttcgaagaagcgtcaaagagttggacattagcattggaggtaaatatgcagccttatactgtttaaccccgaagaagcccctaaatttggcgaagtctataactaccttaagtttggagcatgtgacaattaatgaagatgaatctaatcctcatctaagcttcccgtccttgaaaacaatgtcgttaaaaaatctgcgattcagtcactccttgatatctaggtgcccttccatcgagactttgtcagtatcaaccagttctatgtgtgatggctggtcaacattcgtagtttcaaattccaatctcaaatccttggacatcacaaactgcgatttttttcaattagaagtgagaactacgaatctagaatcttttacctttgtttcggaggattacattaggctcatcagtttgtccaagtgcagaaacttgaaatctttaaacatcctcgcacaaaaactgcactacctttatatatctggatgcggacattctgtgaaggccacaatcgatagttccagtctagagtatgttcagtttactggttttttgaagtacaagctttccataaaagctctaaatttgtcaagggcaagaattactctttgtcacgaagagcagagcttcaacgagccatgggaacatttttcttcactgagagattttcttgaaagttttgcttcctgctaccaagaaataatcctacgtgttgatcatgctgagatggcgcaggctctcatctttccagaaaatttcaggaagaccgtctctccaccattgcctattcttaagcatttacgggttcgcatcacttctccgatgttggcgcgaaattctgacttgatggactcattgacttggatagcaccttctgcagagattcacagaatataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

458

Amino Acids

52.15

Weight (kDa)

8.3

Isoelectric Point (pI)

43.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 705
AccII CGCG 2 cut(s) 297, 1312
AciI CCGC 3 cut(s) 122, 217, 969
AcoI YGGCCR 2 cut(s) 3, 123
AcsI RAATTY 6 cut(s) 407, 565, 778, 1063, 1234, 1315
AfaI GTAC 3 cut(s) 257, 270, 1040
AfiI CCNNNNNNNGG 3 cut(s) 97, 121, 568
AflII CTTAAG 2 cut(s) 589, 1271
AflIII ACRYGT 1 cut(s) 1189
AluBI AGCT 6 cut(s) 225, 248, 642, 1045, 1058, 1107
AluI AGCT 6 cut(s) 225, 248, 642, 1045, 1058, 1107
Alw21I GWGCWC 1 cut(s) 227
Alw26I GTCTC 3 cut(s) 31, 713, 1255
AoxI GGCC 4 cut(s) 3, 123, 152, 984
ApeKI GCWGC 3 cut(s) 248, 391, 530
ApoI RAATTY 6 cut(s) 407, 565, 778, 1063, 1234, 1315
ArsI GACNNNNNNTTYG 2 cut(s) 198, 230
AseI ATTAAT 1 cut(s) 612
Asp700I GAANNNNTTC 1 cut(s) 365
AspLEI GCGC 2 cut(s) 1213, 1312
AsuII TTCGAA 1 cut(s) 484
BaeGI GKGCMC 1 cut(s) 710
BanI GGYRCC 1 cut(s) 705
BanII GRGCYC 1 cut(s) 227
BbsI GAAGAC 2 cut(s) 2, 1250
Bbv12I GWGCWC 1 cut(s) 227
BbvI GCAGC 3 cut(s) 235, 403, 542
BccI CCATC 4 cut(s) 722, 746, 1201, 1321
BclI TGATCA 1 cut(s) 1195
BcoDI GTCTC 3 cut(s) 31, 713, 1255
BfaI CTAG 4 cut(s) 272, 702, 848, 1007
