FvH4_1g22376

Belongs to the RNase T2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000633
Physical Location & Seq
Reverse (-)
14295023 .. 14295802
780 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g22376.t1

Sequence Viewer

Length: 780 bp
ATGCACGATCTCACGCAAGAAGAAGTAGAGGATATGGTTGAAACGCTGAAGGCGGACGTGGCGCATTTGGAAAGTGAGAGAACACGGGACCGCCTAGAGGCGGCAGTCCGGGAGAAAAAATTGGAGCGAGACAACGCCACTATAATGAGCGCGCTGGCCCGAAGATTGGAAAGTGACGAGGCGATCGAGCGGGCAGCGGCCGCACTCCAAGAGCAACATACGGAGGGTCGAGGGTCTCCCATGACGCCGCTGGCAACCCGTAGAACGGTCCATGTCGGGGCTAATCTGTTCCCAGAAAGCATGGAAAGGGAAGGCCTGCCACCTCTCCCAACCTCTATCGACGGAAGGATTAAAGAGCCAACGGGGGTAGAGGCGGCCTTGAAGGCCATGCGAGATAGTGTTGAAAATCTGACAACGAGAGTAAATGAAGCGGAAAGGAGAGCGGCACACAACACGCCCGGTATGAGATTCGAGGAAAGGGGGGGACCATTCACGAACATCATCATGCAGACGTTGCGCTGCCACGTAGCTAAACCGCTGAAACTGAGCTACGGGGGGGAAGGGGACCCCCACCTCTTCCTCGATAGTTTCAAGTCCCACACCAACGCGAAGGGTTACACGGACGCCATGTGTTGCAACATGTTCCAGGAGACGTTGATAGGAGAATCACTCAGCTGGTTTTACGAACTCCCGGCCGGGTCGATAGACAGATTCAAGCAGCTGGCAGACAGGTTTGTCAACCGCTTCATATTGCGAACGGACGGGCAGAGCACCGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribonuclease_T2

Protein Analysis

260

Amino Acids

29.06

Weight (kDa)