BfmI CTRYAG 1 cut(s) 1356
BfrI CTTAAG 2 cut(s) 589, 1271
BglI GCCNNNNNGGC 1 cut(s) 82
BisI GCNGC 4 cut(s) 123, 249, 392, 531
BlsI GCNGC 4 cut(s) 124, 250, 393, 532
BmiI GGNNCC 1 cut(s) 707
BmsI GCATC 4 cut(s) 41, 429, 956, 1299
BpiI GAAGAC 2 cut(s) 2, 1250
Bpu14I TTCGAA 1 cut(s) 484
Bsa29I ATCGAT 1 cut(s) 993
BsaAI YACGTR 1 cut(s) 1190
BsaJI CCNNGG 3 cut(s) 126, 795, 1118
BsaXI ACNNNNNCTCC 2 cut(s) 1237, 1267
Bsc4I CCNNNNNNNGG 3 cut(s) 97, 121, 568
Bse118I RCCGGY 2 cut(s) 5, 150
Bse1I ACTGG 3 cut(s) 738, 1002, 1030
Bse3DI GCAATG 1 cut(s) 1259
BseCI ATCGAT 1 cut(s) 993
BseDI CCNNGG 3 cut(s) 126, 795, 1118
BseGI GGATG 3 cut(s) 186, 927, 971
BseLI CCNNNNNNNGG 3 cut(s) 97, 121, 568
BseMI GCAATG 1 cut(s) 1259
BseMII CTCAG 5 cut(s) 170, 369, 450, 1130, 1194
BseNI ACTGG 3 cut(s) 738, 1002, 1030
BseSI GKGCMC 1 cut(s) 710
BseXI GCAGC 3 cut(s) 235, 403, 542
BsgI GTGCAG 2 cut(s) 925, 929
Bsh1236I CGCG 2 cut(s) 297, 1312
BshFI GGCC 4 cut(s) 5, 125, 154, 986
BshNI GGYRCC 1 cut(s) 705
BshVI ATCGAT 1 cut(s) 993
BsiHKAI GWGCWC 1 cut(s) 227
BsiSI CCGG 2 cut(s) 6, 151
BslI CCNNNNNNNGG 3 cut(s) 97, 121, 568
BsmAI GTCTC 3 cut(s) 31, 713, 1255
BsmBI CGTCTC 2 cut(s) 31, 1255
BsnI GGCC 4 cut(s) 5, 125, 154, 986
Bsp119I TTCGAA 1 cut(s) 484
Bsp1286I GDGCHC 2 cut(s) 227, 710
Bsp143I GATC 2 cut(s) 103, 1195
Bsp19I CCATGG 2 cut(s) 126, 1118
BspACI CCGC 3 cut(s) 122, 217, 969
BspANI GGCC 4 cut(s) 5, 125, 154, 986
BspCNI CTCAG 5 cut(s) 169, 370, 449, 1131, 1195
BspDI ATCGAT 1 cut(s) 993
BspFNI CGCG 2 cut(s) 297, 1312
BspHI TCATGA 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 707
BspMAI CTGCAG 1 cut(s) 1360
BspQI GCTCTTC 1 cut(s) 1092
BspT104I TTCGAA 1 cut(s) 484
BspT107I GGYRCC 1 cut(s) 705
BspTI CTTAAG 2 cut(s) 589, 1271
BsrDI GCAATG 1 cut(s) 1259
BsrFI RCCGGY 2 cut(s) 5, 150
BsrI ACTGG 3 cut(s) 738, 1002, 1030
BssAI RCCGGY 2 cut(s) 5, 150
BssECI CCNNGG 3 cut(s) 126, 795, 1118
BssMI GATC 2 cut(s) 103, 1195
BssT1I CCWWGG 3 cut(s) 126, 795, 1118
Bst4CI ACNGT 3 cut(s) 142, 542, 1249
Bst6I CTCTTC 1 cut(s) 1092
BstAFI CTTAAG 2 cut(s) 589, 1271
BstAPI GCANNNNNTGC 1 cut(s) 1355
BstBAI YACGTR 1 cut(s) 1190
BstBI TTCGAA 1 cut(s) 484
BstC8I GCNNGC 3 cut(s) 152, 290, 1215
BstDEI CTNAG 7 cut(s) 156, 378, 400, 436, 638, 1139, 1203
BstDSI CCRYGG 2 cut(s) 126, 1118
BstF5I GGATG 3 cut(s) 186, 927, 971
BstFNI CGCG 2 cut(s) 297, 1312
BstHHI GCGC 2 cut(s) 1213, 1312
BstKTI GATC 2 cut(s) 106, 1198
BstMAI GTCTC 3 cut(s) 31, 713, 1255
BstMBI GATC 2 cut(s) 103, 1195
BstMWI GCNNNNNNNGC 5 cut(s) 82, 128, 294, 1208, 1355
BstNSI RCATGY 1 cut(s) 605
BstSFI CTRYAG 1 cut(s) 1356
BstSLI GKGCMC 1 cut(s) 710
BstUI CGCG 2 cut(s) 297, 1312
BstV1I GCAGC 3 cut(s) 235, 403, 542
BstV2I GAAGAC 2 cut(s) 2, 1250
BstXI CCANNNNNNTGG 1 cut(s) 133
Bsu15I ATCGAT 1 cut(s) 993
BsuRI GGCC 4 cut(s) 5, 125, 154, 986
BsuTUI ATCGAT 1 cut(s) 993
BtgI CCRYGG 2 cut(s) 126, 1118
BtgZI GCGATG 1 cut(s) 312
BtsCI GGATG 3 cut(s) 186, 927, 971
BtsIMutI CAGTG 1 cut(s) 1136
Cac8I GCNNGC 3 cut(s) 152, 290, 1215
CciI TCATGA 1 cut(s) 106
CfoI GCGC 2 cut(s) 1213, 1312
Cfr10I RCCGGY 2 cut(s) 5, 150
ClaI ATCGAT 1 cut(s) 993
CseI GACGC 1 cut(s) 481
Csp6I GTAC 3 cut(s) 256, 269, 1039
CviAII CATG 8 cut(s) 81, 107, 127, 220, 252, 602, 1119, 1199
CviQI GTAC 3 cut(s) 256, 269, 1039
DdeI CTNAG 7 cut(s) 156, 378, 400, 436, 638, 1139, 1203
DpnI GATC 2 cut(s) 105, 1197
DpnII GATC 2 cut(s) 103, 1195
DraI TTTAAA 1 cut(s) 924
EaeI YGGCCR 2 cut(s) 3, 123
Eam1104I CTCTTC 1 cut(s) 1092
EarI CTCTTC 1 cut(s) 1092
Ecl136II GAGCTC 1 cut(s) 225
Eco130I CCWWGG 3 cut(s) 126, 795, 1118
Eco24I GRGCYC 1 cut(s) 227
Eco32I GATATC 1 cut(s) 699
Eco53kI GAGCTC 1 cut(s) 225
EcoICRI GAGCTC 1 cut(s) 225
EcoRV GATATC 1 cut(s) 699
EcoT14I CCWWGG 3 cut(s) 126, 795, 1118
EcoT38I GRGCYC 1 cut(s) 227
ErhI CCWWGG 3 cut(s) 126, 795, 1118
Esp3I CGTCTC 2 cut(s) 31, 1255
FaeI CATG 8 cut(s) 84, 110, 130, 223, 255, 605, 1122, 1202
FalI AAGNNNNNCTT 2 cut(s) 1147, 1179
FatI CATG 8 cut(s) 80, 106, 126, 219, 251, 601, 1118, 1198
FbaI TGATCA 1 cut(s) 1195
Fnu4HI GCNGC 4 cut(s) 123, 249, 392, 531
FokI GGATG 3 cut(s) 173, 914, 978
FriOI GRGCYC 1 cut(s) 227
Fsp4HI GCNGC 4 cut(s) 123, 249, 392, 531
FspBI CTAG 4 cut(s) 272, 702, 848, 1007
GlaI GCGC 2 cut(s) 1212, 1311