5.58

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 734
AccBSI CCGCTC 2 cut(s) 190, 443
AccII CGCG 2 cut(s) 152, 608
AcoI YGGCCR 2 cut(s) 198, 693
AcuI CTGAAG 1 cut(s) 68
AcyI GRCGYC 2 cut(s) 245, 624
AfiI CCNNNNNNNGG 5 cut(s) 97, 100, 166, 265, 277
AflIII ACRYGT 1 cut(s) 639
AgsI TTSAA 5 cut(s) 41, 382, 404, 592, 715
AjiI CACGTC 1 cut(s) 58
AjnI CCWGG 1 cut(s) 645
AluBI AGCT 4 cut(s) 530, 549, 675, 721
AluI AGCT 4 cut(s) 530, 549, 675, 721
Alw21I GWGCWC 1 cut(s) 773
Alw26I GTCTC 3 cut(s) 123, 240, 644
AoxI GGCC 6 cut(s) 156, 198, 313, 375, 384, 693
ApeKI GCWGC 3 cut(s) 194, 519, 718
AspLEI GCGC 4 cut(s) 64, 152, 154, 519
AspS9I GGNCC 5 cut(s) 88, 157, 268, 485, 565
AsuC2I CCSGG 4 cut(s) 110, 459, 692, 697
AvaII GGWCC 4 cut(s) 88, 268, 485, 565
Bbv12I GWGCWC 1 cut(s) 773
BbvI GCAGC 3 cut(s) 206, 506, 730
BciT130I CCWGG 1 cut(s) 647
BcnI CCSGG 4 cut(s) 110, 459, 692, 697
BcoDI GTCTC 3 cut(s) 123, 240, 644
BfaI CTAG 2 cut(s) 95, 778
BglI GCCNNNNNGGC 1 cut(s) 383
BisI GCNGC 9 cut(s) 102, 195, 198, 201, 248, 375, 444, 520, 719
BlsI GCNGC 9 cut(s) 103, 196, 199, 202, 249, 376, 445, 521, 720
Bme1390I CCNGG 5 cut(s) 110, 459, 647, 692, 697
Bme18I GGWCC 4 cut(s) 88, 268, 485, 565
BmgBI CACGTC 1 cut(s) 58
BmgT120I GGNCC 5 cut(s) 88, 157, 268, 485, 565
BmiI GGNNCC 4 cut(s) 89, 486, 566, 567
BmrFI CCNGG 5 cut(s) 110, 459, 647, 692, 697
BplI GAGNNNNNCTC 2 cut(s) 654, 686
BpuMI CCSGG 4 cut(s) 110, 459, 692, 697
BsaAI YACGTR 1 cut(s) 526
BsaHI GRCGYC 2 cut(s) 245, 624
BsaI GGTCTC 1 cut(s) 240
Bsc4I CCNNNNNNNGG 5 cut(s) 97, 100, 166, 265, 277
BseBI CCWGG 1 cut(s) 647
BseLI CCNNNNNNNGG 5 cut(s) 97, 100, 166, 265, 277
BseMII CTCAG 2 cut(s) 536, 685
BsePI GCGCGC 1 cut(s) 150
BseX3I CGGCCG 2 cut(s) 198, 693
BseXI GCAGC 3 cut(s) 206, 506, 730
Bsh1236I CGCG 2 cut(s) 152, 608
Bsh1285I CGRYCG 3 cut(s) 186, 201, 696
BshFI GGCC 6 cut(s) 158, 200, 315, 377, 386, 695
BsiEI CGRYCG 3 cut(s) 186, 201, 696
BsiHKAI GWGCWC 1 cut(s) 773
BsiSI CCGG 4 cut(s) 109, 459, 692, 696
BslFI GGGAC 4 cut(s) 101, 498, 578, 580
BslI CCNNNNNNNGG 5 cut(s) 97, 100, 166, 265, 277
BsmAI GTCTC 3 cut(s) 123, 240, 644
BsmBI CGTCTC 1 cut(s) 644
BsmFI GGGAC 4 cut(s) 101, 498, 578, 580
BsnI GGCC 6 cut(s) 158, 200, 315, 377, 386, 695
Bso31I GGTCTC 1 cut(s) 240
Bsp1286I GDGCHC 1 cut(s) 773
Bsp143I GATC 2 cut(s) 7, 183
BspANI GGCC 6 cut(s) 158, 200, 315, 377, 386, 695
BspCNI CTCAG 2 cut(s) 537, 684
BspFNI CGCG 2 cut(s) 152, 608
BspLI GGNNCC 4 cut(s) 89, 486, 566, 567
BspTNI GGTCTC 1 cut(s) 240
BsrBI CCGCTC 2 cut(s) 190, 443
BssHII GCGCGC 1 cut(s) 150
BssMI GATC 2 cut(s) 7, 183
BssNI GRCGYC 2 cut(s) 245, 624
Bst2UI CCWGG 1 cut(s) 647
Bst4CI ACNGT 1 cut(s) 268
Bst6I CTCTTC 1 cut(s) 581
BstACI GRCGYC 2 cut(s) 245, 624
BstAPI GCANNNNNTGC 1 cut(s) 514
BstBAI YACGTR 1 cut(s) 526
BstC8I GCNNGC 6 cut(s) 152, 156, 192, 252, 317, 723
BstDEI CTNAG 2 cut(s) 545, 671
BstFNI CGCG 2 cut(s) 152, 608
BstHHI GCGC 4 cut(s) 64, 152, 154, 519
BstKTI GATC 2 cut(s) 10, 186
BstMAI GTCTC 3 cut(s) 123, 240, 644
BstMBI GATC 2 cut(s) 7, 183
BstMCI CGRYCG 3 cut(s) 186, 201, 696
BstMWI GCNNNNNNNGC 4 cut(s) 59, 200, 383, 514
BstNI CCWGG 1 cut(s) 647
BstNSI RCATGY 1 cut(s) 643
BstSCI CCNGG 5 cut(s) 108, 457, 645, 690, 695
BstUI CGCG 2 cut(s) 152, 608
BstV1I GCAGC 3 cut(s) 206, 506, 730
BstZI CGGCCG 2 cut(s) 198, 693
BsuRI GGCC 6 cut(s) 158, 200, 315, 377, 386, 695
BtrI CACGTC 1 cut(s) 58
Cac8I GCNNGC 6 cut(s) 152, 156, 192, 252, 317, 723
CciNI GCGGCCGC 1 cut(s) 198
CfoI GCGC 4 cut(s) 64, 152, 154, 519
Cfr13I GGNCC 5 cut(s) 88, 157, 268, 485, 565
CseI GACGC 2 cut(s) 253, 632
CviAII CATG 7 cut(s) 241, 272, 301, 388, 505, 628, 640
DdeI CTNAG 2 cut(s) 545, 671
DpnI GATC 2 cut(s) 9, 185
DpnII GATC 2 cut(s) 7, 183
DrdI GACNNNNNNGTC 1 cut(s) 734
DseDI GACNNNNNNGTC 1 cut(s) 734
EaeI YGGCCR 2 cut(s) 198, 693
EagI CGGCCG 2 cut(s) 198, 693
Eam1104I CTCTTC 1 cut(s) 581
EarI CTCTTC 1 cut(s) 581
EciI GGCGGA 1 cut(s) 68
EclXI CGGCCG 2 cut(s) 198, 693
Eco147I AGGCCT 1 cut(s) 315
Eco31I GGTCTC 1 cut(s) 240
Eco47I GGWCC 4 cut(s) 88, 268, 485, 565
Eco52I CGGCCG 2 cut(s) 198, 693
Eco57I CTGAAG 1 cut(s) 68
EcoO109I RGGNCCY 1 cut(s) 565
EcoRII CCWGG 1 cut(s) 645
Esp3I CGTCTC 1 cut(s) 644
FaeI CATG 7 cut(s) 244, 275, 304, 391, 508, 631, 643
FaqI GGGAC 4 cut(s) 101, 498, 578, 580
FatI CATG 7 cut(s) 240, 271, 300, 387, 504, 627, 639
FauI CCCGC 1 cut(s) 183
Fnu4HI GCNGC 9 cut(s) 102, 195, 198, 201, 248, 375, 444, 520, 719
Fsp4HI GCNGC 9 cut(s) 102, 195, 198, 201, 248, 375, 444, 520, 719
FspBI CTAG 2 cut(s) 95, 778
GlaI GCGC 4 cut(s) 63, 151, 153, 518
GluI GCNGC 9 cut(s) 102, 195, 198, 201, 248, 375, 444, 520, 719
HaeIII GGCC 6 cut(s) 158, 200, 315, 377, 386, 695
HapII CCGG 4 cut(s) 109, 459, 692, 696
HgaI GACGC 2 cut(s) 253, 632
HhaI GCGC 4 cut(s) 64, 152, 154, 519
Hin1I GRCGYC 2 cut(s) 245, 624
Hin1II CATG 7 cut(s) 244, 275, 304, 391, 508, 631, 643
Hin6I GCGC 4 cut(s) 62, 150, 152, 517
HinP1I GCGC 4 cut(s) 62, 150, 152, 517
HincII GTYRAC 1 cut(s) 739
HindII GTYRAC 1 cut(s) 739
HinfI GANTC 3 cut(s) 468, 665, 711
HpaII CCGG 4 cut(s) 109, 459, 692, 696
Hpy166II GTNNAC 1 cut(s) 739
Hpy188I TCNGA 1 cut(s) 411
Hpy188III TCNNGA 1 cut(s) 493
Hpy8I GTNNAC 1 cut(s) 739
Hpy99I CGWCG 1 cut(s) 344
HpyAV CCTTC 6 cut(s) 43, 305, 339, 376, 554, 604
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4IV ACGT 4 cut(s) 57, 512, 525, 653
HpyCH4V TGCA 3 cut(s) 4, 508, 636
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 200, 383, 514
HpyF3I CTNAG 2 cut(s) 545, 671
HpySE526I ACGT 4 cut(s) 57, 512, 525, 653
Hsp92I GRCGYC 2 cut(s) 245, 624