GluI GCNGC 4 cut(s) 123, 249, 392, 531
HaeIII GGCC 4 cut(s) 5, 125, 154, 986
HapII CCGG 2 cut(s) 6, 151
HgaI GACGC 1 cut(s) 481
HhaI GCGC 2 cut(s) 1213, 1312
Hin1II CATG 8 cut(s) 84, 110, 130, 223, 255, 605, 1122, 1202
Hin6I GCGC 2 cut(s) 1211, 1310
HinP1I GCGC 2 cut(s) 1211, 1310
HincII GTYRAC 1 cut(s) 762
HindII GTYRAC 1 cut(s) 762
HindIII AAGCTT 2 cut(s) 640, 1043
HinfI GANTC 8 cut(s) 446, 472, 623, 681, 844, 851, 1331, 1363
HpaII CCGG 2 cut(s) 6, 151
Hpy166II GTNNAC 4 cut(s) 136, 258, 762, 1023
Hpy188I TCNGA 4 cut(s) 67, 871, 1302, 1321
Hpy188III TCNNGA 9 cut(s) 107, 718, 848, 963, 1007, 1094, 1151, 1229, 1240
Hpy8I GTNNAC 4 cut(s) 136, 258, 762, 1023
HpyAV CCTTC 5 cut(s) 206, 329, 720, 976, 1362
HpyCH4III ACNGT 3 cut(s) 142, 542, 1249
HpyCH4IV ACGT 1 cut(s) 1189
HpyCH4V TGCA 7 cut(s) 32, 251, 479, 530, 906, 946, 1358
HpyF10VI GCNNNNNNNGC 5 cut(s) 82, 128, 294, 1208, 1355
HpyF3I CTNAG 7 cut(s) 156, 378, 400, 436, 638, 1139, 1203
HpySE526I ACGT 1 cut(s) 1189
Hsp92II CATG 8 cut(s) 84, 110, 130, 223, 255, 605, 1122, 1202
HspAI GCGC 2 cut(s) 1211, 1310
KroI GCCGGC 1 cut(s) 150
KroNI GCCGGC 1 cut(s) 152
Ksp22I TGATCA 1 cut(s) 1195
Kzo9I GATC 2 cut(s) 103, 1195
LguI GCTCTTC 1 cut(s) 1092
LmnI GCTCC 1 cut(s) 598
Lsp1109I GCAGC 3 cut(s) 235, 403, 542
LweI GCATC 4 cut(s) 41, 429, 956, 1299
MaeI CTAG 4 cut(s) 272, 702, 848, 1007
MaeII ACGT 1 cut(s) 1189
MaeIII GTNAC 4 cut(s) 159, 604, 686, 1091
MalI GATC 2 cut(s) 105, 1197
MboI GATC 2 cut(s) 103, 1195
MboII GAAGA 8 cut(s) 9, 113, 498, 565, 629, 1109, 1125, 1255
MhlI GDGCHC 2 cut(s) 227, 710
MlyI GAGTC 2 cut(s) 481, 1325
MmeI TCCRAC 2 cut(s) 214, 483
MnlI CCTC 6 cut(s) 165, 277, 512, 642, 865, 941
MroNI GCCGGC 1 cut(s) 150
MroXI GAANNNNTTC 1 cut(s) 365
MseI TTAA 7 cut(s) 146, 545, 590, 612, 668, 923, 1272
MslI CAYNNNNRTG 1 cut(s) 131
MspCI CTTAAG 2 cut(s) 589, 1271
MspI CCGG 2 cut(s) 6, 151
MvnI CGCG 2 cut(s) 297, 1312
MwoI GCNNNNNNNGC 5 cut(s) 82, 128, 294, 1208, 1355
NaeI GCCGGC 1 cut(s) 152
NcoI CCATGG 2 cut(s) 126, 1118
NdeII GATC 2 cut(s) 103, 1195
NgoMIV GCCGGC 1 cut(s) 150