Hsp92II CATG 7 cut(s) 244, 275, 304, 391, 508, 631, 643
HspAI GCGC 4 cut(s) 62, 150, 152, 517
KflI GGGWCCC 1 cut(s) 565
Kzo9I GATC 2 cut(s) 7, 183
LmnI GCTCC 1 cut(s) 124
Lsp1109I GCAGC 3 cut(s) 206, 506, 730
MaeI CTAG 2 cut(s) 95, 778
MaeII ACGT 4 cut(s) 57, 512, 525, 653
MaeIII GTNAC 2 cut(s) 173, 614
MalI GATC 2 cut(s) 9, 185
MbiI CCGCTC 2 cut(s) 190, 443
MboI GATC 2 cut(s) 7, 183
MboII GAAGA 3 cut(s) 32, 174, 568
MhlI GDGCHC 1 cut(s) 773
MluCI AATT 1 cut(s) 119
MseI TTAA 1 cut(s) 351
MslI CAYNNNNRTG 2 cut(s) 143, 503
MspA1I CMGCKG 5 cut(s) 197, 250, 538, 675, 721
MspI CCGG 4 cut(s) 109, 459, 692, 696
MspR9I CCNGG 5 cut(s) 110, 459, 647, 692, 697
MvaI CCWGG 1 cut(s) 647
MvnI CGCG 2 cut(s) 152, 608
MwoI GCNNNNNNNGC 4 cut(s) 59, 200, 383, 514
NciI CCSGG 4 cut(s) 110, 459, 692, 697
NdeII GATC 2 cut(s) 7, 183
NlaIII CATG 7 cut(s) 244, 275, 304, 391, 508, 631, 643
NlaIV GGNNCC 4 cut(s) 89, 486, 566, 567
NmuCI GTSAC 1 cut(s) 173
NotI GCGGCCGC 1 cut(s) 198
NspI RCATGY 1 cut(s) 643
PauI GCGCGC 1 cut(s) 150
PceI AGGCCT 1 cut(s) 315
PciI ACATGT 1 cut(s) 639
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PfeI GAWTC 3 cut(s) 468, 665, 711
PfoI TCCNGGA 2 cut(s) 108, 645
PkrI GCNGC 9 cut(s) 103, 196, 199, 202, 249, 376, 445, 521, 720
Ple19I CGATCG 1 cut(s) 186
Ppu21I YACGTR 1 cut(s) 526
PpuMI RGGWCCY 1 cut(s) 565
PscI ACATGT 1 cut(s) 639
Psp5II RGGWCCY 1 cut(s) 565
Psp6I CCWGG 1 cut(s) 645
PspGI CCWGG 1 cut(s) 645
PspN4I GGNNCC 4 cut(s) 89, 486, 566, 567
PspPI GGNCC 5 cut(s) 88, 157, 268, 485, 565
PspPPI RGGWCCY 1 cut(s) 565
PteI GCGCGC 1 cut(s) 150
PvuI CGATCG 1 cut(s) 186
PvuII CAGCTG 2 cut(s) 675, 721
RseI CAYNNNNRTG 2 cut(s) 143, 503
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 9 cut(s) 102, 195, 198, 201, 248, 375, 444, 520, 719
Sau3AI GATC 2 cut(s) 7, 183
Sau96I GGNCC 5 cut(s) 88, 157, 268, 485, 565
ScrFI CCNGG 5 cut(s) 110, 459, 647, 692, 697
SduI GDGCHC 1 cut(s) 773
SfiI GGCCNNNNNGGCC 1 cut(s) 383
SinI GGWCC 4 cut(s) 88, 268, 485, 565
SmiMI CAYNNNNRTG 2 cut(s) 143, 503
Sse9I AATT 1 cut(s) 119
SseBI AGGCCT 1 cut(s) 315
SspMI CTAG 2 cut(s) 95, 778
StuI AGGCCT 1 cut(s) 315
StyD4I CCNGG 5 cut(s) 108, 457, 645, 690, 695
TaaI ACNGT 1 cut(s) 268
TaiI ACGT 4 cut(s) 60, 515, 528, 656
TaqI TCGA 6 cut(s) 186, 229, 339, 471, 582, 701
TasI AATT 1 cut(s) 119
TauI GCSGC 6 cut(s) 104, 200, 203, 250, 377, 446
TfiI GAWTC 3 cut(s) 468, 665, 711
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 3 cut(s) 194, 519, 718
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 2 cut(s) 441, 736
TspGWI ACGGA 4 cut(s) 236, 357, 635, 773
VpaK11BI GGWCC 4 cut(s) 88, 268, 485, 565
XceI RCATGY 1 cut(s) 643
XcmI CCANNNNNNNNNTGG 1 cut(s) 247
XspI CTAG 2 cut(s) 95, 778
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.