NlaIII CATG 8 cut(s) 84, 110, 130, 223, 255, 605, 1122, 1202
NlaIV GGNNCC 1 cut(s) 707
NmuCI GTSAC 3 cut(s) 604, 686, 1091
NspI RCATGY 1 cut(s) 605
NspV TTCGAA 1 cut(s) 484
PagI TCATGA 1 cut(s) 106
PciSI GCTCTTC 1 cut(s) 1092
PdiI GCCGGC 1 cut(s) 152
PdmI GAANNNNTTC 1 cut(s) 365
PfeI GAWTC 6 cut(s) 446, 623, 681, 844, 851, 1363
PflFI GACNNNGTC 1 cut(s) 724
PkrI GCNGC 4 cut(s) 124, 250, 393, 532
PleI GAGTC 2 cut(s) 480, 1325
PpsI GAGTC 2 cut(s) 480, 1325
Ppu21I YACGTR 1 cut(s) 1190
PshBI ATTAAT 1 cut(s) 612
Psp124BI GAGCTC 1 cut(s) 227
PspN4I GGNNCC 1 cut(s) 707
PstI CTGCAG 1 cut(s) 1360
PsyI GACNNNGTC 1 cut(s) 724
RsaI GTAC 3 cut(s) 257, 270, 1040
RsaNI GTAC 3 cut(s) 256, 269, 1039
RseI CAYNNNNRTG 1 cut(s) 131
SacI GAGCTC 1 cut(s) 227
SapI GCTCTTC 1 cut(s) 1092
SaqAI TTAA 7 cut(s) 146, 545, 590, 612, 668, 923, 1272
SatI GCNGC 4 cut(s) 123, 249, 392, 531
Sau3AI GATC 2 cut(s) 103, 1195
SchI GAGTC 2 cut(s) 481, 1325
SduI GDGCHC 2 cut(s) 227, 710
SfaNI GCATC 4 cut(s) 41, 429, 956, 1299
SfcI CTRYAG 1 cut(s) 1356
SfuI TTCGAA 1 cut(s) 484
SmiMI CAYNNNNRTG 1 cut(s) 131
SmlI CTYRAG 2 cut(s) 589, 1271
SmoI CTYRAG 2 cut(s) 589, 1271
SsiI CCGC 3 cut(s) 122, 217, 969
SspMI CTAG 4 cut(s) 272, 702, 848, 1007
SstI GAGCTC 1 cut(s) 227
StyI CCWWGG 3 cut(s) 126, 795, 1118
TaaI ACNGT 3 cut(s) 142, 542, 1249
TaiI ACGT 1 cut(s) 1192
TaqI TCGA 4 cut(s) 279, 484, 717, 993
TatI WGTACW 2 cut(s) 268, 1038
TauI GCSGC 1 cut(s) 125
TfiI GAWTC 6 cut(s) 446, 623, 681, 844, 851, 1363
Tru1I TTAA 7 cut(s) 146, 545, 590, 612, 668, 923, 1272
Tru9I TTAA 7 cut(s) 146, 545, 590, 612, 668, 923, 1272
TscAI CASTG 1 cut(s) 1143
TseFI GTSAC 3 cut(s) 604, 686, 1091
TseI GCWGC 3 cut(s) 248, 391, 530
Tsp45I GTSAC 3 cut(s) 604, 686, 1091
TspDTI ATGAA 3 cut(s) 325, 630, 636
TspGWI ACGGA 1 cut(s) 359
TspRI CASTG 1 cut(s) 1143
Tth111I GACNNNGTC 1 cut(s) 724
Vha464I CTTAAG 2 cut(s) 589, 1271
VspI ATTAAT 1 cut(s) 612
XapI RAATTY 6 cut(s) 407, 565, 778, 1063, 1234, 1315
XbaI TCTAGA 2 cut(s) 847, 1006
XceI RCATGY 1 cut(s) 605
XmnI GAANNNNTTC 1 cut(s) 365
XspI CTAG 4 cut(s) 272, 702, 848, 1007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.